Wall clock time and date at job start Tue Mar 31 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35944 * 116.99943 * 2 1 4 4 C 1.38727 * 120.03189 * 0.02562 * 3 2 1 5 5 C 1.38130 * 119.97170 * 179.97438 * 4 3 2 6 6 C 1.38474 * 120.02819 * 0.02562 * 5 4 3 7 7 F 1.35101 * 119.96853 * 180.27264 * 6 5 4 8 8 C 1.38435 * 120.06061 * 0.02562 * 6 5 4 9 9 C 1.50697 * 119.98248 * 179.97438 * 8 6 5 10 10 N 1.46904 * 109.47443 * 284.99798 * 9 8 6 11 11 C 1.46896 * 111.00146 * 180.02562 * 10 9 8 12 12 H 1.08999 * 109.47342 * 35.00251 * 11 10 9 13 13 C 1.53001 * 109.47095 * 274.99791 * 11 10 9 14 14 C 1.53006 * 109.46922 * 155.00384 * 11 10 9 15 15 C 1.53001 * 109.46582 * 294.99941 * 14 11 10 16 16 C 1.50703 * 109.46628 * 180.02562 * 15 14 11 17 17 H 1.07998 * 120.00598 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99711 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99872 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00148 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47379 * 89.99506 * 20 18 16 22 22 H 1.48498 * 109.47153 * 210.00030 * 20 18 16 23 23 H 1.48502 * 109.46906 * 329.99441 * 20 18 16 24 24 C 1.38166 * 120.03120 * 359.97438 * 8 6 5 25 25 H 1.08989 * 109.46820 * 300.00098 * 1 2 3 26 26 H 1.09002 * 109.46781 * 60.00059 * 1 2 3 27 27 H 1.08998 * 109.46898 * 179.97438 * 1 2 3 28 28 H 1.08007 * 120.01189 * 359.97438 * 4 3 2 29 29 H 1.08004 * 119.98188 * 180.02562 * 5 4 3 30 30 H 1.08996 * 109.47551 * 44.99888 * 9 8 6 31 31 H 1.09003 * 109.47320 * 164.99979 * 9 8 6 32 32 H 1.00906 * 110.99292 * 56.04371 * 10 9 8 33 33 H 1.08999 * 109.47401 * 300.00424 * 13 11 10 34 34 H 1.09000 * 109.46810 * 60.00291 * 13 11 10 35 35 H 1.09000 * 109.46592 * 180.02562 * 13 11 10 36 36 H 1.08992 * 109.47248 * 54.99664 * 14 11 10 37 37 H 1.09003 * 109.47040 * 175.00384 * 14 11 10 38 38 H 1.09000 * 109.47322 * 299.99561 * 15 14 11 39 39 H 1.08998 * 109.47518 * 60.00297 * 15 14 11 40 40 H 0.97002 * 120.00333 * 179.97438 * 19 18 16 41 41 H 1.08001 * 120.01702 * 179.97438 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2913 2.3752 0.0005 5 6 1.9197 3.6052 0.0011 6 6 3.3026 3.6770 0.0005 7 9 3.9159 4.8807 0.0066 8 6 4.0571 2.5163 -0.0011 9 6 5.5620 2.5964 -0.0022 10 7 6.0309 2.9815 -1.3401 11 6 7.4967 3.0691 -1.3792 12 1 7.9239 2.3053 -0.7295 13 6 7.9379 4.4529 -0.8981 14 6 7.9827 2.8489 -2.8132 15 6 7.6507 1.4207 -3.2504 16 6 8.1299 1.2036 -4.6626 17 1 8.6216 2.0042 -5.1952 18 6 7.9405 -0.0173 -5.2748 19 7 8.3582 -0.2066 -6.5074 20 14 7.0894 -1.4018 -4.3540 21 1 5.6262 -1.3322 -4.5976 22 1 7.6093 -2.7078 -4.8329 23 1 7.3561 -1.2662 -2.8995 24 6 3.4312 1.2846 -0.0016 25 1 -0.3632 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2127 2.3194 0.0005 29 1 1.3321 4.5115 0.0019 30 1 5.8868 3.3407 0.7247 31 1 5.9778 1.6243 0.2626 32 1 5.6084 3.8489 -1.6355 33 1 7.5108 5.2167 -1.5479 34 1 7.5917 4.6098 0.1234 35 1 9.0256 4.5180 -0.9276 36 1 7.4871 3.5567 -3.4775 37 1 9.0610 3.0014 -2.8589 38 1 8.1463 0.7129 -2.5861 39 1 6.5724 1.2681 -3.2048 40 1 8.2254 -1.0656 -6.9380 41 1 4.0201 0.3793 -0.0033 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489545.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:47 Heat of formation + Delta-G solvation = -70.634447 kcal Electronic energy + Delta-G solvation = -21858.869615 eV Core-core repulsion = 18460.105072 eV Total energy + Delta-G solvation = -3398.764543 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.90870 -40.28307 -38.01227 -36.85664 -33.56237 -32.38790 -30.82810 -29.97221 -28.80099 -27.46635 -25.49490 -24.66012 -22.99063 -21.34474 -21.00302 -19.82291 -18.03794 -17.48291 -17.07432 -16.52709 -16.10158 -15.65264 -15.27907 -15.00574 -14.78687 -14.35671 -14.06198 -13.88841 -13.29363 -13.02949 -12.98310 -12.83074 -12.54321 -12.51806 -12.30321 -12.04206 -11.86653 -11.52494 -11.35159 -11.08760 -10.95418 -10.75900 -10.40422 -9.82038 -9.58077 -9.43509 -9.19313 -8.97133 -8.38817 -8.25727 -8.00059 -5.90406 -3.86080 0.96972 1.08382 3.00780 3.37437 3.43537 3.49258 3.55615 4.17741 4.41673 4.47244 4.59705 4.65815 4.76920 4.86900 4.89566 5.09064 5.15906 5.20246 5.29822 5.43328 5.45650 5.55530 5.62642 5.71542 5.77099 5.90498 6.03080 6.03318 6.18442 6.25287 6.32724 6.52054 6.56842 6.76270 7.13668 7.14584 7.32429 7.57713 7.66722 7.78146 7.98623 8.70307 9.16041 9.74081 11.23555 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013079 B = 0.005150 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.389812 B = 5436.098865 C = 7136.012824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.119 3.881 4 C -0.185 4.185 5 C -0.114 4.114 6 C 0.064 3.936 7 F -0.140 7.140 8 C -0.065 4.065 9 C 0.097 3.903 10 N -0.669 5.669 11 C 0.081 3.919 12 H 0.074 0.926 13 C -0.180 4.180 14 C -0.089 4.089 15 C -0.007 4.007 16 C -0.516 4.516 17 H 0.068 0.932 18 C 0.064 3.936 19 N -0.910 5.910 20 Si 0.882 3.118 21 H -0.278 1.278 22 H -0.292 1.292 23 H -0.265 1.265 24 C -0.106 4.106 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.340 0.660 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.007 0.993 39 H 0.027 0.973 40 H 0.260 0.740 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.599 6.108 18.207 24.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.074 3.926 4 C -0.204 4.204 5 C -0.132 4.132 6 C 0.044 3.956 7 F -0.119 7.119 8 C -0.067 4.067 9 C -0.032 4.032 10 N -0.299 5.299 11 C -0.028 4.028 12 H 0.092 0.908 13 C -0.239 4.239 14 C -0.127 4.127 15 C -0.044 4.044 16 C -0.554 4.554 17 H 0.086 0.914 18 C -0.136 4.136 19 N -0.550 5.550 20 Si 0.709 3.291 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.190 1.190 24 C -0.125 4.125 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.158 0.842 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.485 5.179 17.823 24.172 hybrid contribution -0.542 0.422 0.752 1.019 sum -16.027 5.601 18.575 25.165 Atomic orbital electron populations 1.23082 0.78327 1.04129 1.01318 1.86122 1.21403 1.26502 1.88637 1.18995 0.92246 0.84350 0.97033 1.21032 1.00237 0.91401 1.07775 1.20842 0.92537 0.98636 1.01227 1.17421 0.90649 0.80304 1.07186 1.91471 1.83318 1.42820 1.94290 1.19688 0.96417 0.91170 0.99406 1.20866 0.88774 1.01870 0.91683 1.60637 1.07337 1.38855 1.23119 1.21804 0.86315 0.95103 0.99608 0.90820 1.22515 1.02159 0.98929 1.00321 1.21449 0.99017 1.00235 0.92035 1.19477 0.97203 0.91708 0.96034 1.21273 1.37701 0.98911 0.97507 0.91415 1.25023 0.95359 0.98578 0.94680 1.69931 1.48100 1.24284 1.12716 0.86742 0.80068 0.81348 0.80895 1.20364 1.21838 1.18980 1.20224 0.91261 0.97928 1.03064 0.92673 0.92481 0.88118 0.84693 0.84600 0.94022 0.89470 0.84188 0.92578 0.93612 0.92023 0.92867 0.92752 0.97478 0.95477 0.93012 0.83922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.61 10.50 -19.56 -0.21 -3.82 16 3 C 0.12 1.44 6.69 -39.23 -0.26 1.17 16 4 C -0.19 -1.88 9.04 -39.44 -0.36 -2.24 16 5 C -0.11 -1.21 10.02 -39.53 -0.40 -1.60 16 6 C 0.06 0.81 7.10 -39.42 -0.28 0.53 16 7 F -0.14 -1.84 16.36 2.25 0.04 -1.80 16 8 C -0.07 -0.87 5.43 -104.58 -0.57 -1.44 16 9 C 0.10 1.31 5.30 -4.98 -0.03 1.29 16 10 N -0.67 -10.68 5.69 -107.99 -0.61 -11.29 16 11 C 0.08 1.31 2.59 -67.71 -0.18 1.14 16 12 H 0.07 1.19 7.80 -51.93 -0.40 0.79 16 13 C -0.18 -2.42 9.16 37.16 0.34 -2.08 16 14 C -0.09 -1.82 4.83 -26.73 -0.13 -1.95 16 15 C -0.01 -0.17 3.93 -27.88 -0.11 -0.28 16 16 C -0.52 -15.34 9.66 -34.44 -0.33 -15.67 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 19 N -0.91 -29.15 13.96 55.43 0.77 -28.38 16 20 Si 0.88 22.92 27.47 -169.99 -4.67 18.25 16 21 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 23 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 24 C -0.11 -1.39 9.60 -39.44 -0.38 -1.77 16 25 H 0.05 0.30 7.66 -51.94 -0.40 -0.10 16 26 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.14 0.98 6.30 -52.48 -0.33 0.65 16 29 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 30 H 0.04 0.52 7.37 -51.93 -0.38 0.14 16 31 H 0.09 1.16 7.86 -51.93 -0.41 0.75 16 32 H 0.34 5.26 7.94 -39.29 -0.31 4.95 16 33 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 34 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.01 0.17 7.20 -51.93 -0.37 -0.20 16 39 H 0.03 0.69 7.18 -51.93 -0.37 0.32 16 40 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 41 H 0.14 1.84 8.00 -52.49 -0.42 1.42 16 LS Contribution 340.82 15.07 5.14 5.14 Total: -1.00 -33.35 340.82 -7.63 -40.98 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.31 Total: 0.81 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -1.78 Total: -19.88 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.16 Total: -39.67 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: -0.21 Total: -3.82 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.67 Total: 18.25 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.35 -7.63 -40.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489545.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.656 kcal (2) G-P(sol) polarization free energy of solvation -33.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds