Wall clock time and date at job start Tue Mar 31 2020 05:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35891 * 117.00396 * 2 1 4 4 C 1.38717 * 120.04152 * 359.72814 * 3 2 1 5 5 C 1.38342 * 119.92272 * 179.76942 * 4 3 2 6 6 F 1.35100 * 120.00040 * 180.23097 * 5 4 3 7 7 C 1.38522 * 120.00214 * 0.50539 * 5 4 3 8 8 C 1.38213 * 120.08629 * 359.74477 * 7 5 4 9 9 C 1.38177 * 120.07601 * 0.02562 * 8 7 5 10 10 C 1.50702 * 120.00084 * 179.97438 * 9 8 7 11 11 N 1.46902 * 109.47260 * 260.02849 * 10 9 8 12 12 C 1.46898 * 110.99957 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.46719 * 324.99592 * 12 11 10 14 14 C 1.53004 * 109.47300 * 84.99430 * 12 11 10 15 15 C 1.53001 * 109.47187 * 204.99808 * 12 11 10 16 16 C 1.52999 * 109.46873 * 64.99780 * 15 12 11 17 17 C 1.50703 * 109.46711 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00362 * 0.02562 * 17 16 15 19 19 C 1.37883 * 120.00051 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99655 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00169 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47455 * 59.99990 * 21 19 17 23 23 H 1.48506 * 109.47197 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47309 * 300.00091 * 21 19 17 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99709 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99830 * 1 2 3 28 28 H 1.08004 * 120.03630 * 0.02562 * 4 3 2 29 29 H 1.07995 * 119.96054 * 179.72810 * 7 5 4 30 30 H 1.07995 * 119.95755 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47102 * 20.02479 * 10 9 8 32 32 H 1.08999 * 109.47014 * 140.02420 * 10 9 8 33 33 H 1.00895 * 111.00081 * 56.04159 * 11 10 9 34 34 H 1.09000 * 109.47021 * 179.97438 * 14 12 11 35 35 H 1.08993 * 109.47019 * 300.00179 * 14 12 11 36 36 H 1.08997 * 109.46641 * 60.00188 * 14 12 11 37 37 H 1.08992 * 109.47243 * 185.00004 * 15 12 11 38 38 H 1.09000 * 109.46675 * 305.00025 * 15 12 11 39 39 H 1.08995 * 109.47303 * 299.99622 * 16 15 12 40 40 H 1.09000 * 109.47270 * 60.00609 * 16 15 12 41 41 H 0.97005 * 120.00327 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3747 -0.0057 5 6 1.9221 3.6060 -0.0009 6 9 1.1888 4.7406 -0.0017 7 6 3.3056 3.6756 -0.0009 8 6 4.0577 2.5160 -0.0005 9 6 3.4313 1.2844 -0.0005 10 6 4.2530 0.0211 -0.0006 11 7 4.3190 -0.5201 -1.3647 12 6 5.1134 -1.7551 -1.4033 13 1 5.9311 -1.6836 -0.6860 14 6 4.2226 -2.9461 -1.0441 15 6 5.6841 -1.9507 -2.8093 16 6 6.6717 -0.8242 -3.1201 17 6 7.2333 -1.0166 -4.5053 18 1 6.9172 -1.8579 -5.1042 19 6 8.1500 -0.1179 -5.0085 20 7 8.5345 0.9069 -4.2795 21 14 8.8455 -0.3559 -6.7257 22 1 7.7391 -0.3319 -7.7158 23 1 9.8042 0.7375 -7.0274 24 1 9.5470 -1.6627 -6.7989 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 0.2128 2.3197 -0.0097 29 1 3.7972 4.6372 -0.0016 30 1 5.1362 2.5727 -0.0009 31 1 5.2605 0.2430 0.3512 32 1 3.7910 -0.7129 0.6596 33 1 4.6842 0.1655 -2.0085 34 1 4.8121 -3.8625 -1.0732 35 1 3.8161 -2.8067 -0.0425 36 1 3.4050 -3.0175 -1.7614 37 1 6.1988 -2.9100 -2.8623 38 1 4.8724 -1.9332 -3.5365 39 1 6.1569 0.1351 -3.0672 40 1 7.4834 -0.8417 -2.3929 41 1 9.1797 1.5390 -4.6333 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489913.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:57 Heat of formation + Delta-G solvation = -92.654271 kcal Electronic energy + Delta-G solvation = -21832.633352 eV Core-core repulsion = 18432.913957 eV Total energy + Delta-G solvation = -3399.719394 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.97723 -41.20654 -38.73880 -38.04451 -35.34285 -33.81925 -31.59717 -31.26149 -30.12514 -28.15554 -27.10561 -25.71654 -23.49994 -23.22782 -22.35842 -21.02130 -19.43489 -18.52267 -18.06542 -16.99984 -16.93474 -16.81448 -16.57312 -16.48143 -16.27607 -15.80347 -15.46410 -14.89496 -14.56294 -14.43458 -14.28450 -14.07860 -13.48964 -13.26212 -13.18941 -13.00062 -12.84800 -12.79844 -12.53490 -12.38218 -12.29970 -12.07328 -11.90813 -11.76217 -11.54455 -11.27636 -10.92509 -10.51919 -9.91966 -9.27687 -9.15085 -8.18190 -6.28182 0.04961 0.28839 1.40655 1.43060 1.50843 2.33204 2.42243 2.50312 3.14924 3.18063 3.45262 3.70654 3.79560 4.00940 4.11233 4.13425 4.34800 4.38888 4.42117 4.48124 4.54063 4.58757 4.75058 4.76296 4.82642 4.98885 5.01006 5.05488 5.08690 5.13096 5.18530 5.25330 5.39043 5.49239 5.56859 5.71253 5.74047 5.86881 6.25687 6.28906 6.40950 6.48928 6.87820 7.40525 8.92871 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016243 B = 0.004114 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.372178 B = 6804.434712 C = 7942.432839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.310 6.310 3 C 0.174 3.826 4 C -0.250 4.250 5 C 0.125 3.875 6 F -0.142 7.142 7 C -0.194 4.194 8 C -0.051 4.051 9 C -0.137 4.137 10 C 0.114 3.886 11 N -0.679 5.679 12 C 0.088 3.912 13 H 0.031 0.969 14 C -0.124 4.124 15 C -0.101 4.101 16 C 0.028 3.972 17 C -0.544 4.544 18 H 0.056 0.944 19 C 0.003 3.997 20 N -0.930 5.930 21 Si 0.960 3.040 22 H -0.269 1.269 23 H -0.283 1.283 24 H -0.268 1.268 25 H 0.118 0.882 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.159 0.841 29 H 0.151 0.849 30 H 0.145 0.855 31 H 0.034 0.966 32 H 0.085 0.915 33 H 0.336 0.664 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.052 0.948 39 H -0.001 1.001 40 H -0.014 1.014 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.848 0.783 11.932 19.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.222 6.222 3 C 0.127 3.873 4 C -0.269 4.269 5 C 0.105 3.895 6 F -0.120 7.120 7 C -0.213 4.213 8 C -0.069 4.069 9 C -0.139 4.139 10 C -0.015 4.015 11 N -0.312 5.312 12 C -0.022 4.022 13 H 0.049 0.951 14 C -0.182 4.182 15 C -0.139 4.139 16 C -0.009 4.009 17 C -0.582 4.582 18 H 0.075 0.925 19 C -0.195 4.195 20 N -0.570 5.570 21 Si 0.785 3.215 22 H -0.194 1.194 23 H -0.208 1.208 24 H -0.193 1.193 25 H 0.137 0.863 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.177 0.823 29 H 0.169 0.831 30 H 0.162 0.838 31 H 0.052 0.948 32 H 0.103 0.897 33 H 0.156 0.844 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.017 0.983 40 H 0.004 0.996 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.296 0.414 11.983 20.232 hybrid contribution 1.180 1.004 -0.819 1.753 sum -15.116 1.418 11.163 18.845 Atomic orbital electron populations 1.23383 0.76704 1.05660 1.02139 1.86203 1.23045 1.25481 1.87496 1.18533 0.91287 0.84393 0.93109 1.21272 1.02007 0.90608 1.13059 1.17513 0.89439 0.81591 1.00942 1.91483 1.77447 1.49277 1.93817 1.21189 0.91778 1.00708 1.07628 1.20976 1.00839 0.90263 0.94860 1.19373 0.91308 0.95771 1.07408 1.20656 0.96542 0.93013 0.91258 1.60689 1.56199 1.07293 1.07020 1.21540 0.93443 0.91115 0.96070 0.95139 1.21667 0.99258 0.95937 1.01321 1.21636 0.97889 0.98957 0.95393 1.18990 0.93228 0.93894 0.94779 1.21668 1.24539 1.10206 1.01777 0.92527 1.25901 0.96903 0.94856 1.01790 1.70071 1.33293 1.14659 1.38975 0.85577 0.78290 0.77924 0.79724 1.19374 1.20842 1.19294 0.86334 0.92124 0.91274 0.82325 0.83127 0.83755 0.94769 0.89654 0.84444 0.92002 0.92321 0.92642 0.92451 0.92939 0.98280 0.99588 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.31 -7.48 9.73 -92.32 -0.90 -8.38 16 3 C 0.17 4.49 6.66 22.50 0.15 4.64 16 4 C -0.25 -5.76 9.02 22.41 0.20 -5.55 16 5 C 0.12 3.06 7.30 22.36 0.16 3.22 16 6 F -0.14 -3.46 17.27 44.97 0.78 -2.68 16 7 C -0.19 -4.70 10.02 22.33 0.22 -4.48 16 8 C -0.05 -1.32 9.66 22.25 0.21 -1.11 16 9 C -0.14 -3.82 5.41 -19.76 -0.11 -3.92 16 10 C 0.11 3.34 5.27 85.56 0.45 3.79 16 11 N -0.68 -23.21 6.30 -495.56 -3.12 -26.33 16 12 C 0.09 3.03 2.65 44.92 0.12 3.15 16 13 H 0.03 1.09 7.80 -2.39 -0.02 1.07 16 14 C -0.12 -3.48 9.42 71.98 0.68 -2.80 16 15 C -0.10 -4.18 4.74 30.59 0.15 -4.04 16 16 C 0.03 1.47 4.80 29.85 0.14 1.62 16 17 C -0.54 -31.08 9.11 25.60 0.23 -30.85 16 18 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 19 C 0.00 0.20 5.46 84.66 0.46 0.66 16 20 N -0.93 -56.19 13.29 21.45 0.28 -55.90 16 21 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 25 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 0.85 7.65 -2.39 -0.02 0.83 16 27 H 0.07 0.80 7.67 -2.38 -0.02 0.78 16 28 H 0.16 2.83 6.30 -2.91 -0.02 2.81 16 29 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 30 H 0.14 3.54 8.04 -2.91 -0.02 3.52 16 31 H 0.03 1.01 7.92 -2.39 -0.02 0.99 16 32 H 0.09 2.36 7.14 -2.39 -0.02 2.35 16 33 H 0.34 13.19 6.46 -89.70 -0.58 12.61 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.49 7.45 -2.39 -0.02 1.47 16 36 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.05 2.20 8.14 -2.39 -0.02 2.19 16 39 H 0.00 -0.06 6.43 -2.39 -0.02 -0.07 16 40 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 41 H 0.26 14.99 8.31 -92.70 -0.77 14.21 16 Total: -1.00 -64.71 342.58 3.70 -61.01 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.44 Total: 20.15 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 4.19 Total: -34.34 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -2.84 Total: -82.23 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.90 Total: -8.38 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -64.71 3.70 -61.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489913.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.647 kcal (2) G-P(sol) polarization free energy of solvation -64.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds