Wall clock time and date at job start Tue Mar 31 2020 05:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47054 * 2 1 4 4 C 1.50696 * 109.47337 * 119.99981 * 2 1 3 5 5 C 1.38303 * 119.92014 * 120.00118 * 4 2 1 6 6 C 1.38083 * 120.08315 * 180.02562 * 5 4 2 7 7 C 1.38975 * 119.91887 * 0.02562 * 6 5 4 8 8 N 1.39589 * 120.08481 * 180.02562 * 7 6 5 9 9 C 1.38686 * 120.00139 * 187.46661 * 8 7 6 10 10 C 1.38810 * 120.29713 * 253.05736 * 9 8 7 11 11 C 1.38114 * 120.02211 * 180.25987 * 10 9 8 12 12 C 1.38929 * 120.63201 * 359.73798 * 11 10 9 13 13 C 1.36424 * 120.60607 * 359.97438 * 12 11 10 14 14 C 1.40735 * 119.95330 * 0.02562 * 13 12 11 15 15 C 1.41018 * 120.30881 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99646 * 154.64286 * 15 14 13 17 17 C 1.39908 * 120.00226 * 334.65261 * 15 14 13 18 18 N 1.30888 * 119.99779 * 334.26580 * 17 15 14 19 19 Si 1.86797 * 120.00215 * 154.27324 * 17 15 14 20 20 H 1.48500 * 109.47252 * 179.97438 * 19 17 15 21 21 H 1.48504 * 109.47055 * 299.99655 * 19 17 15 22 22 H 1.48501 * 109.47213 * 59.99243 * 19 17 15 23 23 C 1.38975 * 119.83917 * 0.27053 * 7 6 5 24 24 C 1.38084 * 119.91917 * 359.45334 * 23 7 6 25 25 H 1.09001 * 109.46884 * 300.00058 * 1 2 3 26 26 H 1.09001 * 109.47414 * 60.00126 * 1 2 3 27 27 H 1.08998 * 109.47281 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46884 * 239.99941 * 2 1 3 29 29 H 1.09000 * 109.47344 * 299.99879 * 3 2 1 30 30 H 1.08991 * 109.47324 * 60.00190 * 3 2 1 31 31 H 1.09004 * 109.46919 * 180.02562 * 3 2 1 32 32 H 1.07998 * 119.96167 * 359.97438 * 5 4 2 33 33 H 1.07999 * 120.04763 * 179.97438 * 6 5 4 34 34 H 0.97001 * 119.99447 * 7.46334 * 8 7 6 35 35 H 1.08003 * 119.99102 * 359.97438 * 10 9 8 36 36 H 1.08001 * 119.68195 * 179.76379 * 11 10 9 37 37 H 1.08004 * 119.69413 * 180.02562 * 12 11 10 38 38 H 1.08007 * 120.02005 * 180.02562 * 13 12 11 39 39 H 0.97000 * 119.99851 * 354.78201 * 18 17 15 40 40 H 1.08000 * 120.04250 * 179.70835 * 23 7 6 41 41 H 1.08000 * 119.96494 * 180.29489 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8274 -1.8347 1.1016 6 6 3.2892 -2.4885 2.2267 7 6 2.9536 -2.0158 3.4898 8 7 3.4189 -2.6738 4.6296 9 6 2.9604 -2.2976 5.8832 10 6 3.7873 -1.5961 6.7498 11 6 3.3267 -1.2290 7.9991 12 6 2.0359 -1.5501 8.4001 13 6 1.1995 -2.2337 7.5669 14 6 1.6430 -2.6202 6.2883 15 6 0.7849 -3.3275 5.4212 16 1 0.9324 -3.2730 4.3527 17 6 -0.2576 -4.0997 5.9449 18 7 -0.1675 -4.5847 7.1573 19 14 -1.7781 -4.4386 4.9140 20 1 -2.7274 -5.2745 5.6920 21 1 -2.4292 -3.1531 4.5549 22 1 -1.3861 -5.1578 3.6754 23 6 2.1494 -0.8894 3.6154 24 6 1.6960 -0.2373 2.4858 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 3.0868 -2.2022 0.1197 33 1 3.9096 -3.3667 2.1255 34 1 4.0629 -3.3942 4.5447 35 1 4.7929 -1.3414 6.4489 36 1 3.9761 -0.6867 8.6704 37 1 1.6912 -1.2552 9.3802 38 1 0.1977 -2.4781 7.8882 39 1 0.6518 -4.4735 7.6645 40 1 1.8827 -0.5220 4.5954 41 1 1.0750 0.6409 2.5826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173895239.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:11 Heat of formation + Delta-G solvation = 23.996235 kcal Electronic energy + Delta-G solvation = -21525.313683 eV Core-core repulsion = 18561.421859 eV Total energy + Delta-G solvation = -2963.891824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.35725 -37.97151 -35.71481 -34.00019 -33.36651 -30.30855 -29.36946 -29.15974 -27.04668 -26.97574 -24.97051 -22.64655 -22.17450 -21.02332 -20.21641 -19.54090 -17.94852 -16.87359 -16.11555 -15.15753 -14.81513 -14.45598 -14.37835 -13.96937 -13.73578 -13.37837 -13.26974 -12.87205 -12.62468 -12.39345 -12.23524 -12.21697 -12.05851 -11.93178 -11.30450 -11.05993 -10.93966 -10.92192 -10.70954 -10.43480 -10.38656 -10.24532 -10.05427 -9.72865 -9.25642 -8.94401 -8.30215 -7.75202 -7.66731 -7.23541 -6.55046 -4.47881 2.06712 2.19871 2.66313 2.74462 3.14096 3.24706 3.34331 3.97316 4.38640 4.49164 4.52146 5.01749 5.09551 5.36846 5.41884 5.54717 5.57860 5.71333 5.74595 5.94985 5.97600 5.98631 6.04316 6.14636 6.17959 6.24000 6.33527 6.40964 6.47728 6.52075 6.63177 6.84674 6.97993 7.03949 7.08633 7.24796 7.27863 7.42971 7.60015 7.68713 7.74956 7.86946 8.06896 8.13635 8.43599 8.49633 8.78541 8.92698 9.96920 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.006318 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.645787 B = 4430.503014 C = 5607.628527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 C -0.142 4.142 4 C -0.155 4.155 5 C -0.075 4.075 6 C -0.209 4.209 7 C 0.236 3.764 8 N -0.664 5.664 9 C -0.002 4.002 10 C -0.076 4.076 11 C -0.255 4.255 12 C -0.082 4.082 13 C -0.213 4.213 14 C 0.099 3.901 15 C -0.497 4.497 16 H 0.082 0.918 17 C 0.039 3.961 18 N -0.791 5.791 19 Si 1.059 2.941 20 H -0.274 1.274 21 H -0.273 1.273 22 H -0.275 1.275 23 C -0.170 4.170 24 C -0.071 4.071 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.390 0.610 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.299 0.701 40 H 0.121 0.879 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.271 5.250 -9.652 11.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.062 4.062 3 C -0.199 4.199 4 C -0.157 4.157 5 C -0.094 4.094 6 C -0.233 4.233 7 C 0.131 3.869 8 N -0.284 5.284 9 C -0.095 4.095 10 C -0.096 4.096 11 C -0.275 4.275 12 C -0.101 4.101 13 C -0.233 4.233 14 C 0.095 3.905 15 C -0.524 4.524 16 H 0.100 0.900 17 C -0.183 4.183 18 N -0.414 5.414 19 Si 0.883 3.117 20 H -0.199 1.199 21 H -0.198 1.198 22 H -0.200 1.200 23 C -0.193 4.193 24 C -0.089 4.089 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.224 0.776 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.139 0.861 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.708 4.538 -9.383 10.447 hybrid contribution 1.798 0.375 0.161 1.844 sum 2.507 4.914 -9.222 10.746 Atomic orbital electron populations 1.21865 0.95144 1.01857 1.01225 1.19899 0.95303 0.95387 0.95620 1.21851 1.00963 0.95881 1.01225 1.19369 1.03722 0.98660 0.93997 1.20550 0.96929 0.94835 0.97097 1.20453 1.08470 1.03107 0.91220 1.17950 0.91872 0.90530 0.86556 1.41201 1.47346 1.37728 1.02127 1.17275 0.93901 1.11277 0.87059 1.20791 0.97731 0.96608 0.94516 1.20143 0.97298 1.12433 0.97611 1.20395 0.94161 0.97866 0.97651 1.20853 0.99462 1.06377 0.96611 1.17812 0.90605 0.90416 0.91717 1.20502 1.10730 1.24765 0.96397 0.90007 1.27023 1.02296 0.92407 0.96615 1.70495 1.30775 1.30158 1.09953 0.83710 0.74650 0.77841 0.75527 1.19854 1.19787 1.20032 1.20702 1.02645 0.96952 0.98956 1.20604 0.98148 0.98611 0.91574 0.92554 0.93224 0.92625 0.91448 0.93217 0.92630 0.92852 0.87298 0.87138 0.77550 0.89179 0.89215 0.89266 0.87607 0.88693 0.86081 0.87201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.00 37.16 0.33 -1.40 16 2 C -0.04 -0.55 3.09 -91.78 -0.28 -0.84 16 3 C -0.14 -1.61 9.01 37.16 0.33 -1.27 16 4 C -0.16 -2.44 4.79 -104.57 -0.50 -2.94 16 5 C -0.08 -1.20 9.66 -39.61 -0.38 -1.58 16 6 C -0.21 -3.66 9.90 -39.37 -0.39 -4.05 16 7 C 0.24 4.67 5.22 -83.78 -0.44 4.24 16 8 N -0.66 -13.63 4.91 -8.04 -0.04 -13.67 16 9 C 0.00 -0.03 4.64 -83.28 -0.39 -0.42 16 10 C -0.08 -1.66 9.96 -39.42 -0.39 -2.06 16 11 C -0.25 -5.49 10.03 -39.37 -0.40 -5.89 16 12 C -0.08 -1.84 9.96 -39.98 -0.40 -2.24 16 13 C -0.21 -5.25 7.89 -39.29 -0.31 -5.56 16 14 C 0.10 2.48 4.76 -106.64 -0.51 1.98 16 15 C -0.50 -12.70 8.27 -37.90 -0.31 -13.01 16 16 H 0.08 2.14 6.32 -52.49 -0.33 1.81 16 17 C 0.04 0.98 4.93 -17.33 -0.09 0.89 16 18 N -0.79 -20.50 12.34 55.55 0.69 -19.82 16 19 Si 1.06 21.80 30.00 -169.99 -5.10 16.70 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 C -0.17 -3.44 8.68 -39.37 -0.34 -3.78 16 24 C -0.07 -1.23 8.70 -39.61 -0.34 -1.57 16 25 H 0.06 0.70 7.38 -51.93 -0.38 0.32 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.79 7.87 -51.93 -0.41 0.38 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.65 7.38 -51.93 -0.38 0.26 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.11 1.45 7.94 -52.49 -0.42 1.04 16 33 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 34 H 0.39 7.22 8.84 -40.82 -0.36 6.86 16 35 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 36 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 38 H 0.11 2.70 6.49 -52.48 -0.34 2.36 16 39 H 0.30 7.94 6.67 -40.82 -0.27 7.67 16 40 H 0.12 2.71 6.75 -52.49 -0.35 2.36 16 41 H 0.11 1.73 7.09 -52.49 -0.37 1.36 16 LS Contribution 334.60 15.07 5.04 5.04 Total: -1.00 -26.20 334.60 -10.01 -36.21 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -5.80 Total: 15.04 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: -4.80 Total: -39.51 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 0.65 Total: -33.48 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.10 Total: 16.70 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.20 -10.01 -36.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173895239.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.210 kcal (2) G-P(sol) polarization free energy of solvation -26.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds