Wall clock time and date at job start Tue Mar 31 2020 05:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46773 * 2 1 4 4 C 1.50698 * 109.47473 * 120.00067 * 2 1 3 5 5 C 1.38285 * 119.92204 * 120.00141 * 4 2 1 6 6 C 1.38098 * 120.07343 * 180.02562 * 5 4 2 7 7 C 1.38929 * 119.92658 * 359.97438 * 6 5 4 8 8 N 1.39710 * 120.08023 * 180.02562 * 7 6 5 9 9 C 1.39722 * 120.00312 * 154.57506 * 8 7 6 10 10 C 1.39349 * 119.94991 * 328.43480 * 9 8 7 11 11 C 1.38479 * 120.42122 * 179.97438 * 10 9 8 12 12 C 1.37698 * 120.32472 * 0.02562 * 11 10 9 13 13 C 1.40758 * 119.89496 * 359.97438 * 12 11 10 14 14 C 1.41403 * 120.20325 * 179.97438 * 13 12 11 15 15 H 1.08007 * 120.00432 * 27.31349 * 14 13 12 16 16 C 1.39926 * 119.99818 * 207.31492 * 14 13 12 17 17 N 1.30827 * 120.00155 * 11.93057 * 16 14 13 18 18 Si 1.86804 * 120.00128 * 191.93143 * 16 14 13 19 19 H 1.48503 * 109.46794 * 59.99846 * 18 16 14 20 20 H 1.48494 * 109.47092 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47163 * 300.00112 * 18 16 14 22 22 C 1.38293 * 119.95083 * 148.14938 * 9 8 7 23 23 C 1.38926 * 119.84294 * 0.26960 * 7 6 5 24 24 C 1.38101 * 119.92509 * 359.49961 * 23 7 6 25 25 H 1.08997 * 109.47137 * 299.99864 * 1 2 3 26 26 H 1.08997 * 109.47258 * 59.99818 * 1 2 3 27 27 H 1.09000 * 109.46700 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47002 * 240.00485 * 2 1 3 29 29 H 1.08997 * 109.47178 * 60.00161 * 3 2 1 30 30 H 1.08993 * 109.47050 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46838 * 300.00126 * 3 2 1 32 32 H 1.07997 * 119.96682 * 0.02562 * 5 4 2 33 33 H 1.07999 * 120.04016 * 179.97438 * 6 5 4 34 34 H 0.96999 * 119.99871 * 334.30998 * 8 7 6 35 35 H 1.07998 * 119.79295 * 359.96712 * 10 9 8 36 36 H 1.07995 * 119.83656 * 180.02562 * 11 10 9 37 37 H 1.07997 * 120.04657 * 179.97438 * 12 11 10 38 38 H 0.97001 * 120.00102 * 179.97438 * 17 16 14 39 39 H 1.07993 * 120.16648 * 0.02562 * 22 9 8 40 40 H 1.08002 * 120.03710 * 179.72566 * 23 7 6 41 41 H 1.08005 * 119.95813 * 180.25076 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0325 -0.7104 1.2304 5 6 2.8274 -1.8345 1.1016 6 6 3.2891 -2.4883 2.2270 7 6 2.9545 -2.0151 3.4897 8 7 3.4203 -2.6736 4.6304 9 6 3.5622 -1.9745 5.8318 10 6 3.8911 -0.6205 5.8141 11 6 4.0336 0.0820 6.9989 12 6 3.8522 -0.5507 8.2084 13 6 3.5196 -1.9180 8.2420 14 6 3.3324 -2.5743 9.4804 15 1 3.0070 -2.0143 10.3447 16 6 3.5687 -3.9494 9.5862 17 7 4.1800 -4.5844 8.6194 18 14 3.0112 -4.8786 11.1078 19 1 1.5382 -4.7556 11.2509 20 1 3.3772 -6.3116 10.9745 21 1 3.6745 -4.3074 12.3074 22 6 3.3702 -2.6259 7.0365 23 6 2.1515 -0.8884 3.6153 24 6 1.6972 -0.2367 2.4856 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.6767 1.9564 0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 3.0876 -2.2017 0.1198 33 1 3.9096 -3.3664 2.1258 34 1 3.6415 -3.6172 4.5893 35 1 4.0359 -0.1158 4.8704 36 1 4.2883 1.1312 6.9742 37 1 3.9649 0.0014 9.1297 38 1 4.3442 -5.5376 8.6929 39 1 3.1111 -3.6742 7.0514 40 1 1.8858 -0.5204 4.5953 41 1 1.0762 0.6416 2.5827 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173896244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:14 Heat of formation + Delta-G solvation = 27.111833 kcal Electronic energy + Delta-G solvation = -20770.420692 eV Core-core repulsion = 17806.663970 eV Total energy + Delta-G solvation = -2963.756722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.59955 -37.85232 -35.91290 -33.98271 -33.14833 -30.64053 -29.52266 -29.26190 -27.14735 -26.88577 -25.31428 -22.94226 -22.29457 -20.95595 -20.18327 -19.73119 -17.53581 -16.83622 -15.86442 -15.48367 -15.05831 -14.68762 -14.44950 -13.97788 -13.70871 -13.49233 -13.27077 -13.06552 -12.86096 -12.42896 -12.38421 -12.36557 -12.11901 -11.65722 -11.31489 -11.16899 -11.12524 -11.08184 -10.77676 -10.67955 -10.52786 -10.45482 -9.92975 -9.71548 -9.50628 -9.20194 -8.56434 -7.88280 -7.39648 -6.79997 -6.32853 -4.42091 1.76936 1.80186 2.79095 3.03511 3.05512 3.08269 3.21304 3.92090 4.08916 4.18433 4.64648 4.80964 4.89505 5.23052 5.30872 5.33366 5.50720 5.58746 5.64602 5.73220 5.75962 5.81118 5.96610 5.99917 6.06265 6.22766 6.23192 6.29704 6.35883 6.49875 6.70767 6.77475 6.79553 6.98982 7.03051 7.04117 7.22173 7.29730 7.37151 7.74098 7.83192 7.95232 8.05518 8.35490 8.45415 8.67653 8.88206 8.94164 10.19710 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030277 B = 0.003515 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.581782 B = 7964.206064 C = 8341.859365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.047 4.047 3 C -0.143 4.143 4 C -0.138 4.138 5 C -0.083 4.083 6 C -0.189 4.189 7 C 0.208 3.792 8 N -0.685 5.685 9 C 0.171 3.829 10 C -0.265 4.265 11 C -0.077 4.077 12 C -0.238 4.238 13 C 0.128 3.872 14 C -0.462 4.462 15 H 0.077 0.923 16 C 0.075 3.925 17 N -0.801 5.801 18 Si 0.910 3.090 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.192 4.192 23 C -0.165 4.165 24 C -0.079 4.079 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.402 0.598 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.279 0.721 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.088 4.057 -13.112 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.066 4.066 3 C -0.201 4.201 4 C -0.139 4.139 5 C -0.101 4.101 6 C -0.211 4.211 7 C 0.107 3.893 8 N -0.306 5.306 9 C 0.077 3.923 10 C -0.286 4.286 11 C -0.096 4.096 12 C -0.258 4.258 13 C 0.125 3.875 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.427 5.427 18 Si 0.735 3.265 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.190 1.190 22 C -0.215 4.215 23 C -0.187 4.187 24 C -0.098 4.098 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.237 0.763 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.141 0.859 40 H 0.149 0.851 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.992 3.910 -13.077 14.221 hybrid contribution 0.065 -0.954 0.726 1.201 sum -3.927 2.956 -12.351 13.293 Atomic orbital electron populations 1.21858 0.94970 1.01770 1.01451 1.19962 0.95418 0.95656 0.95520 1.21861 1.01185 0.95581 1.01447 1.19518 1.02416 0.97757 0.94236 1.20653 0.97141 0.94942 0.97401 1.20682 1.05576 1.03602 0.91219 1.17860 0.91859 0.93077 0.86538 1.42256 1.69967 1.11610 1.06736 1.17614 0.98575 0.91695 0.84398 1.20211 1.17596 0.93958 0.96883 1.20359 0.99347 0.97212 0.92672 1.21010 1.12709 0.96373 0.95691 1.17383 0.86868 0.90635 0.92647 1.19538 1.40624 0.92773 0.96317 0.90465 1.25885 0.92586 0.97998 0.97740 1.69790 1.29964 1.10643 1.32319 0.86335 0.80223 0.78214 0.81729 1.18899 1.20399 1.19029 1.21109 1.09446 1.01187 0.89716 1.21079 0.99924 0.98136 0.99539 1.20686 0.98803 0.98825 0.91471 0.92528 0.92975 0.92702 0.91182 0.92510 0.92667 0.92986 0.86835 0.86608 0.76317 0.88856 0.89167 0.88960 0.91004 0.85901 0.85127 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.01 37.16 0.33 -1.05 16 2 C -0.05 -0.50 3.09 -91.77 -0.28 -0.78 16 3 C -0.14 -1.40 9.01 37.16 0.33 -1.07 16 4 C -0.14 -1.84 4.79 -104.59 -0.50 -2.34 16 5 C -0.08 -1.13 9.66 -39.62 -0.38 -1.51 16 6 C -0.19 -2.89 9.94 -39.38 -0.39 -3.28 16 7 C 0.21 3.70 6.04 -83.76 -0.51 3.20 16 8 N -0.68 -13.42 5.46 -8.45 -0.05 -13.47 16 9 C 0.17 3.93 5.91 -83.83 -0.50 3.43 16 10 C -0.26 -5.92 7.75 -39.08 -0.30 -6.23 16 11 C -0.08 -1.73 10.02 -39.69 -0.40 -2.12 16 12 C -0.24 -5.80 9.79 -38.83 -0.38 -6.18 16 13 C 0.13 3.37 5.56 -106.85 -0.59 2.77 16 14 C -0.46 -12.16 9.06 -37.75 -0.34 -12.50 16 15 H 0.08 1.95 7.87 -52.48 -0.41 1.53 16 16 C 0.07 1.86 5.24 -17.35 -0.09 1.76 16 17 N -0.80 -20.41 10.82 55.55 0.60 -19.81 16 18 Si 0.91 18.61 29.58 -169.99 -5.03 13.58 16 19 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 C -0.19 -4.89 8.57 -38.67 -0.33 -5.22 16 23 C -0.17 -2.87 7.85 -39.38 -0.31 -3.18 16 24 C -0.08 -1.16 8.70 -39.61 -0.34 -1.51 16 25 H 0.06 0.56 7.38 -51.93 -0.38 0.17 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.68 7.87 -51.93 -0.41 0.27 16 29 H 0.06 0.57 7.38 -51.93 -0.38 0.18 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.11 1.27 7.94 -52.49 -0.42 0.85 16 33 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 34 H 0.40 7.30 8.89 -40.82 -0.36 6.94 16 35 H 0.09 1.98 6.55 -52.49 -0.34 1.64 16 36 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 38 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 39 H 0.12 3.23 6.17 -52.49 -0.32 2.91 16 40 H 0.13 2.49 6.33 -52.49 -0.33 2.16 16 41 H 0.11 1.48 7.09 -52.48 -0.37 1.11 16 LS Contribution 335.68 15.07 5.06 5.06 Total: -1.00 -26.87 335.68 -10.23 -37.10 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -5.83 Total: 13.34 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: -4.98 Total: -35.80 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.55 Total: -33.28 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -26.87 -10.23 -37.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173896244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.216 kcal (2) G-P(sol) polarization free energy of solvation -26.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds