Wall clock time and date at job start Tue Mar 31 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47289 * 2 1 4 4 C 1.52994 * 109.47412 * 120.00904 * 2 1 3 5 5 C 1.52998 * 109.47193 * 184.99664 * 4 2 1 6 6 C 1.50700 * 109.47425 * 179.97438 * 5 4 2 7 7 H 1.08002 * 119.99915 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00517 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99731 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00227 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46793 * 90.00554 * 10 8 6 12 12 H 1.48506 * 109.47395 * 209.99751 * 10 8 6 13 13 H 1.48495 * 109.47741 * 330.00518 * 10 8 6 14 14 N 1.46903 * 109.46423 * 240.00547 * 2 1 3 15 15 C 1.46898 * 110.99964 * 85.00341 * 14 2 1 16 16 C 1.53007 * 109.47100 * 179.97438 * 15 14 2 17 17 H 1.09004 * 109.47109 * 59.99587 * 16 15 14 18 18 O 1.42896 * 109.46805 * 299.99741 * 16 15 14 19 19 C 1.50699 * 109.47150 * 179.97438 * 16 15 14 20 20 C 1.38216 * 120.01501 * 95.02128 * 19 16 15 21 21 C 1.38226 * 120.02514 * 179.97438 * 20 19 16 22 22 C 1.38265 * 120.05338 * 0.02562 * 21 20 19 23 23 C 1.38176 * 120.02279 * 359.74109 * 22 21 20 24 24 C 1.38436 * 120.00926 * 274.99491 * 19 16 15 25 25 F 1.35104 * 120.02854 * 0.02562 * 24 19 16 26 26 H 1.09002 * 109.46477 * 299.99292 * 1 2 3 27 27 H 1.08998 * 109.47654 * 59.99328 * 1 2 3 28 28 H 1.08997 * 109.47289 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.47014 * 304.99319 * 4 2 1 30 30 H 1.09000 * 109.47760 * 64.99265 * 4 2 1 31 31 H 1.08997 * 109.47219 * 299.99539 * 5 4 2 32 32 H 1.09004 * 109.47159 * 59.99945 * 5 4 2 33 33 H 0.97001 * 120.00046 * 179.97438 * 9 8 6 34 34 H 1.00906 * 110.99380 * 208.95149 * 14 2 1 35 35 H 1.08996 * 109.47359 * 59.99410 * 15 14 2 36 36 H 1.09003 * 109.46675 * 299.99156 * 15 14 2 37 37 H 0.96700 * 114.00060 * 299.99640 * 18 16 15 38 38 H 1.08001 * 119.98628 * 359.97438 * 20 19 16 39 39 H 1.08001 * 119.97063 * 179.97438 * 21 20 19 40 40 H 1.07993 * 119.98889 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.01677 * 180.27805 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5649 -0.6135 1.3134 6 6 4.0673 -1.3235 2.5441 7 1 3.3689 -1.8041 3.2132 8 6 5.4186 -1.3606 2.8153 9 7 6.2692 -0.7758 2.0003 10 14 6.0412 -2.2401 4.3411 11 1 6.3205 -3.6614 4.0137 12 1 7.2880 -1.5871 4.8149 13 1 5.0102 -2.1712 5.4076 14 7 2.0195 -0.6924 -1.1996 15 6 2.0823 0.2228 -2.3469 16 6 2.5960 -0.5326 -3.5744 17 1 1.9198 -1.3564 -3.8032 18 8 3.9010 -1.0484 -3.3045 19 6 2.6598 0.4061 -4.7515 20 6 3.8444 1.0475 -5.0610 21 6 3.9033 1.9081 -6.1410 22 6 2.7775 2.1289 -6.9127 23 6 1.5934 1.4851 -6.6081 24 6 1.5320 0.6259 -5.5238 25 9 0.3736 -0.0005 -5.2223 26 1 -0.3632 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6055 -0.2619 2.1369 30 1 1.7517 -1.7717 1.2054 31 1 3.9995 -1.0730 0.4257 32 1 3.8533 0.4368 1.3572 33 1 7.2198 -0.8015 2.1913 34 1 2.9172 -1.1205 -1.0289 35 1 2.7587 1.0463 -2.1182 36 1 1.0869 0.6165 -2.5524 37 1 4.5561 -0.3695 -3.0925 38 1 4.7243 0.8761 -4.4586 39 1 4.8293 2.4091 -6.3817 40 1 2.8248 2.8012 -7.7565 41 1 0.7153 1.6542 -7.2136 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488934.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:10 Heat of formation + Delta-G solvation = -109.759267 kcal Electronic energy + Delta-G solvation = -21837.363099 eV Core-core repulsion = 18436.901976 eV Total energy + Delta-G solvation = -3400.461123 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.94675 -40.57871 -38.90056 -37.58480 -35.22094 -33.41121 -32.29882 -31.51220 -30.80321 -28.12069 -26.95668 -24.33615 -23.63313 -23.12725 -22.23768 -21.05591 -19.03144 -18.55481 -17.83522 -17.68249 -16.98780 -16.69279 -16.55585 -16.31118 -16.21699 -15.38829 -15.18349 -14.95465 -14.43546 -14.40973 -14.24007 -14.02775 -13.57522 -13.32503 -13.18500 -13.05568 -12.96077 -12.83714 -12.59681 -12.37678 -12.28037 -12.08601 -11.94680 -11.61577 -11.35966 -11.15635 -10.94664 -10.53642 -9.96606 -9.65925 -9.37642 -8.19592 -6.29571 0.12193 0.21390 1.39974 1.41092 1.51822 2.41308 2.56565 3.05158 3.13913 3.23364 3.37447 3.69886 3.78912 3.92510 4.01165 4.06718 4.17680 4.32978 4.35771 4.38060 4.46537 4.59483 4.76182 4.76244 4.89551 4.96592 5.00041 5.05123 5.05791 5.18308 5.21149 5.35567 5.41680 5.43717 5.52736 5.69747 5.84273 5.90633 6.16016 6.26273 6.41239 6.61186 6.85885 7.39075 8.91721 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022702 B = 0.003634 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.097916 B = 7703.351872 C = 8581.029270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.086 3.914 3 H 0.029 0.971 4 C -0.102 4.102 5 C 0.028 3.972 6 C -0.544 4.544 7 H 0.056 0.944 8 C 0.003 3.997 9 N -0.928 5.928 10 Si 0.962 3.038 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.265 1.265 14 N -0.686 5.686 15 C 0.042 3.958 16 C 0.158 3.842 17 H 0.102 0.898 18 O -0.561 6.561 19 C -0.162 4.162 20 C -0.096 4.096 21 C -0.124 4.124 22 C -0.088 4.088 23 C -0.155 4.155 24 C 0.082 3.918 25 F -0.148 7.148 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.000 1.000 32 H -0.015 1.015 33 H 0.263 0.737 34 H 0.345 0.655 35 H 0.030 0.970 36 H 0.081 0.919 37 H 0.383 0.617 38 H 0.141 0.859 39 H 0.157 0.843 40 H 0.166 0.834 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.833 7.647 -18.624 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.023 4.023 3 H 0.047 0.953 4 C -0.140 4.140 5 C -0.009 4.009 6 C -0.582 4.582 7 H 0.074 0.926 8 C -0.195 4.195 9 N -0.568 5.568 10 Si 0.786 3.214 11 H -0.199 1.199 12 H -0.206 1.206 13 H -0.190 1.190 14 N -0.320 5.320 15 C -0.087 4.087 16 C 0.098 3.902 17 H 0.119 0.881 18 O -0.369 6.369 19 C -0.163 4.163 20 C -0.114 4.114 21 C -0.142 4.142 22 C -0.105 4.105 23 C -0.174 4.174 24 C 0.063 3.937 25 F -0.127 7.127 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.018 0.982 32 H 0.004 0.996 33 H 0.072 0.928 34 H 0.166 0.834 35 H 0.048 0.952 36 H 0.099 0.901 37 H 0.233 0.767 38 H 0.158 0.842 39 H 0.175 0.825 40 H 0.184 0.816 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.618 6.843 -18.903 21.873 hybrid contribution 1.353 0.439 1.261 1.901 sum -7.265 7.282 -17.642 20.422 Atomic orbital electron populations 1.21719 0.93277 1.02152 1.01487 1.21562 0.96388 0.94996 0.89393 0.95254 1.21649 0.96426 0.99740 0.96173 1.18987 0.91889 0.94510 0.95486 1.21674 0.92584 1.34659 1.09317 0.92563 1.25914 0.97314 0.96296 1.00000 1.70075 1.02686 1.45188 1.38887 0.85500 0.77810 0.78622 0.79432 1.19904 1.20636 1.18963 1.60593 1.34442 1.32490 1.04504 1.22555 1.01185 0.93847 0.91155 1.20583 0.84969 0.94776 0.89824 0.88057 1.86648 1.19772 1.38612 1.91843 1.20602 0.94625 1.01930 0.99191 1.21094 0.96560 0.95513 0.98195 1.21579 1.00332 0.97819 0.94489 1.21466 0.91015 0.98173 0.99881 1.21465 1.01429 0.97720 0.96780 1.17796 0.81393 0.96968 0.97543 1.91476 1.47138 1.81008 1.93039 0.91633 0.92538 0.92391 0.92315 0.92834 0.98183 0.99615 0.92826 0.83428 0.95216 0.90081 0.76681 0.84176 0.82498 0.81639 0.82763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 9.41 71.98 0.68 -3.07 16 2 C 0.09 3.07 2.65 44.91 0.12 3.19 16 3 H 0.03 1.08 7.80 -2.39 -0.02 1.07 16 4 C -0.10 -4.32 4.74 30.59 0.15 -4.18 16 5 C 0.03 1.50 4.80 29.85 0.14 1.64 16 6 C -0.54 -31.38 9.11 25.60 0.23 -31.15 16 7 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 8 C 0.00 0.16 5.46 84.65 0.46 0.62 16 9 N -0.93 -56.06 13.29 21.45 0.28 -55.77 16 10 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 14 N -0.69 -24.27 6.31 -491.57 -3.10 -27.37 16 15 C 0.04 1.27 5.17 86.31 0.45 1.71 16 16 C 0.16 4.44 3.25 29.85 0.10 4.54 16 17 H 0.10 3.11 7.79 -2.38 -0.02 3.10 16 18 O -0.56 -16.97 12.33 -148.98 -1.84 -18.81 16 19 C -0.16 -3.84 5.07 -19.82 -0.10 -3.94 16 20 C -0.10 -1.86 9.30 22.26 0.21 -1.66 16 21 C -0.12 -1.80 10.04 22.27 0.22 -1.58 16 22 C -0.09 -1.13 10.04 22.26 0.22 -0.91 16 23 C -0.16 -2.59 10.03 22.31 0.22 -2.37 16 24 C 0.08 1.88 7.24 22.38 0.16 2.04 16 25 F -0.15 -3.80 16.57 44.97 0.75 -3.06 16 26 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 1.50 7.45 -2.39 -0.02 1.48 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 30 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.00 0.00 6.43 -2.39 -0.02 -0.02 16 32 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 33 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 34 H 0.34 13.94 5.86 -89.69 -0.53 13.41 16 35 H 0.03 0.90 8.05 -2.39 -0.02 0.88 16 36 H 0.08 2.32 7.44 -2.39 -0.02 2.30 16 37 H 0.38 9.55 7.33 -74.06 -0.54 9.01 16 38 H 0.14 2.42 6.41 -2.91 -0.02 2.40 16 39 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.17 1.00 8.06 -2.91 -0.02 0.97 16 41 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -67.20 341.18 1.35 -65.85 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -0.03 Total: 27.54 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 3.26 Total: -35.10 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -2.82 Total: -83.15 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -1.84 Total: -18.81 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.75 Total: -3.06 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -67.20 1.35 -65.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488934.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.912 kcal (2) G-P(sol) polarization free energy of solvation -67.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds