Wall clock time and date at job start Tue Mar 31 2020 05:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47371 * 2 1 4 4 C 1.52995 * 109.47055 * 120.00467 * 2 1 3 5 5 C 1.53006 * 109.46995 * 184.99931 * 4 2 1 6 6 C 1.50693 * 109.47150 * 179.97438 * 5 4 2 7 7 H 1.08003 * 120.00165 * 0.02562 * 6 5 4 8 8 C 1.37883 * 120.00095 * 179.97438 * 6 5 4 9 9 N 1.31509 * 119.99807 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00108 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47070 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47085 * 119.99988 * 10 8 6 13 13 H 1.48501 * 109.47187 * 240.00498 * 10 8 6 14 14 N 1.46905 * 109.47038 * 240.00227 * 2 1 3 15 15 C 1.46903 * 111.00002 * 84.99720 * 14 2 1 16 16 C 1.52992 * 109.47169 * 179.97438 * 15 14 2 17 17 H 1.09004 * 109.47343 * 305.00153 * 16 15 14 18 18 O 1.42900 * 109.47322 * 65.00499 * 16 15 14 19 19 C 1.50707 * 109.47330 * 185.00002 * 16 15 14 20 20 C 1.38216 * 120.01546 * 265.00278 * 19 16 15 21 21 C 1.38217 * 120.02581 * 180.02562 * 20 19 16 22 22 C 1.38265 * 120.05343 * 0.02562 * 21 20 19 23 23 C 1.38181 * 120.02597 * 359.97438 * 22 21 20 24 24 C 1.38443 * 120.00897 * 85.02237 * 19 16 15 25 25 F 1.35099 * 120.02540 * 359.97438 * 24 19 16 26 26 H 1.09001 * 109.47177 * 60.00064 * 1 2 3 27 27 H 1.08998 * 109.47047 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.46856 * 299.99690 * 1 2 3 29 29 H 1.08996 * 109.47465 * 304.99579 * 4 2 1 30 30 H 1.08999 * 109.47624 * 65.00024 * 4 2 1 31 31 H 1.09006 * 109.46733 * 299.99873 * 5 4 2 32 32 H 1.08999 * 109.46858 * 59.99624 * 5 4 2 33 33 H 0.97002 * 120.00344 * 180.02562 * 9 8 6 34 34 H 1.00898 * 111.00357 * 208.95274 * 14 2 1 35 35 H 1.09006 * 109.46819 * 60.00131 * 15 14 2 36 36 H 1.08998 * 109.47104 * 300.00178 * 15 14 2 37 37 H 0.96702 * 114.00240 * 59.99329 * 18 16 15 38 38 H 1.08000 * 119.98383 * 0.04576 * 20 19 16 39 39 H 1.07997 * 119.97708 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.99414 * 179.72576 * 22 21 20 41 41 H 1.08002 * 120.01473 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.6134 1.3136 6 6 4.0672 -1.3233 2.5442 7 1 3.3687 -1.8039 3.2134 8 6 5.4185 -1.3603 2.8156 9 7 6.2690 -0.7756 2.0006 10 14 6.0412 -2.2409 4.3407 11 1 4.8912 -2.8126 5.0865 12 1 6.9630 -3.3340 3.9395 13 1 6.7644 -1.2769 5.2084 14 7 2.0197 -0.6925 -1.1995 15 6 2.0824 0.2227 -2.3470 16 6 2.5962 -0.5327 -3.5742 17 1 3.5520 -1.0009 -3.3389 18 8 1.6513 -1.5388 -3.9444 19 6 2.7772 0.4315 -4.7182 20 6 1.7700 0.5952 -5.6505 21 6 1.9360 1.4791 -6.7000 22 6 3.1098 2.2001 -6.8191 23 6 4.1182 2.0381 -5.8883 24 6 3.9527 1.1534 -4.8359 25 9 4.9378 0.9942 -3.9252 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6055 -0.2619 2.1369 30 1 1.7517 -1.7716 1.2055 31 1 3.9995 -1.0729 0.4258 32 1 3.8532 0.4369 1.3572 33 1 7.2198 -0.8019 2.1912 34 1 2.9173 -1.1205 -1.0289 35 1 2.7589 1.0463 -2.1182 36 1 1.0870 0.6164 -2.5525 37 1 0.7761 -1.1933 -4.1676 38 1 0.8528 0.0325 -5.5585 39 1 1.1483 1.6067 -7.4278 40 1 3.2403 2.8872 -7.6420 41 1 5.0351 2.6011 -5.9817 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488936.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:14 Heat of formation + Delta-G solvation = -109.651337 kcal Electronic energy + Delta-G solvation = -21850.536359 eV Core-core repulsion = 18450.079916 eV Total energy + Delta-G solvation = -3400.456443 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.00071 -40.55042 -38.86680 -37.57842 -35.25452 -33.43111 -32.28191 -31.51527 -30.81772 -28.03784 -26.98799 -24.38224 -23.63153 -23.15506 -22.27379 -21.05441 -19.00887 -18.59148 -17.87857 -17.66169 -16.87526 -16.73421 -16.58255 -16.36207 -16.04216 -15.53203 -15.22549 -14.95317 -14.47387 -14.41569 -14.21829 -14.06952 -13.50573 -13.34361 -13.18312 -13.04671 -12.93211 -12.87275 -12.59726 -12.34566 -12.28214 -12.09328 -11.96143 -11.63130 -11.37230 -11.08253 -10.95529 -10.58346 -9.96557 -9.66697 -9.38080 -8.22479 -6.33846 0.11598 0.21767 1.37487 1.38209 1.51707 2.38897 2.57217 3.03577 3.10966 3.25609 3.40852 3.70925 3.76689 3.94562 3.96484 4.07302 4.20471 4.32292 4.37021 4.38191 4.46295 4.59336 4.74004 4.76697 4.89403 4.98166 5.01832 5.05017 5.05695 5.18463 5.20727 5.35548 5.42768 5.43302 5.50968 5.65549 5.81099 5.91162 6.15196 6.22308 6.30712 6.80341 6.83050 7.35643 8.89226 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020063 B = 0.003821 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.273601 B = 7325.373755 C = 8268.289821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.084 3.916 3 H 0.024 0.976 4 C -0.101 4.101 5 C 0.026 3.974 6 C -0.542 4.542 7 H 0.060 0.940 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.966 3.034 11 H -0.261 1.261 12 H -0.278 1.278 13 H -0.278 1.278 14 N -0.677 5.677 15 C 0.042 3.958 16 C 0.162 3.838 17 H 0.077 0.923 18 O -0.546 6.546 19 C -0.162 4.162 20 C -0.084 4.084 21 C -0.120 4.120 22 C -0.088 4.088 23 C -0.161 4.161 24 C 0.068 3.932 25 F -0.159 7.159 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.056 0.944 31 H -0.006 1.006 32 H -0.019 1.019 33 H 0.263 0.737 34 H 0.335 0.665 35 H 0.016 0.984 36 H 0.097 0.903 37 H 0.387 0.613 38 H 0.159 0.841 39 H 0.167 0.833 40 H 0.166 0.834 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.264 6.625 -19.756 24.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.025 4.025 3 H 0.042 0.958 4 C -0.139 4.139 5 C -0.011 4.011 6 C -0.580 4.580 7 H 0.078 0.922 8 C -0.199 4.199 9 N -0.574 5.574 10 Si 0.790 3.210 11 H -0.185 1.185 12 H -0.204 1.204 13 H -0.203 1.203 14 N -0.309 5.309 15 C -0.087 4.087 16 C 0.102 3.898 17 H 0.095 0.905 18 O -0.354 6.354 19 C -0.164 4.164 20 C -0.102 4.102 21 C -0.138 4.138 22 C -0.106 4.106 23 C -0.180 4.180 24 C 0.049 3.951 25 F -0.138 7.138 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.013 0.987 32 H 0.000 1.000 33 H 0.071 0.929 34 H 0.154 0.846 35 H 0.034 0.966 36 H 0.115 0.885 37 H 0.237 0.763 38 H 0.176 0.824 39 H 0.184 0.816 40 H 0.183 0.817 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.184 6.010 -19.786 24.001 hybrid contribution 1.798 0.577 1.330 2.309 sum -10.386 6.587 -18.456 22.178 Atomic orbital electron populations 1.21688 0.92525 1.02335 1.01693 1.21600 0.96901 0.94688 0.89350 0.95810 1.21640 0.95947 0.99939 0.96360 1.19012 0.92366 0.94314 0.95426 1.21715 0.92598 1.34506 1.09170 0.92183 1.26006 0.97360 0.96346 1.00197 1.70112 1.02729 1.45450 1.39069 0.85383 0.78443 0.78225 0.78907 1.18466 1.20395 1.20332 1.60683 1.33549 1.32262 1.04445 1.22614 1.01402 0.93579 0.91136 1.20345 0.92889 0.87082 0.89456 0.90497 1.86651 1.24769 1.34271 1.89701 1.20651 0.94967 1.00421 1.00363 1.21154 0.98157 0.97887 0.93008 1.21644 0.98637 0.95311 0.98192 1.21481 0.92116 0.98847 0.98115 1.21446 1.02602 0.99319 0.94639 1.18076 0.86275 1.00598 0.90187 1.91492 1.61278 1.94739 1.66263 0.91879 0.92138 0.91862 0.92194 0.92539 0.98731 1.00032 0.92856 0.84626 0.96606 0.88478 0.76282 0.82388 0.81581 0.81694 0.83732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.41 9.42 71.98 0.68 -2.74 16 2 C 0.08 3.00 2.65 44.91 0.12 3.12 16 3 H 0.02 0.91 7.80 -2.39 -0.02 0.89 16 4 C -0.10 -4.33 4.74 30.59 0.15 -4.19 16 5 C 0.03 1.42 4.80 29.85 0.14 1.56 16 6 C -0.54 -31.91 9.11 25.60 0.23 -31.68 16 7 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 8 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 9 N -0.93 -58.66 13.29 21.45 0.28 -58.38 16 10 Si 0.97 45.66 29.54 68.60 2.03 47.68 16 11 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 N -0.68 -24.00 6.26 -491.57 -3.08 -27.07 16 15 C 0.04 1.27 5.10 86.30 0.44 1.71 16 16 C 0.16 4.60 3.16 29.85 0.09 4.69 16 17 H 0.08 2.68 7.79 -2.38 -0.02 2.66 16 18 O -0.55 -13.92 12.94 -148.98 -1.93 -15.84 16 19 C -0.16 -3.89 5.07 -19.82 -0.10 -4.00 16 20 C -0.08 -1.34 9.30 22.26 0.21 -1.14 16 21 C -0.12 -1.43 10.04 22.27 0.22 -1.21 16 22 C -0.09 -1.16 10.04 22.26 0.22 -0.94 16 23 C -0.16 -3.20 10.03 22.31 0.22 -2.97 16 24 C 0.07 1.82 7.24 22.38 0.16 1.98 16 25 F -0.16 -5.41 16.57 44.97 0.75 -4.67 16 26 H 0.06 1.47 7.45 -2.39 -0.02 1.45 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 31 H -0.01 -0.32 6.43 -2.38 -0.02 -0.34 16 32 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 33 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 34 H 0.33 14.04 6.47 -89.70 -0.58 13.46 16 35 H 0.02 0.54 8.06 -2.38 -0.02 0.52 16 36 H 0.10 2.37 7.44 -2.39 -0.02 2.35 16 37 H 0.39 6.18 7.33 -74.06 -0.54 5.64 16 38 H 0.16 1.58 6.41 -2.91 -0.02 1.57 16 39 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 40 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 41 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -72.64 342.18 1.22 -71.42 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -0.09 Total: 22.28 kcal Atomic # 6 Polarization: -38.68 SS G_CDS: 3.25 Total: -35.42 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -2.79 Total: -85.45 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -1.93 Total: -15.84 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 0.75 Total: -4.67 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -72.64 1.22 -71.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488936.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.230 kcal (2) G-P(sol) polarization free energy of solvation -72.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds