Wall clock time and date at job start Tue Mar 31 2020 05:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47054 * 2 1 4 4 C 1.50696 * 109.47337 * 119.99981 * 2 1 3 5 5 C 1.38303 * 119.92014 * 120.00118 * 4 2 1 6 6 C 1.38083 * 120.08315 * 180.02562 * 5 4 2 7 7 C 1.38975 * 119.91887 * 0.02562 * 6 5 4 8 8 N 1.39589 * 120.08481 * 180.02562 * 7 6 5 9 9 C 1.38686 * 120.00139 * 187.46661 * 8 7 6 10 10 C 1.38810 * 120.29713 * 253.05736 * 9 8 7 11 11 C 1.38114 * 120.02211 * 180.25987 * 10 9 8 12 12 C 1.38929 * 120.63201 * 359.73798 * 11 10 9 13 13 C 1.36424 * 120.60607 * 359.97438 * 12 11 10 14 14 C 1.40735 * 119.95330 * 0.02562 * 13 12 11 15 15 C 1.41018 * 120.30881 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99646 * 154.64286 * 15 14 13 17 17 C 1.39908 * 120.00226 * 334.65261 * 15 14 13 18 18 N 1.30888 * 119.99779 * 334.26580 * 17 15 14 19 19 Si 1.86797 * 120.00215 * 154.27324 * 17 15 14 20 20 H 1.48500 * 109.47252 * 179.97438 * 19 17 15 21 21 H 1.48504 * 109.47055 * 299.99655 * 19 17 15 22 22 H 1.48501 * 109.47213 * 59.99243 * 19 17 15 23 23 C 1.38975 * 119.83917 * 0.27053 * 7 6 5 24 24 C 1.38084 * 119.91917 * 359.45334 * 23 7 6 25 25 H 1.09001 * 109.46884 * 300.00058 * 1 2 3 26 26 H 1.09001 * 109.47414 * 60.00126 * 1 2 3 27 27 H 1.08998 * 109.47281 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46884 * 239.99941 * 2 1 3 29 29 H 1.09000 * 109.47344 * 299.99879 * 3 2 1 30 30 H 1.08991 * 109.47324 * 60.00190 * 3 2 1 31 31 H 1.09004 * 109.46919 * 180.02562 * 3 2 1 32 32 H 1.07998 * 119.96167 * 359.97438 * 5 4 2 33 33 H 1.07999 * 120.04763 * 179.97438 * 6 5 4 34 34 H 0.97001 * 119.99447 * 7.46334 * 8 7 6 35 35 H 1.08003 * 119.99102 * 359.97438 * 10 9 8 36 36 H 1.08001 * 119.68195 * 179.76379 * 11 10 9 37 37 H 1.08004 * 119.69413 * 180.02562 * 12 11 10 38 38 H 1.08007 * 120.02005 * 180.02562 * 13 12 11 39 39 H 0.97000 * 119.99851 * 354.78201 * 18 17 15 40 40 H 1.08000 * 120.04250 * 179.70835 * 23 7 6 41 41 H 1.08000 * 119.96494 * 180.29489 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8274 -1.8347 1.1016 6 6 3.2892 -2.4885 2.2267 7 6 2.9536 -2.0158 3.4898 8 7 3.4189 -2.6738 4.6296 9 6 2.9604 -2.2976 5.8832 10 6 3.7873 -1.5961 6.7498 11 6 3.3267 -1.2290 7.9991 12 6 2.0359 -1.5501 8.4001 13 6 1.1995 -2.2337 7.5669 14 6 1.6430 -2.6202 6.2883 15 6 0.7849 -3.3275 5.4212 16 1 0.9324 -3.2730 4.3527 17 6 -0.2576 -4.0997 5.9449 18 7 -0.1675 -4.5847 7.1573 19 14 -1.7781 -4.4386 4.9140 20 1 -2.7274 -5.2745 5.6920 21 1 -2.4292 -3.1531 4.5549 22 1 -1.3861 -5.1578 3.6754 23 6 2.1494 -0.8894 3.6154 24 6 1.6960 -0.2373 2.4858 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 3.0868 -2.2022 0.1197 33 1 3.9096 -3.3667 2.1255 34 1 4.0629 -3.3942 4.5447 35 1 4.7929 -1.3414 6.4489 36 1 3.9761 -0.6867 8.6704 37 1 1.6912 -1.2552 9.3802 38 1 0.1977 -2.4781 7.8882 39 1 0.6518 -4.4735 7.6645 40 1 1.8827 -0.5220 4.5954 41 1 1.0750 0.6409 2.5826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173895239.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:11 Heat of formation + Delta-G solvation = 13.785214 kcal Electronic energy + Delta-G solvation = -21525.756466 eV Core-core repulsion = 18561.421859 eV Total energy + Delta-G solvation = -2964.334607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.84704 -39.57409 -37.09302 -35.81576 -34.75022 -31.71580 -31.19885 -30.73734 -28.57722 -27.88396 -26.79004 -23.97142 -23.64905 -22.84659 -21.81469 -20.76255 -19.78740 -18.33297 -17.76851 -16.56119 -16.40245 -16.21436 -15.74102 -15.55402 -15.13284 -14.67677 -14.39707 -14.34554 -14.19622 -14.03249 -13.88592 -13.47192 -13.46248 -13.03949 -12.95040 -12.68236 -12.46962 -12.13217 -12.04851 -11.97975 -11.80393 -11.52091 -11.45922 -11.35189 -10.97141 -10.62481 -9.70073 -9.56214 -9.50783 -9.12790 -8.06669 -6.39763 0.66500 0.72580 0.90727 0.96814 1.44799 1.58779 1.73123 2.27221 2.65234 2.86047 3.10863 3.51724 3.95443 4.02354 4.26022 4.30357 4.33456 4.40941 4.45747 4.60662 4.70395 4.71764 4.81141 4.88401 4.95591 5.01353 5.07192 5.08354 5.18958 5.22843 5.26817 5.41173 5.44520 5.48572 5.56140 5.68862 5.70325 5.80615 5.89295 5.95539 6.00084 6.18832 6.20880 6.35887 6.66076 6.85287 6.98817 7.21958 8.02620 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.006318 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.645787 B = 4430.503014 C = 5607.628527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 C -0.140 4.140 4 C -0.146 4.146 5 C -0.075 4.075 6 C -0.210 4.210 7 C 0.212 3.788 8 N -0.671 5.671 9 C 0.006 3.994 10 C -0.087 4.087 11 C -0.244 4.244 12 C -0.089 4.089 13 C -0.234 4.234 14 C 0.076 3.924 15 C -0.521 4.521 16 H 0.069 0.931 17 C 0.005 3.995 18 N -0.814 5.814 19 Si 1.103 2.897 20 H -0.269 1.269 21 H -0.267 1.267 22 H -0.262 1.262 23 C -0.194 4.194 24 C -0.076 4.076 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.143 0.857 33 H 0.128 0.872 34 H 0.397 0.603 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.285 0.715 40 H 0.087 0.913 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.939 6.109 -11.986 13.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.061 4.061 3 C -0.197 4.197 4 C -0.148 4.148 5 C -0.093 4.093 6 C -0.233 4.233 7 C 0.109 3.891 8 N -0.293 5.293 9 C -0.088 4.088 10 C -0.107 4.107 11 C -0.264 4.264 12 C -0.107 4.107 13 C -0.254 4.254 14 C 0.072 3.928 15 C -0.549 4.549 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.438 5.438 19 Si 0.921 3.079 20 H -0.193 1.193 21 H -0.192 1.192 22 H -0.187 1.187 23 C -0.217 4.217 24 C -0.095 4.095 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.161 0.839 33 H 0.146 0.854 34 H 0.233 0.767 35 H 0.131 0.869 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.394 5.411 -11.733 12.996 hybrid contribution 1.739 0.254 0.841 1.949 sum 3.133 5.665 -10.892 12.671 Atomic orbital electron populations 1.21864 0.94708 1.01526 1.01983 1.19992 0.95614 0.96023 0.94502 1.21829 1.00885 0.95015 1.01978 1.19792 1.02263 0.98280 0.94510 1.20989 0.95932 0.94332 0.98090 1.20746 1.08283 1.03595 0.90647 1.18124 0.92871 0.90938 0.87167 1.41134 1.47962 1.38547 1.01668 1.17465 0.93284 1.09939 0.88092 1.21117 0.98735 0.96275 0.94585 1.20561 0.97079 1.10939 0.97799 1.20681 0.94397 0.97220 0.98405 1.20843 0.99292 1.07898 0.97403 1.18117 0.91773 0.90838 0.92088 1.20472 1.12355 1.26356 0.95752 0.91249 1.28181 1.04426 0.91608 0.96930 1.70596 1.30162 1.32104 1.10890 0.83168 0.71930 0.78078 0.74684 1.19321 1.19158 1.18689 1.20590 1.04439 0.98292 0.98368 1.20767 0.98168 0.98870 0.91684 0.93538 0.90810 0.93509 0.89555 0.90991 0.93432 0.92968 0.83889 0.85370 0.76696 0.86918 0.86060 0.86877 0.89497 0.90322 0.89454 0.86212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.00 71.98 0.65 -2.44 16 2 C -0.04 -0.95 3.09 -11.54 -0.04 -0.98 16 3 C -0.14 -2.74 9.01 71.98 0.65 -2.09 16 4 C -0.15 -4.30 4.79 -19.83 -0.09 -4.40 16 5 C -0.08 -2.18 9.66 22.25 0.21 -1.97 16 6 C -0.21 -7.04 9.90 22.41 0.22 -6.82 16 7 C 0.21 8.47 5.22 38.26 0.20 8.67 16 8 N -0.67 -27.94 4.91 -179.36 -0.88 -28.82 16 9 C 0.01 0.30 4.64 39.01 0.18 0.48 16 10 C -0.09 -3.74 9.96 22.38 0.22 -3.52 16 11 C -0.24 -10.20 10.03 22.41 0.22 -9.98 16 12 C -0.09 -3.97 9.96 22.01 0.22 -3.75 16 13 C -0.23 -12.00 7.89 22.46 0.18 -11.82 16 14 C 0.08 3.97 4.76 -21.17 -0.10 3.87 16 15 C -0.52 -27.81 8.27 23.36 0.19 -27.62 16 16 H 0.07 3.78 6.32 -2.91 -0.02 3.76 16 17 C 0.01 0.28 4.93 85.24 0.42 0.70 16 18 N -0.81 -44.01 12.34 21.82 0.27 -43.74 16 19 Si 1.10 44.87 30.00 68.60 2.06 46.93 16 20 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 21 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 23 C -0.19 -8.05 8.68 22.41 0.19 -7.86 16 24 C -0.08 -2.64 8.70 22.25 0.19 -2.44 16 25 H 0.05 1.08 7.38 -2.39 -0.02 1.06 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.09 1.63 7.87 -2.39 -0.02 1.61 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.00 7.38 -2.39 -0.02 0.98 16 31 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.14 3.19 7.94 -2.91 -0.02 3.16 16 33 H 0.13 3.76 8.06 -2.91 -0.02 3.73 16 34 H 0.40 14.84 8.84 -92.71 -0.82 14.02 16 35 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 36 H 0.12 4.29 8.06 -2.91 -0.02 4.26 16 37 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 38 H 0.09 4.70 6.49 -2.91 -0.02 4.68 16 39 H 0.28 15.93 6.67 -92.71 -0.62 15.31 16 40 H 0.09 4.14 6.75 -2.91 -0.02 4.12 16 41 H 0.12 3.77 7.09 -2.91 -0.02 3.75 16 Total: -1.00 -58.60 334.60 5.53 -53.06 By element: Atomic # 1 Polarization: 44.18 SS G_CDS: 0.36 Total: 44.54 kcal Atomic # 6 Polarization: -75.70 SS G_CDS: 3.73 Total: -71.97 kcal Atomic # 7 Polarization: -71.95 SS G_CDS: -0.61 Total: -72.56 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.06 Total: 46.93 kcal Total: -58.60 5.53 -53.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173895239.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.849 kcal (2) G-P(sol) polarization free energy of solvation -58.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds