Wall clock time and date at job start Tue Mar 31 2020 05:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35891 * 117.00396 * 2 1 4 4 C 1.38717 * 120.04152 * 359.72814 * 3 2 1 5 5 C 1.38342 * 119.92321 * 179.74157 * 4 3 2 6 6 F 1.35093 * 120.00396 * 180.27892 * 5 4 3 7 7 C 1.38529 * 120.00061 * 0.50773 * 5 4 3 8 8 C 1.38204 * 120.08391 * 359.77217 * 7 5 4 9 9 C 1.38177 * 120.08196 * 359.96864 * 8 7 5 10 10 C 1.50704 * 120.00331 * 179.97438 * 9 8 7 11 11 N 1.46902 * 109.47408 * 260.02772 * 10 9 8 12 12 C 1.46895 * 111.00116 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.47179 * 35.00055 * 12 11 10 14 14 C 1.52999 * 109.47254 * 275.00162 * 12 11 10 15 15 C 1.52998 * 109.47317 * 154.99836 * 12 11 10 16 16 C 1.52998 * 109.47032 * 295.00429 * 15 12 11 17 17 C 1.50700 * 109.47043 * 179.97438 * 16 15 12 18 18 H 1.08001 * 119.99994 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00079 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00064 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00046 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46999 * 60.00283 * 21 19 17 23 23 H 1.48507 * 109.46879 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47533 * 300.00070 * 21 19 17 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99709 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99830 * 1 2 3 28 28 H 1.08008 * 120.03675 * 359.97438 * 4 3 2 29 29 H 1.07995 * 119.95679 * 179.74429 * 7 5 4 30 30 H 1.08004 * 119.96187 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.46884 * 20.02676 * 10 9 8 32 32 H 1.08992 * 109.47112 * 140.02307 * 10 9 8 33 33 H 1.00897 * 110.99712 * 303.95591 * 11 10 9 34 34 H 1.09003 * 109.47212 * 179.97438 * 14 12 11 35 35 H 1.09005 * 109.46940 * 300.00040 * 14 12 11 36 36 H 1.08995 * 109.47156 * 59.99837 * 14 12 11 37 37 H 1.09000 * 109.46764 * 54.99729 * 15 12 11 38 38 H 1.08992 * 109.47316 * 175.00093 * 15 12 11 39 39 H 1.09004 * 109.47139 * 299.99656 * 16 15 12 40 40 H 1.09003 * 109.47723 * 59.99986 * 16 15 12 41 41 H 0.97001 * 120.00090 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3747 -0.0057 5 6 1.9221 3.6060 -0.0003 6 9 1.1888 4.7406 -0.0001 7 6 3.3057 3.6756 0.0002 8 6 4.0576 2.5161 0.0000 9 6 3.4313 1.2844 0.0000 10 6 4.2530 0.0211 -0.0008 11 7 4.3183 -0.5198 -1.3650 12 6 5.1138 -1.7541 -1.4044 13 1 4.9590 -2.3157 -0.4831 14 6 6.5960 -1.4014 -1.5438 15 6 4.6773 -2.6043 -2.5992 16 6 3.2309 -3.0611 -2.3989 17 6 2.8008 -3.8979 -3.5760 18 1 3.4903 -4.0856 -4.3859 19 6 1.5274 -4.4249 -3.6187 20 7 0.6883 -4.1976 -2.6318 21 14 0.9945 -5.4628 -5.0775 22 1 1.8783 -6.6509 -5.1889 23 1 -0.4091 -5.9071 -4.8825 24 1 1.0907 -4.6561 -6.3206 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 0.2128 2.3197 -0.0106 29 1 3.7972 4.6372 0.0003 30 1 5.1362 2.5726 0.0000 31 1 5.2607 0.2429 0.3507 32 1 3.7914 -0.7130 0.6595 33 1 3.3933 -0.6733 -1.7377 34 1 7.1863 -2.3173 -1.5726 35 1 6.7508 -0.8398 -2.4651 36 1 6.9070 -0.7958 -0.6926 37 1 4.7482 -2.0121 -3.5116 38 1 5.3258 -3.4765 -2.6808 39 1 3.1600 -3.6532 -1.4864 40 1 2.5823 -2.1888 -2.3174 41 1 -0.2075 -4.5686 -2.6617 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489912.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:55 Heat of formation + Delta-G solvation = -93.851562 kcal Electronic energy + Delta-G solvation = -22096.075145 eV Core-core repulsion = 18696.303832 eV Total energy + Delta-G solvation = -3399.771313 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.96490 -41.26947 -38.71669 -38.09377 -35.34121 -33.81610 -31.58983 -31.28300 -30.09134 -28.30422 -27.09329 -25.69234 -23.50991 -23.22579 -22.35586 -21.01829 -19.45058 -18.52222 -18.09147 -17.04019 -16.97088 -16.77663 -16.55194 -16.46525 -16.31689 -15.86597 -15.55194 -15.02062 -14.54035 -14.34527 -14.27163 -14.05870 -13.38285 -13.28638 -13.21980 -12.98951 -12.92445 -12.80660 -12.57955 -12.39626 -12.32149 -12.07127 -11.95072 -11.75963 -11.55388 -11.27691 -10.92289 -10.51903 -9.90279 -9.36741 -9.12908 -8.17348 -6.27848 0.07524 0.29171 1.39578 1.42197 1.49752 2.27804 2.41608 2.51662 3.14865 3.18490 3.48105 3.70703 3.84015 3.99677 4.07480 4.13329 4.24089 4.29715 4.37540 4.50396 4.53208 4.63068 4.68606 4.78521 4.82172 4.98832 5.02545 5.04839 5.09767 5.13274 5.19023 5.27044 5.42122 5.49761 5.57183 5.73516 5.74704 5.87292 6.23938 6.28272 6.34664 6.44914 6.87931 7.40443 8.93430 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016304 B = 0.004600 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.968495 B = 6085.290333 C = 7323.992045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.328 6.328 3 C 0.147 3.853 4 C -0.255 4.255 5 C 0.122 3.878 6 F -0.142 7.142 7 C -0.187 4.187 8 C -0.029 4.029 9 C -0.135 4.135 10 C 0.111 3.889 11 N -0.680 5.680 12 C 0.085 3.915 13 H 0.026 0.974 14 C -0.126 4.126 15 C -0.103 4.103 16 C 0.032 3.968 17 C -0.545 4.545 18 H 0.056 0.944 19 C 0.004 3.996 20 N -0.927 5.927 21 Si 0.960 3.040 22 H -0.268 1.268 23 H -0.283 1.283 24 H -0.269 1.269 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.148 0.852 29 H 0.163 0.837 30 H 0.169 0.831 31 H 0.101 0.899 32 H 0.021 0.979 33 H 0.336 0.664 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.057 0.943 39 H -0.019 1.019 40 H -0.003 1.003 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.349 14.695 7.716 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.241 6.241 3 C 0.100 3.900 4 C -0.274 4.274 5 C 0.103 3.897 6 F -0.121 7.121 7 C -0.205 4.205 8 C -0.047 4.047 9 C -0.136 4.136 10 C -0.017 4.017 11 N -0.312 5.312 12 C -0.024 4.024 13 H 0.044 0.956 14 C -0.184 4.184 15 C -0.141 4.141 16 C -0.005 4.005 17 C -0.583 4.583 18 H 0.075 0.925 19 C -0.194 4.194 20 N -0.567 5.567 21 Si 0.785 3.215 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.194 1.194 25 H 0.116 0.884 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.165 0.835 29 H 0.181 0.819 30 H 0.187 0.813 31 H 0.119 0.881 32 H 0.039 0.961 33 H 0.155 0.845 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.076 0.924 39 H -0.001 1.001 40 H 0.015 0.985 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.752 14.882 7.590 17.668 hybrid contribution -2.033 -1.136 -0.218 2.339 sum 3.718 13.746 7.372 16.035 Atomic orbital electron populations 1.23227 0.76728 1.04745 1.02212 1.86186 1.23259 1.26730 1.87928 1.18931 0.92319 0.84130 0.94628 1.21228 1.01720 0.91128 1.13324 1.17554 0.90015 0.81030 1.01105 1.91479 1.77697 1.49081 1.93835 1.21308 0.91009 1.01288 1.06940 1.21010 1.01521 0.88795 0.93409 1.19467 0.90069 0.96928 1.07138 1.20713 0.99241 0.91945 0.89825 1.60842 1.20228 1.29704 1.20472 1.21570 0.95183 0.89083 0.96601 0.95572 1.21702 0.92873 1.01403 1.02391 1.21657 0.96926 0.98104 0.97402 1.18943 0.92514 0.94365 0.94723 1.21653 0.98376 1.32051 1.06172 0.92532 1.25901 0.96816 0.97696 0.98975 1.70094 1.06742 1.46350 1.33464 0.85586 0.77228 0.79152 0.79577 1.19346 1.20786 1.19384 0.88434 0.92093 0.90438 0.83457 0.81933 0.81341 0.88060 0.96113 0.84463 0.92024 0.92285 0.91624 0.92827 0.92407 1.00083 0.98519 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.81 113.37 1.11 1.81 16 2 O -0.33 -11.24 9.67 -92.32 -0.89 -12.14 16 3 C 0.15 4.41 6.65 22.50 0.15 4.56 16 4 C -0.25 -6.71 9.02 22.41 0.20 -6.51 16 5 C 0.12 2.97 7.30 22.36 0.16 3.13 16 6 F -0.14 -3.45 17.27 44.97 0.78 -2.68 16 7 C -0.19 -3.78 10.02 22.33 0.22 -3.55 16 8 C -0.03 -0.61 9.66 22.25 0.21 -0.39 16 9 C -0.13 -3.71 5.41 -19.76 -0.11 -3.82 16 10 C 0.11 3.26 5.27 85.56 0.45 3.71 16 11 N -0.68 -23.53 6.30 -495.58 -3.12 -26.65 16 12 C 0.09 2.97 2.65 44.92 0.12 3.09 16 13 H 0.03 0.97 7.80 -2.38 -0.02 0.95 16 14 C -0.13 -3.36 9.41 71.98 0.68 -2.68 16 15 C -0.10 -4.35 4.74 30.59 0.15 -4.20 16 16 C 0.03 1.69 4.80 29.85 0.14 1.84 16 17 C -0.54 -31.44 9.11 25.60 0.23 -31.20 16 18 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 19 C 0.00 0.25 5.46 84.65 0.46 0.71 16 20 N -0.93 -56.00 13.29 21.45 0.28 -55.72 16 21 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 25 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 26 H 0.06 1.57 7.65 -2.39 -0.02 1.56 16 27 H 0.08 1.66 7.67 -2.38 -0.02 1.64 16 28 H 0.15 3.45 6.30 -2.91 -0.02 3.43 16 29 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.17 2.47 8.04 -2.91 -0.02 2.45 16 31 H 0.10 2.37 7.30 -2.39 -0.02 2.35 16 32 H 0.02 0.69 7.77 -2.39 -0.02 0.67 16 33 H 0.34 13.93 6.41 -89.70 -0.57 13.35 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.06 1.48 7.45 -2.39 -0.02 1.46 16 37 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 40 H 0.00 -0.20 6.43 -2.39 -0.02 -0.21 16 41 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -66.01 342.47 3.71 -62.30 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.45 Total: 21.83 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: 4.19 Total: -33.52 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -2.84 Total: -82.37 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.89 Total: -12.14 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.01 3.71 -62.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489912.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.555 kcal (2) G-P(sol) polarization free energy of solvation -66.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds