Wall clock time and date at job start Tue Mar 31 2020 05:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52986 * 109.47172 * 2 1 4 4 C 1.50710 * 109.46745 * 120.00055 * 2 1 3 5 5 C 1.38098 * 120.03980 * 297.27956 * 4 2 1 6 6 C 1.38277 * 120.08286 * 180.02562 * 5 4 2 7 7 C 1.38329 * 120.15450 * 0.02562 * 6 5 4 8 8 C 1.38057 * 120.08362 * 359.97438 * 7 6 5 9 9 C 1.38950 * 120.03646 * 117.30531 * 4 2 1 10 10 N 1.39581 * 120.08360 * 359.95181 * 9 4 2 11 11 C 1.38687 * 120.00139 * 78.43457 * 10 9 4 12 12 C 1.38810 * 120.29615 * 359.97438 * 11 10 9 13 13 C 1.38119 * 120.01875 * 179.97438 * 12 11 10 14 14 C 1.38929 * 120.63834 * 359.97438 * 13 12 11 15 15 C 1.36423 * 120.60134 * 0.02562 * 14 13 12 16 16 C 1.40741 * 119.95655 * 359.70467 * 15 14 13 17 17 C 1.41010 * 120.30979 * 180.27611 * 16 15 14 18 18 H 1.08004 * 119.99637 * 206.38248 * 17 16 15 19 19 C 1.39914 * 120.00481 * 26.37472 * 17 16 15 20 20 N 1.30880 * 119.99404 * 15.92817 * 19 17 16 21 21 Si 1.86795 * 120.00179 * 195.92605 * 19 17 16 22 22 H 1.48504 * 109.47193 * 60.00201 * 21 19 17 23 23 H 1.48500 * 109.47330 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47295 * 300.00105 * 21 19 17 25 25 H 1.08996 * 109.46698 * 300.00255 * 1 2 3 26 26 H 1.08996 * 109.46437 * 60.00191 * 1 2 3 27 27 H 1.08998 * 109.46877 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46920 * 239.99271 * 2 1 3 29 29 H 1.08999 * 109.47793 * 59.99806 * 3 2 1 30 30 H 1.09001 * 109.47483 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47471 * 299.99570 * 3 2 1 32 32 H 1.08008 * 119.95957 * 359.97438 * 5 4 2 33 33 H 1.07998 * 119.92651 * 180.02562 * 6 5 4 34 34 H 1.08009 * 119.95230 * 179.97438 * 7 6 5 35 35 H 1.08007 * 120.03838 * 180.27411 * 8 7 6 36 36 H 0.97002 * 119.99811 * 258.43033 * 10 9 4 37 37 H 1.07998 * 119.98980 * 0.02562 * 12 11 10 38 38 H 1.08001 * 119.67783 * 179.97438 * 13 12 11 39 39 H 1.07996 * 119.69836 * 180.02562 * 14 13 12 40 40 H 1.08003 * 120.02270 * 179.97438 * 15 14 13 41 41 H 0.97004 * 119.99988 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2306 5 6 1.7462 -0.2075 2.4845 6 6 2.2070 -0.8584 3.6141 7 6 2.9564 -2.0147 3.4927 8 6 3.2464 -2.5234 2.2424 9 6 2.7844 -1.8721 1.1048 10 7 3.0753 -2.3836 -0.1610 11 6 4.0839 -1.8145 -0.9239 12 6 4.8078 -0.7357 -0.4351 13 6 5.8114 -0.1736 -1.1996 14 6 6.1083 -0.6778 -2.4597 15 6 5.4132 -1.7373 -2.9652 16 6 4.3891 -2.3329 -2.2054 17 6 3.6698 -3.4320 -2.7183 18 1 2.6613 -3.6218 -2.3816 19 6 4.2624 -4.2765 -3.6634 20 7 5.5585 -4.2494 -3.8435 21 14 3.2039 -5.4426 -4.6679 22 1 2.2160 -4.6612 -5.4545 23 1 4.0663 -6.2232 -5.5910 24 1 2.4879 -6.3709 -3.7563 25 1 -0.3632 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6768 1.9563 0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.1623 0.6958 2.5829 33 1 1.9813 -0.4631 4.5934 34 1 3.3151 -2.5202 4.3772 35 1 3.8279 -3.4287 2.1486 36 1 2.5719 -3.1372 -0.5069 37 1 4.5866 -0.3361 0.5436 38 1 6.3709 0.6659 -0.8141 39 1 6.8964 -0.2270 -3.0444 40 1 5.6515 -2.1214 -3.9461 41 1 5.9695 -4.8351 -4.4985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174046788.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:16 Heat of formation + Delta-G solvation = 36.729253 kcal Electronic energy + Delta-G solvation = -21917.628952 eV Core-core repulsion = 18954.289273 eV Total energy + Delta-G solvation = -2963.339679 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.73319 -37.57293 -35.01775 -34.36922 -33.50869 -30.07757 -29.55095 -29.03500 -27.16435 -26.80181 -25.03669 -23.10818 -22.12317 -20.76104 -19.93974 -19.51371 -17.21825 -16.72813 -16.19502 -15.45445 -15.14803 -14.85263 -14.09964 -13.85858 -13.69099 -13.36721 -13.25881 -12.70224 -12.61869 -12.37629 -12.09854 -12.00647 -11.73839 -11.70056 -11.41947 -11.22973 -11.06627 -10.91876 -10.82480 -10.51628 -10.36155 -10.23777 -9.59138 -9.46485 -9.12788 -9.08943 -8.47160 -8.16323 -7.33236 -6.71459 -6.32674 -4.15532 1.67070 1.70767 2.85424 3.09347 3.11689 3.20200 3.27022 3.98231 4.05960 4.48108 4.74386 5.01055 5.11481 5.30928 5.41985 5.53535 5.58016 5.74360 5.77148 5.86594 5.90350 6.06018 6.09914 6.16333 6.27495 6.33122 6.40177 6.49766 6.55705 6.60709 6.65201 6.79312 6.82277 7.03598 7.10036 7.15722 7.27002 7.30801 7.54928 7.75787 7.87165 8.20815 8.24429 8.47877 8.75909 8.82481 9.01035 9.12237 10.30746 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016933 B = 0.005732 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.151559 B = 4884.095746 C = 5182.017621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.059 4.059 3 C -0.139 4.139 4 C -0.079 4.079 5 C -0.114 4.114 6 C -0.135 4.135 7 C -0.121 4.121 8 C -0.129 4.129 9 C 0.180 3.820 10 N -0.704 5.704 11 C 0.106 3.894 12 C -0.157 4.157 13 C -0.200 4.200 14 C -0.141 4.141 15 C -0.138 4.138 16 C 0.073 3.927 17 C -0.467 4.467 18 H 0.070 0.930 19 C 0.078 3.922 20 N -0.802 5.802 21 Si 0.903 3.097 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.268 1.268 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.403 0.597 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.117 0.883 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.950 4.892 8.328 11.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.078 4.078 3 C -0.197 4.197 4 C -0.082 4.082 5 C -0.132 4.132 6 C -0.153 4.153 7 C -0.140 4.140 8 C -0.149 4.149 9 C 0.086 3.914 10 N -0.336 5.336 11 C 0.010 3.990 12 C -0.180 4.180 13 C -0.220 4.220 14 C -0.161 4.161 15 C -0.159 4.159 16 C 0.068 3.932 17 C -0.498 4.498 18 H 0.088 0.912 19 C -0.139 4.139 20 N -0.428 5.428 21 Si 0.728 3.272 22 H -0.191 1.191 23 H -0.205 1.205 24 H -0.193 1.193 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.113 0.887 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.241 0.759 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.135 0.865 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.729 4.855 8.277 11.720 hybrid contribution -0.428 -0.934 -0.488 1.137 sum -7.157 3.921 7.789 11.281 Atomic orbital electron populations 1.21811 0.95142 1.01481 1.01109 1.20082 0.94851 0.95942 0.96901 1.21810 1.02012 0.95104 1.00729 1.20309 0.97161 0.95939 0.94741 1.20817 1.00783 0.99804 0.91808 1.21000 0.99916 0.96376 0.98043 1.20942 0.99470 0.96717 0.96854 1.21602 0.99880 1.01168 0.92250 1.17443 0.94806 0.93073 0.86120 1.41302 1.39929 1.38101 1.14312 1.17801 0.92846 0.96956 0.91432 1.20060 0.99985 0.98834 0.99112 1.20139 1.02030 1.02987 0.96805 1.20301 1.00678 0.98983 0.96115 1.20800 0.99097 0.95882 1.00101 1.17194 0.94126 0.93094 0.88768 1.19073 1.00379 1.09078 1.21270 0.91188 1.25737 0.94733 0.97205 0.96192 1.69830 1.10103 1.33906 1.29007 0.86466 0.80616 0.80107 0.80033 1.19067 1.20516 1.19322 0.93171 0.92722 0.92918 0.88676 0.93435 0.91957 0.92853 0.86606 0.86754 0.86615 0.86100 0.75861 0.89386 0.89809 0.89875 0.86524 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.03 37.16 0.34 -1.49 16 2 C -0.06 -0.93 2.88 -91.77 -0.26 -1.19 16 3 C -0.14 -2.02 8.98 37.15 0.33 -1.69 16 4 C -0.08 -1.27 4.20 -104.40 -0.44 -1.71 16 5 C -0.11 -1.58 8.72 -39.62 -0.35 -1.92 16 6 C -0.14 -1.76 10.04 -39.53 -0.40 -2.16 16 7 C -0.12 -1.68 10.04 -39.61 -0.40 -2.08 16 8 C -0.13 -2.12 9.97 -39.37 -0.39 -2.51 16 9 C 0.18 3.21 4.56 -83.79 -0.38 2.83 16 10 N -0.70 -14.26 4.38 -8.05 -0.04 -14.30 16 11 C 0.11 2.47 5.56 -83.28 -0.46 2.01 16 12 C -0.16 -3.55 8.63 -39.41 -0.34 -3.89 16 13 C -0.20 -4.54 10.03 -39.37 -0.40 -4.93 16 14 C -0.14 -3.36 9.96 -39.98 -0.40 -3.76 16 15 C -0.14 -3.58 8.62 -39.29 -0.34 -3.92 16 16 C 0.07 1.87 5.57 -106.63 -0.59 1.28 16 17 C -0.47 -11.87 8.49 -37.90 -0.32 -12.20 16 18 H 0.07 1.68 6.71 -52.48 -0.35 1.33 16 19 C 0.08 1.92 5.16 -17.33 -0.09 1.83 16 20 N -0.80 -20.76 10.97 55.55 0.61 -20.15 16 21 Si 0.90 18.66 29.59 -169.99 -5.03 13.63 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 H 0.05 0.59 7.55 -51.93 -0.39 0.19 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.10 1.80 6.13 -51.93 -0.32 1.48 16 29 H 0.05 0.60 7.24 -51.93 -0.38 0.22 16 30 H 0.06 1.02 7.52 -51.93 -0.39 0.63 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.12 1.38 7.10 -52.48 -0.37 1.01 16 33 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 35 H 0.12 1.98 8.06 -52.48 -0.42 1.56 16 36 H 0.40 8.13 7.06 -40.82 -0.29 7.84 16 37 H 0.09 1.90 6.53 -52.49 -0.34 1.56 16 38 H 0.08 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.08 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.12 3.14 6.22 -52.48 -0.33 2.81 16 41 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 LS Contribution 331.79 15.07 5.00 5.00 Total: -1.00 -26.68 331.79 -10.02 -36.70 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -5.68 Total: 14.63 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: -4.89 Total: -35.52 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.57 Total: -34.45 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.68 -10.02 -36.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174046788.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.427 kcal (2) G-P(sol) polarization free energy of solvation -26.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds