Wall clock time and date at job start Tue Mar 31 2020 05:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35946 * 116.99707 * 2 1 4 4 C 1.38733 * 120.03390 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.96948 * 179.97438 * 4 3 2 6 6 C 1.38469 * 120.03360 * 0.02562 * 5 4 3 7 7 F 1.35102 * 119.97339 * 179.97438 * 6 5 4 8 8 C 1.38435 * 120.06051 * 359.97438 * 6 5 4 9 9 C 1.50700 * 119.98424 * 179.72636 * 8 6 5 10 10 N 1.46896 * 109.47265 * 284.99562 * 9 8 6 11 11 C 1.46897 * 111.00039 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.47527 * 325.00921 * 11 10 9 13 13 C 1.53008 * 109.46872 * 85.00334 * 11 10 9 14 14 C 1.52992 * 109.47345 * 205.00185 * 11 10 9 15 15 C 1.53003 * 109.47188 * 65.00661 * 14 11 10 16 16 C 1.50706 * 109.47484 * 180.02562 * 15 14 11 17 17 H 1.07998 * 119.99596 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99968 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00137 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99957 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47356 * 89.99853 * 20 18 16 22 22 H 1.48499 * 109.47335 * 210.00156 * 20 18 16 23 23 H 1.48504 * 109.46935 * 330.00099 * 20 18 16 24 24 C 1.38172 * 120.02905 * 0.02562 * 8 6 5 25 25 H 1.09000 * 109.46503 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47434 * 300.00414 * 1 2 3 27 27 H 1.09004 * 109.46700 * 60.00825 * 1 2 3 28 28 H 1.07997 * 120.01078 * 359.96698 * 4 3 2 29 29 H 1.08000 * 119.98352 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47283 * 45.00379 * 9 8 6 31 31 H 1.09003 * 109.46984 * 164.99744 * 9 8 6 32 32 H 1.00895 * 111.00231 * 303.95805 * 10 9 8 33 33 H 1.09000 * 109.46966 * 179.97438 * 13 11 10 34 34 H 1.08991 * 109.47081 * 300.00319 * 13 11 10 35 35 H 1.09004 * 109.46565 * 59.99998 * 13 11 10 36 36 H 1.09003 * 109.47680 * 185.00205 * 14 11 10 37 37 H 1.09000 * 109.47555 * 305.00722 * 14 11 10 38 38 H 1.09008 * 109.46765 * 299.99645 * 15 14 11 39 39 H 1.09000 * 109.47346 * 59.99558 * 15 14 11 40 40 H 0.96997 * 120.00149 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.01686 * 179.97438 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2912 2.3752 -0.0005 5 6 1.9196 3.6053 0.0000 6 6 3.3024 3.6771 0.0005 7 9 3.9158 4.8808 0.0005 8 6 4.0571 2.5165 0.0011 9 6 5.5619 2.5966 -0.0046 10 7 6.0270 2.9767 -1.3451 11 6 7.4927 3.0654 -1.3883 12 1 7.8622 3.4424 -0.4346 13 6 8.0801 1.6770 -1.6499 14 6 7.9132 4.0167 -2.5103 15 6 7.4316 5.4323 -2.1860 16 6 7.8453 6.3694 -3.2914 17 1 8.3970 5.9929 -4.1402 18 6 7.5195 7.7071 -3.2192 19 7 6.8473 8.1654 -2.1859 20 14 8.0329 8.8687 -4.5890 21 1 6.9660 8.9197 -5.6208 22 1 8.2473 10.2281 -4.0311 23 1 9.2937 8.3817 -5.2044 24 6 3.4311 1.2847 0.0005 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 0.2127 2.3195 -0.0015 29 1 1.3321 4.5115 -0.0008 30 1 5.8888 3.3436 0.7189 31 1 5.9785 1.6254 0.2627 32 1 5.6826 2.3346 -2.0430 33 1 9.1676 1.7429 -1.6824 34 1 7.7805 0.9993 -0.8507 35 1 7.7106 1.3001 -2.6036 36 1 8.9995 4.0144 -2.6007 37 1 7.4697 3.6886 -3.4503 38 1 6.3453 5.4347 -2.0957 39 1 7.8751 5.7606 -1.2459 40 1 6.6185 9.1066 -2.1349 41 1 4.0200 0.3794 0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489546.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:49 Heat of formation + Delta-G solvation = -71.367149 kcal Electronic energy + Delta-G solvation = -21794.631039 eV Core-core repulsion = 18395.834723 eV Total energy + Delta-G solvation = -3398.796316 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.35286 -40.19937 -37.90554 -36.71867 -33.45983 -32.33984 -30.61140 -29.67705 -28.56700 -27.40072 -25.28721 -24.54314 -22.76071 -21.34344 -21.10460 -19.76230 -17.93737 -17.15913 -16.91177 -16.04142 -15.99837 -15.36318 -15.00045 -14.78031 -14.70752 -14.32446 -14.06287 -13.68494 -13.26326 -12.88590 -12.80918 -12.62279 -12.51245 -12.28549 -12.17453 -11.92659 -11.56167 -11.30243 -11.09662 -10.94276 -10.84321 -10.72401 -10.39320 -10.14716 -9.56230 -9.13496 -9.08682 -8.82325 -8.15764 -8.05262 -7.84620 -5.80167 -3.81456 1.07511 1.25627 3.04304 3.41851 3.47508 3.50435 3.50836 4.44938 4.53647 4.60178 4.61885 4.78607 4.84036 4.87981 4.95753 5.17910 5.25443 5.34449 5.39792 5.54606 5.58414 5.62955 5.70794 5.75043 5.94338 6.08256 6.11379 6.13411 6.30015 6.33627 6.46239 6.70173 6.72972 6.95071 7.20271 7.37241 7.51748 7.83151 7.92997 8.16952 8.34336 8.65741 9.27934 9.80478 11.30580 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020020 B = 0.003904 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.288335 B = 7171.310302 C = 8090.750268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.106 3.894 4 C -0.181 4.181 5 C -0.122 4.122 6 C 0.099 3.901 7 F -0.117 7.117 8 C -0.080 4.080 9 C 0.101 3.899 10 N -0.664 5.664 11 C 0.085 3.915 12 H 0.073 0.927 13 C -0.181 4.181 14 C -0.097 4.097 15 C 0.029 3.971 16 C -0.518 4.518 17 H 0.050 0.950 18 C 0.056 3.944 19 N -0.892 5.892 20 Si 0.885 3.115 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.276 1.276 24 C -0.119 4.119 25 H 0.098 0.902 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.133 0.867 29 H 0.138 0.862 30 H 0.086 0.914 31 H 0.038 0.962 32 H 0.336 0.664 33 H 0.059 0.941 34 H 0.044 0.956 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.035 0.965 39 H 0.006 0.994 40 H 0.257 0.743 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.795 -17.261 6.905 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.061 3.939 4 C -0.200 4.200 5 C -0.141 4.141 6 C 0.079 3.921 7 F -0.095 7.095 8 C -0.081 4.081 9 C -0.028 4.028 10 N -0.294 5.294 11 C -0.025 4.025 12 H 0.091 0.909 13 C -0.240 4.240 14 C -0.136 4.136 15 C -0.008 4.008 16 C -0.557 4.557 17 H 0.068 0.932 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.714 3.286 21 H -0.209 1.209 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.138 4.138 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.151 0.849 29 H 0.156 0.844 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.154 0.846 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.025 0.975 40 H 0.067 0.933 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.828 -16.557 7.089 21.547 hybrid contribution 0.233 0.157 -0.759 0.810 sum -11.594 -16.400 6.329 21.058 Atomic orbital electron populations 1.23048 0.78496 1.03846 1.01397 1.86068 1.21266 1.26718 1.89102 1.18891 0.92143 0.84199 0.98623 1.21018 1.00086 0.91440 1.07410 1.20982 0.92959 0.98683 1.01443 1.17460 0.90233 0.81260 1.03128 1.91645 1.82980 1.41562 1.93308 1.19753 0.96556 0.91179 1.00611 1.20817 0.88594 0.99781 0.93598 1.60516 1.10473 1.54969 1.03453 1.21756 0.85735 0.93866 1.01105 0.90884 1.22545 1.01921 0.98613 1.00882 1.21625 0.98631 0.97743 0.95557 1.18998 0.97898 0.88255 0.95619 1.21347 1.34954 0.93258 1.06096 0.93205 1.24998 0.95523 0.98312 0.95610 1.69992 1.39741 1.14208 1.29236 0.86708 0.78834 0.80495 0.82582 1.20851 1.21404 1.20091 1.20135 0.91279 0.97458 1.04917 0.88333 0.92679 0.92585 0.84889 0.84448 0.89559 0.94387 0.84581 0.92192 0.93727 0.92762 0.93520 0.93524 0.94711 0.97537 0.93325 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.34 10.50 -19.57 -0.21 -3.55 16 3 C 0.11 1.24 6.69 -39.23 -0.26 0.98 16 4 C -0.18 -1.98 9.04 -39.44 -0.36 -2.34 16 5 C -0.12 -1.57 10.02 -39.54 -0.40 -1.96 16 6 C 0.10 1.56 7.24 -39.42 -0.29 1.27 16 7 F -0.12 -2.28 16.75 2.25 0.04 -2.24 16 8 C -0.08 -1.13 5.40 -104.57 -0.56 -1.69 16 9 C 0.10 1.47 5.29 -4.98 -0.03 1.44 16 10 N -0.66 -11.16 5.69 -107.99 -0.61 -11.77 16 11 C 0.08 1.45 2.59 -67.71 -0.18 1.28 16 12 H 0.07 1.30 7.80 -51.93 -0.40 0.90 16 13 C -0.18 -2.45 9.16 37.16 0.34 -2.11 16 14 C -0.10 -2.08 4.83 -26.73 -0.13 -2.21 16 15 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 16 C -0.52 -15.38 9.11 -34.44 -0.31 -15.70 16 17 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -28.08 13.29 55.43 0.74 -27.35 16 20 Si 0.89 22.56 29.54 -169.99 -5.02 17.54 16 21 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 C -0.12 -1.45 9.61 -39.44 -0.38 -1.83 16 25 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 27 H 0.06 0.32 7.66 -51.93 -0.40 -0.07 16 28 H 0.13 1.08 6.30 -52.49 -0.33 0.75 16 29 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 30 H 0.09 1.36 7.99 -51.93 -0.41 0.95 16 31 H 0.04 0.47 7.25 -51.93 -0.38 0.09 16 32 H 0.34 5.20 8.46 -39.29 -0.33 4.87 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.53 7.45 -51.93 -0.39 0.15 16 35 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.03 1.02 7.75 -51.92 -0.40 0.62 16 39 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 41 H 0.14 1.43 8.00 -52.49 -0.42 1.02 16 LS Contribution 345.45 15.07 5.21 5.21 Total: -1.00 -33.44 345.45 -8.01 -41.45 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.36 Total: 0.17 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -1.79 Total: -19.45 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.12 Total: -39.12 kcal Atomic # 8 Polarization: -3.34 SS G_CDS: -0.21 Total: -3.55 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.44 -8.01 -41.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489546.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.918 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds