Wall clock time and date at job start Tue Mar 31 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35891 * 117.00396 * 2 1 4 4 C 1.38717 * 120.04152 * 359.72814 * 3 2 1 5 5 C 1.38342 * 119.92321 * 179.74157 * 4 3 2 6 6 F 1.35093 * 120.00396 * 180.27892 * 5 4 3 7 7 C 1.38529 * 120.00061 * 0.50773 * 5 4 3 8 8 C 1.38204 * 120.08391 * 359.77217 * 7 5 4 9 9 C 1.38177 * 120.08196 * 359.96864 * 8 7 5 10 10 C 1.50704 * 120.00331 * 179.97438 * 9 8 7 11 11 N 1.46902 * 109.47408 * 260.02772 * 10 9 8 12 12 C 1.46895 * 111.00116 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.47179 * 35.00055 * 12 11 10 14 14 C 1.52999 * 109.47254 * 275.00162 * 12 11 10 15 15 C 1.52998 * 109.47317 * 154.99836 * 12 11 10 16 16 C 1.52998 * 109.47032 * 295.00429 * 15 12 11 17 17 C 1.50700 * 109.47043 * 179.97438 * 16 15 12 18 18 H 1.08001 * 119.99994 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00079 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00064 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00046 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46999 * 60.00283 * 21 19 17 23 23 H 1.48507 * 109.46879 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47533 * 300.00070 * 21 19 17 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99709 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99830 * 1 2 3 28 28 H 1.08008 * 120.03675 * 359.97438 * 4 3 2 29 29 H 1.07995 * 119.95679 * 179.74429 * 7 5 4 30 30 H 1.08004 * 119.96187 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.46884 * 20.02676 * 10 9 8 32 32 H 1.08992 * 109.47112 * 140.02307 * 10 9 8 33 33 H 1.00897 * 110.99712 * 303.95591 * 11 10 9 34 34 H 1.09003 * 109.47212 * 179.97438 * 14 12 11 35 35 H 1.09005 * 109.46940 * 300.00040 * 14 12 11 36 36 H 1.08995 * 109.47156 * 59.99837 * 14 12 11 37 37 H 1.09000 * 109.46764 * 54.99729 * 15 12 11 38 38 H 1.08992 * 109.47316 * 175.00093 * 15 12 11 39 39 H 1.09004 * 109.47139 * 299.99656 * 16 15 12 40 40 H 1.09003 * 109.47723 * 59.99986 * 16 15 12 41 41 H 0.97001 * 120.00090 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3747 -0.0057 5 6 1.9221 3.6060 -0.0003 6 9 1.1888 4.7406 -0.0001 7 6 3.3057 3.6756 0.0002 8 6 4.0576 2.5161 0.0000 9 6 3.4313 1.2844 0.0000 10 6 4.2530 0.0211 -0.0008 11 7 4.3183 -0.5198 -1.3650 12 6 5.1138 -1.7541 -1.4044 13 1 4.9590 -2.3157 -0.4831 14 6 6.5960 -1.4014 -1.5438 15 6 4.6773 -2.6043 -2.5992 16 6 3.2309 -3.0611 -2.3989 17 6 2.8008 -3.8979 -3.5760 18 1 3.4903 -4.0856 -4.3859 19 6 1.5274 -4.4249 -3.6187 20 7 0.6883 -4.1976 -2.6318 21 14 0.9945 -5.4628 -5.0775 22 1 1.8783 -6.6509 -5.1889 23 1 -0.4091 -5.9071 -4.8825 24 1 1.0907 -4.6561 -6.3206 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 0.2128 2.3197 -0.0106 29 1 3.7972 4.6372 0.0003 30 1 5.1362 2.5726 0.0000 31 1 5.2607 0.2429 0.3507 32 1 3.7914 -0.7130 0.6595 33 1 3.3933 -0.6733 -1.7377 34 1 7.1863 -2.3173 -1.5726 35 1 6.7508 -0.8398 -2.4651 36 1 6.9070 -0.7958 -0.6926 37 1 4.7482 -2.0121 -3.5116 38 1 5.3258 -3.4765 -2.6808 39 1 3.1600 -3.6532 -1.4864 40 1 2.5823 -2.1888 -2.3174 41 1 -0.2075 -4.5686 -2.6617 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489912.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:56 Heat of formation + Delta-G solvation = -76.194171 kcal Electronic energy + Delta-G solvation = -22095.309463 eV Core-core repulsion = 18696.303832 eV Total energy + Delta-G solvation = -3399.005631 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.96411 -40.20307 -37.47493 -36.82804 -33.46463 -32.28254 -30.40849 -29.80644 -28.79050 -27.23882 -25.35289 -24.32108 -22.51186 -21.53456 -21.14244 -19.46599 -18.40582 -17.05853 -16.41851 -15.93940 -15.85564 -15.63475 -15.34663 -15.04904 -14.58561 -14.50780 -14.46336 -13.98286 -13.17579 -12.99986 -12.58066 -12.46205 -12.24486 -12.06533 -11.93339 -11.60092 -11.39121 -11.35273 -11.20863 -10.96054 -10.91784 -10.81205 -10.48274 -10.19758 -9.71394 -9.23737 -9.01708 -8.88665 -8.33102 -8.20807 -7.85650 -5.98660 -4.00061 1.09115 1.28139 3.31757 3.33821 3.37615 3.40893 3.53268 4.18211 4.46984 4.66656 4.72649 4.91307 4.95815 5.13058 5.23570 5.31965 5.37177 5.48588 5.53902 5.71584 5.75628 5.75843 5.88131 5.97842 5.99350 6.08675 6.16448 6.23165 6.40116 6.44750 6.55757 6.59598 6.70436 6.96207 7.14006 7.37303 7.57367 7.67185 7.85715 7.97033 8.04507 8.45466 9.06428 9.63446 11.12264 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016304 B = 0.004600 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.968495 B = 6085.290333 C = 7323.992045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.296 6.296 3 C 0.168 3.832 4 C -0.249 4.249 5 C 0.132 3.868 6 F -0.142 7.142 7 C -0.196 4.196 8 C -0.037 4.037 9 C -0.118 4.118 10 C 0.107 3.893 11 N -0.681 5.681 12 C 0.082 3.918 13 H 0.038 0.962 14 C -0.136 4.136 15 C -0.115 4.115 16 C 0.022 3.978 17 C -0.518 4.518 18 H 0.054 0.946 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.890 3.110 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.110 0.890 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.139 0.861 29 H 0.134 0.866 30 H 0.139 0.861 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.355 0.645 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.012 0.988 40 H 0.017 0.983 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.885 13.524 8.164 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.208 6.208 3 C 0.121 3.879 4 C -0.269 4.269 5 C 0.112 3.888 6 F -0.120 7.120 7 C -0.215 4.215 8 C -0.056 4.056 9 C -0.119 4.119 10 C -0.022 4.022 11 N -0.316 5.316 12 C -0.027 4.027 13 H 0.056 0.944 14 C -0.194 4.194 15 C -0.152 4.152 16 C -0.015 4.015 17 C -0.556 4.556 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.128 0.872 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.157 0.843 29 H 0.151 0.849 30 H 0.157 0.843 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.178 0.822 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.030 0.970 40 H 0.036 0.964 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.265 13.700 8.030 16.443 hybrid contribution -1.552 -0.816 -0.398 1.798 sum 2.713 12.884 7.632 15.219 Atomic orbital electron populations 1.23152 0.77658 1.05086 1.00773 1.86238 1.21941 1.25309 1.87338 1.18700 0.91701 0.84249 0.93292 1.21124 1.01147 0.91203 1.13389 1.17365 0.89244 0.81315 1.00857 1.91480 1.77525 1.49201 1.93806 1.20971 0.91667 1.00062 1.08839 1.20693 1.00045 0.89899 0.94968 1.19328 0.90290 0.96344 1.05948 1.20686 0.97807 0.92044 0.91630 1.60712 1.21626 1.30291 1.18982 1.21603 0.92924 0.89342 0.98881 0.94424 1.21792 0.95751 1.00451 1.01373 1.21825 1.00097 0.97432 0.95892 1.19110 0.89632 0.95966 0.96824 1.21219 0.97777 1.31312 1.05317 0.92821 1.24996 0.96780 0.96498 0.96030 1.69961 1.06373 1.45527 1.31571 0.86697 0.77498 0.80803 0.83222 1.20309 1.21370 1.20274 0.87176 0.92433 0.93023 0.84318 0.84856 0.84342 0.90741 0.93973 0.82249 0.93095 0.92409 0.93823 0.92569 0.92810 0.96996 0.96434 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.36 16 2 O -0.30 -4.80 9.67 -19.40 -0.19 -4.98 16 3 C 0.17 2.49 6.65 -39.23 -0.26 2.23 16 4 C -0.25 -3.32 9.02 -39.37 -0.35 -3.68 16 5 C 0.13 1.70 7.30 -39.44 -0.29 1.41 16 6 F -0.14 -1.83 17.27 2.25 0.04 -1.79 16 7 C -0.20 -2.26 10.02 -39.49 -0.40 -2.66 16 8 C -0.04 -0.44 9.66 -39.62 -0.38 -0.82 16 9 C -0.12 -1.66 5.41 -104.46 -0.56 -2.23 16 10 C 0.11 1.59 5.27 -4.97 -0.03 1.57 16 11 N -0.68 -11.77 6.30 -107.99 -0.68 -12.45 16 12 C 0.08 1.44 2.65 -67.72 -0.18 1.26 16 13 H 0.04 0.69 7.80 -51.93 -0.41 0.28 16 14 C -0.14 -1.98 9.41 37.16 0.35 -1.63 16 15 C -0.11 -2.39 4.74 -26.73 -0.13 -2.51 16 16 C 0.02 0.56 4.80 -27.88 -0.13 0.42 16 17 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 21 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 25 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 26 H 0.06 0.70 7.65 -51.93 -0.40 0.31 16 27 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 28 H 0.14 1.63 6.30 -52.48 -0.33 1.30 16 29 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 30 H 0.14 1.31 8.04 -52.48 -0.42 0.89 16 31 H 0.07 0.96 7.30 -51.93 -0.38 0.58 16 32 H 0.04 0.68 7.77 -51.93 -0.40 0.28 16 33 H 0.36 7.06 6.41 -39.29 -0.25 6.81 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.04 0.56 7.45 -51.93 -0.39 0.18 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.02 0.47 6.43 -51.93 -0.33 0.14 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 342.47 15.07 5.16 5.16 Total: -1.00 -30.07 342.47 -7.94 -38.02 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.21 Total: 3.75 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -1.78 Total: -18.70 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.06 Total: -38.06 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.19 Total: -4.98 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.07 -7.94 -38.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489912.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.179 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds