Wall clock time and date at job start Tue Mar 31 2020 05:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47479 * 2 1 4 4 C 1.50692 * 109.47158 * 180.02562 * 3 2 1 5 5 C 1.38304 * 119.92331 * 89.99764 * 4 3 2 6 6 C 1.38079 * 120.08046 * 179.97438 * 5 4 3 7 7 C 1.38974 * 119.92055 * 0.02562 * 6 5 4 8 8 N 1.39603 * 120.07999 * 179.97438 * 7 6 5 9 9 C 1.38815 * 119.99632 * 147.66720 * 8 7 6 10 10 C 1.39608 * 119.83923 * 155.95752 * 9 8 7 11 11 C 1.36314 * 120.15323 * 179.97438 * 10 9 8 12 12 C 1.40903 * 119.84045 * 359.97438 * 11 10 9 13 13 C 1.41105 * 120.14925 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00440 * 330.42574 * 13 12 11 15 15 C 1.39850 * 119.99497 * 150.41760 * 13 12 11 16 16 N 1.30906 * 120.00520 * 338.61390 * 15 13 12 17 17 Si 1.86803 * 119.99812 * 158.60449 * 15 13 12 18 18 H 1.48500 * 109.46982 * 94.98379 * 17 15 13 19 19 H 1.48491 * 109.47499 * 214.98908 * 17 15 13 20 20 H 1.48508 * 109.46992 * 334.99004 * 17 15 13 21 21 C 1.40904 * 119.69373 * 0.25575 * 12 11 10 22 22 C 1.36312 * 119.83763 * 359.48641 * 21 12 11 23 23 C 1.38965 * 119.84055 * 0.27682 * 7 6 5 24 24 C 1.38082 * 119.91901 * 359.44485 * 23 7 6 25 25 H 1.09003 * 109.47297 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47087 * 300.00649 * 1 2 3 27 27 H 1.09001 * 109.47060 * 60.00207 * 1 2 3 28 28 H 1.09003 * 109.47539 * 239.99769 * 2 1 3 29 29 H 1.09001 * 109.47060 * 119.99793 * 2 1 3 30 30 H 1.08994 * 109.46968 * 59.99605 * 3 2 1 31 31 H 1.09001 * 109.46806 * 299.99948 * 3 2 1 32 32 H 1.07995 * 119.95857 * 359.95652 * 5 4 3 33 33 H 1.08001 * 120.03994 * 179.97438 * 6 5 4 34 34 H 0.96994 * 119.99702 * 327.67100 * 8 7 6 35 35 H 1.07993 * 119.92058 * 359.97438 * 10 9 8 36 36 H 1.08000 * 120.07657 * 179.97438 * 11 10 9 37 37 H 0.96998 * 120.00131 * 180.02562 * 16 15 13 38 38 H 1.07996 * 120.07659 * 179.74899 * 21 12 11 39 39 H 1.07994 * 119.91663 * 180.25500 * 22 21 12 40 40 H 1.08002 * 120.04439 * 179.72615 * 23 7 6 41 41 H 1.08007 * 119.96248 * 180.25164 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2364 1.4425 -1.1996 6 6 5.6172 1.4430 -1.2040 7 6 6.3142 1.4428 -0.0017 8 7 7.7102 1.4427 -0.0022 9 6 8.4046 2.0856 1.0134 10 6 9.7098 1.6946 1.3179 11 6 10.3978 2.3218 2.3136 12 6 9.7888 3.3673 3.0357 13 6 10.4947 4.0207 4.0681 14 1 11.2448 3.4859 4.6318 15 6 10.2232 5.3609 4.3612 16 7 9.6563 6.1256 3.4626 17 14 10.6692 6.0598 6.0352 18 1 12.0002 6.7141 5.9597 19 1 9.6488 7.0587 6.4424 20 1 10.7134 4.9618 7.0342 21 6 8.4694 3.7533 2.7262 22 6 7.7951 3.1208 1.7245 23 6 5.6182 1.4364 1.2011 24 6 4.2374 1.4417 1.1978 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.6941 1.4420 -2.1335 33 1 6.1549 1.4426 -2.1406 34 1 8.1948 0.9936 -0.7122 35 1 10.1754 0.8935 0.7633 36 1 11.4073 2.0181 2.5484 37 1 9.4684 7.0553 3.6658 38 1 7.9952 4.5511 3.2784 39 1 6.7854 3.4184 1.4834 40 1 6.1565 1.4317 2.1374 41 1 3.6957 1.4408 2.1322 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175718263.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:23 Heat of formation + Delta-G solvation = 26.246861 kcal Electronic energy + Delta-G solvation = -20449.687320 eV Core-core repulsion = 17485.893090 eV Total energy + Delta-G solvation = -2963.794230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.54595 -37.82721 -35.77367 -34.23170 -32.98538 -30.70545 -30.18197 -29.50373 -28.53419 -25.86832 -24.40823 -22.55175 -21.97045 -20.98616 -20.77244 -20.00328 -17.34350 -16.81187 -16.45760 -15.35918 -15.27450 -15.06573 -14.18424 -13.96858 -13.90738 -13.61208 -13.12787 -13.08310 -12.84582 -12.63670 -12.28261 -12.11194 -11.97374 -11.80719 -11.54314 -11.27277 -11.13633 -11.04234 -10.89186 -10.77652 -10.66950 -10.52349 -9.83679 -9.66839 -9.44006 -9.05205 -8.57254 -7.85815 -7.61945 -6.81431 -6.43310 -4.22029 1.74540 1.77525 2.80477 2.98297 3.08974 3.12771 3.21371 3.95793 4.10080 4.16676 4.62678 4.88314 4.89558 5.06098 5.19874 5.32142 5.47276 5.50918 5.63635 5.70560 5.76016 5.78264 5.89317 5.92210 6.10265 6.13476 6.15772 6.23411 6.26338 6.37627 6.69183 6.75914 6.84354 6.91481 6.99258 7.05191 7.21230 7.25592 7.49628 7.54289 7.70084 8.01678 8.14380 8.34634 8.47199 8.61727 8.89021 8.97409 10.21481 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023714 B = 0.003386 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.430856 B = 8268.099568 C = 9031.429995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.070 4.070 4 C -0.141 4.141 5 C -0.084 4.084 6 C -0.186 4.186 7 C 0.204 3.796 8 N -0.679 5.679 9 C 0.038 3.962 10 C -0.126 4.126 11 C -0.200 4.200 12 C 0.099 3.901 13 C -0.469 4.469 14 H 0.077 0.923 15 C 0.079 3.921 16 N -0.794 5.794 17 Si 0.901 3.099 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.138 4.138 22 C -0.128 4.128 23 C -0.163 4.163 24 C -0.083 4.083 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.395 0.605 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.280 0.720 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.128 0.872 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.004 -7.479 -5.933 15.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.108 4.108 4 C -0.143 4.143 5 C -0.102 4.102 6 C -0.208 4.208 7 C 0.103 3.897 8 N -0.300 5.300 9 C -0.057 4.057 10 C -0.146 4.146 11 C -0.220 4.220 12 C 0.096 3.904 13 C -0.499 4.499 14 H 0.095 0.905 15 C -0.139 4.139 16 N -0.420 5.420 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.201 1.201 20 H -0.184 1.184 21 C -0.158 4.158 22 C -0.149 4.149 23 C -0.185 4.185 24 C -0.102 4.102 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.229 0.771 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.127 0.873 39 H 0.114 0.886 40 H 0.146 0.854 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.045 -7.152 -5.856 15.183 hybrid contribution 0.526 0.366 0.364 0.737 sum -11.519 -6.787 -5.492 14.453 Atomic orbital electron populations 1.21799 0.96171 1.01372 1.01674 1.21531 0.95104 0.96791 1.02246 1.20470 0.91562 0.96606 1.02136 1.19566 0.95000 1.06605 0.93150 1.20635 0.93292 0.99286 0.97025 1.20742 0.94291 1.09372 0.96421 1.17788 0.83865 0.94772 0.93318 1.41631 1.01915 1.58657 1.27787 1.17203 0.93506 0.98296 0.96655 1.19985 0.94191 1.00499 0.99971 1.20582 0.98798 1.03208 0.99410 1.17568 0.91085 0.90718 0.91037 1.19401 1.19647 0.95440 1.15407 0.90461 1.25840 0.93273 0.97101 0.97642 1.69874 1.32226 1.06931 1.32928 0.86421 0.78884 0.79203 0.82945 1.19684 1.20084 1.18440 1.20753 0.94505 1.01151 0.99360 1.20315 0.99246 0.96246 0.99101 1.21077 0.93992 1.05659 0.97752 1.20774 0.93494 0.98778 0.97145 0.92966 0.92803 0.92885 0.92091 0.91960 0.91601 0.91745 0.86865 0.86702 0.77117 0.89221 0.88635 0.90938 0.87298 0.88620 0.85409 0.86669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.15 0.37 -0.84 16 2 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 3 C -0.07 -0.74 5.34 -27.88 -0.15 -0.89 16 4 C -0.14 -1.90 5.14 -104.58 -0.54 -2.43 16 5 C -0.08 -1.13 9.69 -39.62 -0.38 -1.51 16 6 C -0.19 -2.77 9.96 -39.37 -0.39 -3.17 16 7 C 0.20 3.51 5.88 -83.78 -0.49 3.02 16 8 N -0.68 -12.28 5.42 -8.30 -0.05 -12.32 16 9 C 0.04 0.81 6.10 -83.68 -0.51 0.30 16 10 C -0.13 -2.74 9.87 -39.76 -0.39 -3.14 16 11 C -0.20 -4.81 9.74 -39.27 -0.38 -5.20 16 12 C 0.10 2.60 5.49 -106.79 -0.59 2.01 16 13 C -0.47 -12.37 8.98 -37.89 -0.34 -12.71 16 14 H 0.08 1.96 7.93 -52.49 -0.42 1.55 16 15 C 0.08 1.99 5.00 -17.34 -0.09 1.90 16 16 N -0.79 -20.70 11.56 55.54 0.64 -20.06 16 17 Si 0.90 18.65 29.61 -169.99 -5.03 13.62 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 21 C -0.14 -3.53 8.63 -39.27 -0.34 -3.87 16 22 C -0.13 -2.99 7.78 -39.77 -0.31 -3.30 16 23 C -0.16 -2.81 7.68 -39.37 -0.30 -3.11 16 24 C -0.08 -1.23 9.69 -39.61 -0.38 -1.62 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 31 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 34 H 0.39 6.17 8.88 -40.82 -0.36 5.80 16 35 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 36 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 37 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 38 H 0.11 2.89 6.69 -52.49 -0.35 2.54 16 39 H 0.10 2.14 6.21 -52.49 -0.33 1.82 16 40 H 0.13 2.41 6.58 -52.49 -0.35 2.06 16 41 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 LS Contribution 340.47 15.07 5.13 5.13 Total: -1.00 -27.24 340.47 -10.69 -37.92 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -6.00 Total: 11.55 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: -5.38 Total: -35.84 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.60 Total: -32.38 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.24 -10.69 -37.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175718263.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.169 kcal (2) G-P(sol) polarization free energy of solvation -27.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds