Wall clock time and date at job start Tue Mar 31 2020 05:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47386 * 2 1 4 4 C 1.50694 * 109.47338 * 179.97438 * 3 2 1 5 5 C 1.38303 * 119.91927 * 90.00225 * 4 3 2 6 6 C 1.38083 * 120.08315 * 179.97438 * 5 4 3 7 7 C 1.38975 * 119.91887 * 0.02562 * 6 5 4 8 8 N 1.39589 * 120.08481 * 180.02562 * 7 6 5 9 9 C 1.38686 * 120.00139 * 187.46661 * 8 7 6 10 10 C 1.38810 * 120.29713 * 253.05736 * 9 8 7 11 11 C 1.38114 * 120.02211 * 180.25987 * 10 9 8 12 12 C 1.38929 * 120.63201 * 359.73798 * 11 10 9 13 13 C 1.36424 * 120.60607 * 359.97438 * 12 11 10 14 14 C 1.40735 * 119.95330 * 0.02562 * 13 12 11 15 15 C 1.41018 * 120.30881 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99646 * 154.64286 * 15 14 13 17 17 C 1.39908 * 120.00226 * 334.65261 * 15 14 13 18 18 N 1.30888 * 119.99779 * 334.26580 * 17 15 14 19 19 Si 1.86797 * 120.00215 * 154.27324 * 17 15 14 20 20 H 1.48500 * 109.47252 * 179.97438 * 19 17 15 21 21 H 1.48504 * 109.47055 * 299.99655 * 19 17 15 22 22 H 1.48501 * 109.47213 * 59.99243 * 19 17 15 23 23 C 1.38975 * 119.83917 * 0.27053 * 7 6 5 24 24 C 1.38084 * 119.91917 * 359.45334 * 23 7 6 25 25 H 1.08996 * 109.47286 * 300.00495 * 1 2 3 26 26 H 1.09006 * 109.47278 * 60.00143 * 1 2 3 27 27 H 1.08999 * 109.47122 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47487 * 240.00295 * 2 1 3 29 29 H 1.09006 * 109.47278 * 119.99857 * 2 1 3 30 30 H 1.09002 * 109.47268 * 59.99943 * 3 2 1 31 31 H 1.08997 * 109.47034 * 300.00250 * 3 2 1 32 32 H 1.07998 * 119.96167 * 359.95373 * 5 4 3 33 33 H 1.07999 * 120.04763 * 179.97438 * 6 5 4 34 34 H 0.97001 * 119.99447 * 7.46334 * 8 7 6 35 35 H 1.08003 * 119.99102 * 359.97438 * 10 9 8 36 36 H 1.08001 * 119.68195 * 179.76379 * 11 10 9 37 37 H 1.08004 * 119.69413 * 180.02562 * 12 11 10 38 38 H 1.08007 * 120.02005 * 180.02562 * 13 12 11 39 39 H 0.97000 * 119.99851 * 354.78201 * 18 17 15 40 40 H 1.08000 * 120.04250 * 179.70835 * 23 7 6 41 41 H 1.08000 * 119.96494 * 180.29489 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 6 4.2373 1.4423 -1.1978 6 6 5.6181 1.4429 -1.2012 7 6 6.3142 1.4430 0.0017 8 7 7.7101 1.4441 0.0023 9 6 8.4031 1.2881 1.1935 10 6 9.0547 2.3691 1.7713 11 6 9.7476 2.2061 2.9548 12 6 9.7969 0.9672 3.5815 13 6 9.1610 -0.1112 3.0393 14 6 8.4475 0.0265 1.8340 15 6 7.7879 -1.0833 1.2667 16 1 6.9391 -0.9323 0.6162 17 6 8.2329 -2.3798 1.5467 18 7 9.4815 -2.5852 1.8815 19 14 7.0452 -3.8178 1.4427 20 1 7.7588 -5.0749 1.7831 21 1 5.9284 -3.6076 2.3987 22 1 6.5042 -3.9142 0.0631 23 6 5.6172 1.4369 1.2040 24 6 4.2364 1.4422 1.1996 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.6957 1.4415 -2.1322 33 1 6.1566 1.4423 -2.1373 34 1 8.1953 1.5538 -0.8304 35 1 9.0236 3.3368 1.2928 36 1 10.2558 3.0501 3.3975 37 1 10.3429 0.8570 4.5068 38 1 9.2051 -1.0699 3.5347 39 1 10.1157 -1.8515 1.8621 40 1 6.1549 1.4322 2.1407 41 1 3.6940 1.4422 2.1336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175717990.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:21 Heat of formation + Delta-G solvation = 20.684394 kcal Electronic energy + Delta-G solvation = -21295.541059 eV Core-core repulsion = 18331.505623 eV Total energy + Delta-G solvation = -2964.035436 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.28098 -37.86496 -35.48769 -34.01818 -33.59933 -30.40545 -29.91517 -29.37016 -28.01489 -25.57063 -24.67014 -22.33690 -21.79836 -21.01949 -20.67067 -19.83371 -17.95019 -16.77974 -16.18142 -15.09185 -14.94038 -14.69125 -14.44678 -13.98222 -13.71106 -13.60645 -13.31638 -12.82525 -12.76366 -12.45952 -12.32760 -12.07797 -11.98154 -11.82300 -11.31140 -11.15960 -10.94765 -10.77151 -10.63919 -10.51710 -10.43339 -10.30106 -10.07632 -9.72237 -9.25424 -8.94444 -8.31197 -7.75312 -7.66869 -7.23640 -6.55290 -4.48015 2.06026 2.18581 2.66124 2.74322 3.14049 3.24646 3.34287 3.97253 4.37887 4.48648 4.51229 5.08417 5.10775 5.24976 5.36222 5.42699 5.56058 5.66425 5.73198 5.89958 5.94713 6.00994 6.04227 6.07488 6.15677 6.18284 6.33509 6.42816 6.44444 6.51042 6.62944 6.84550 6.97577 7.02849 7.07581 7.24626 7.27225 7.42793 7.59828 7.68579 7.74823 7.86806 8.06758 8.13435 8.43253 8.49335 8.78395 8.92468 9.96833 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013817 B = 0.005972 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.981297 B = 4687.665258 C = 5983.602849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.065 4.065 4 C -0.162 4.162 5 C -0.075 4.075 6 C -0.209 4.209 7 C 0.235 3.765 8 N -0.664 5.664 9 C -0.001 4.001 10 C -0.077 4.077 11 C -0.255 4.255 12 C -0.082 4.082 13 C -0.213 4.213 14 C 0.099 3.901 15 C -0.497 4.497 16 H 0.082 0.918 17 C 0.039 3.961 18 N -0.791 5.791 19 Si 1.059 2.941 20 H -0.274 1.274 21 H -0.273 1.273 22 H -0.275 1.275 23 C -0.170 4.170 24 C -0.074 4.074 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.390 0.610 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.299 0.701 40 H 0.122 0.878 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.985 4.153 -3.571 11.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.102 4.102 4 C -0.164 4.164 5 C -0.093 4.093 6 C -0.232 4.232 7 C 0.131 3.869 8 N -0.284 5.284 9 C -0.095 4.095 10 C -0.097 4.097 11 C -0.275 4.275 12 C -0.101 4.101 13 C -0.233 4.233 14 C 0.095 3.905 15 C -0.524 4.524 16 H 0.100 0.900 17 C -0.183 4.183 18 N -0.414 5.414 19 Si 0.883 3.117 20 H -0.199 1.199 21 H -0.198 1.198 22 H -0.200 1.200 23 C -0.193 4.193 24 C -0.093 4.093 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.225 0.775 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.140 0.860 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.952 2.466 -3.154 10.727 hybrid contribution 0.547 1.677 -0.497 1.833 sum -9.405 4.144 -3.651 10.906 Atomic orbital electron populations 1.21795 0.96387 1.01279 1.01425 1.21556 0.94838 0.97040 1.02467 1.20392 0.91870 0.96368 1.01563 1.19418 0.94692 1.09143 0.93156 1.20520 0.93198 0.98869 0.96750 1.20464 0.94280 1.12506 0.95945 1.17953 0.84044 0.91529 0.93413 1.41204 1.01535 1.78018 1.07645 1.17271 1.07121 0.93949 0.91151 1.20795 0.97912 0.95902 0.95062 1.20145 1.10694 0.96822 0.99827 1.20398 0.98305 0.93423 0.97960 1.20855 1.06440 0.98384 0.97628 1.17811 0.90143 0.91907 0.90685 1.20502 1.14135 0.91640 1.26121 0.90012 1.27024 0.98061 1.01933 0.91323 1.70495 1.03267 1.38507 1.29108 0.83710 0.75232 0.74647 0.78140 1.19855 1.19782 1.20029 1.20705 0.93735 1.07569 0.97241 1.20678 0.93495 0.98250 0.96832 0.92952 0.93032 0.93024 0.92045 0.91860 0.92015 0.92119 0.87286 0.87121 0.77540 0.89167 0.89202 0.89254 0.87597 0.88691 0.86050 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.15 0.37 -1.11 16 2 C -0.12 -1.46 5.92 -26.73 -0.16 -1.61 16 3 C -0.06 -0.81 5.34 -27.88 -0.15 -0.96 16 4 C -0.16 -2.56 5.14 -104.57 -0.54 -3.09 16 5 C -0.07 -1.19 9.69 -39.61 -0.38 -1.57 16 6 C -0.21 -3.65 9.90 -39.37 -0.39 -4.04 16 7 C 0.24 4.68 5.22 -83.78 -0.44 4.24 16 8 N -0.66 -13.65 4.91 -8.04 -0.04 -13.69 16 9 C 0.00 -0.03 4.64 -83.28 -0.39 -0.42 16 10 C -0.08 -1.67 9.96 -39.42 -0.39 -2.06 16 11 C -0.25 -5.50 10.03 -39.37 -0.40 -5.89 16 12 C -0.08 -1.84 9.96 -39.98 -0.40 -2.24 16 13 C -0.21 -5.26 7.89 -39.29 -0.31 -5.57 16 14 C 0.10 2.48 4.76 -106.64 -0.51 1.98 16 15 C -0.50 -12.70 8.27 -37.90 -0.31 -13.02 16 16 H 0.08 2.14 6.32 -52.49 -0.33 1.80 16 17 C 0.04 0.98 4.93 -17.33 -0.09 0.89 16 18 N -0.79 -20.50 12.34 55.55 0.69 -19.82 16 19 Si 1.06 21.80 30.00 -169.99 -5.10 16.70 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 C -0.17 -3.45 8.68 -39.37 -0.34 -3.79 16 24 C -0.07 -1.29 9.69 -39.61 -0.38 -1.68 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 31 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 32 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 33 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 34 H 0.39 7.23 8.84 -40.82 -0.36 6.87 16 35 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 36 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 38 H 0.11 2.71 6.49 -52.48 -0.34 2.37 16 39 H 0.30 7.94 6.67 -40.82 -0.27 7.67 16 40 H 0.12 2.72 6.75 -52.49 -0.35 2.37 16 41 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -26.23 338.80 -10.50 -36.73 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -5.95 Total: 14.91 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: -5.20 Total: -39.94 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.65 Total: -33.50 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.10 Total: 16.70 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -26.23 -10.50 -36.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175717990.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.415 kcal (2) G-P(sol) polarization free energy of solvation -26.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds