Wall clock time and date at job start Tue Mar 31 2020 05:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47479 * 2 1 4 4 C 1.50692 * 109.47158 * 180.02562 * 3 2 1 5 5 C 1.38304 * 119.92331 * 89.99764 * 4 3 2 6 6 C 1.38079 * 120.08046 * 179.97438 * 5 4 3 7 7 C 1.38974 * 119.92055 * 0.02562 * 6 5 4 8 8 N 1.39603 * 120.07999 * 179.97438 * 7 6 5 9 9 C 1.38815 * 119.99632 * 147.66720 * 8 7 6 10 10 C 1.39608 * 119.83923 * 155.95752 * 9 8 7 11 11 C 1.36314 * 120.15323 * 179.97438 * 10 9 8 12 12 C 1.40903 * 119.84045 * 359.97438 * 11 10 9 13 13 C 1.41105 * 120.14925 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00440 * 330.42574 * 13 12 11 15 15 C 1.39850 * 119.99497 * 150.41760 * 13 12 11 16 16 N 1.30906 * 120.00520 * 338.61390 * 15 13 12 17 17 Si 1.86803 * 119.99812 * 158.60449 * 15 13 12 18 18 H 1.48500 * 109.46982 * 94.98379 * 17 15 13 19 19 H 1.48491 * 109.47499 * 214.98908 * 17 15 13 20 20 H 1.48508 * 109.46992 * 334.99004 * 17 15 13 21 21 C 1.40904 * 119.69373 * 0.25575 * 12 11 10 22 22 C 1.36312 * 119.83763 * 359.48641 * 21 12 11 23 23 C 1.38965 * 119.84055 * 0.27682 * 7 6 5 24 24 C 1.38082 * 119.91901 * 359.44485 * 23 7 6 25 25 H 1.09003 * 109.47297 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47087 * 300.00649 * 1 2 3 27 27 H 1.09001 * 109.47060 * 60.00207 * 1 2 3 28 28 H 1.09003 * 109.47539 * 239.99769 * 2 1 3 29 29 H 1.09001 * 109.47060 * 119.99793 * 2 1 3 30 30 H 1.08994 * 109.46968 * 59.99605 * 3 2 1 31 31 H 1.09001 * 109.46806 * 299.99948 * 3 2 1 32 32 H 1.07995 * 119.95857 * 359.95652 * 5 4 3 33 33 H 1.08001 * 120.03994 * 179.97438 * 6 5 4 34 34 H 0.96994 * 119.99702 * 327.67100 * 8 7 6 35 35 H 1.07993 * 119.92058 * 359.97438 * 10 9 8 36 36 H 1.08000 * 120.07657 * 179.97438 * 11 10 9 37 37 H 0.96998 * 120.00131 * 180.02562 * 16 15 13 38 38 H 1.07996 * 120.07659 * 179.74899 * 21 12 11 39 39 H 1.07994 * 119.91663 * 180.25500 * 22 21 12 40 40 H 1.08002 * 120.04439 * 179.72615 * 23 7 6 41 41 H 1.08007 * 119.96248 * 180.25164 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2364 1.4425 -1.1996 6 6 5.6172 1.4430 -1.2040 7 6 6.3142 1.4428 -0.0017 8 7 7.7102 1.4427 -0.0022 9 6 8.4046 2.0856 1.0134 10 6 9.7098 1.6946 1.3179 11 6 10.3978 2.3218 2.3136 12 6 9.7888 3.3673 3.0357 13 6 10.4947 4.0207 4.0681 14 1 11.2448 3.4859 4.6318 15 6 10.2232 5.3609 4.3612 16 7 9.6563 6.1256 3.4626 17 14 10.6692 6.0598 6.0352 18 1 12.0002 6.7141 5.9597 19 1 9.6488 7.0587 6.4424 20 1 10.7134 4.9618 7.0342 21 6 8.4694 3.7533 2.7262 22 6 7.7951 3.1208 1.7245 23 6 5.6182 1.4364 1.2011 24 6 4.2374 1.4417 1.1978 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.6941 1.4420 -2.1335 33 1 6.1549 1.4426 -2.1406 34 1 8.1948 0.9936 -0.7122 35 1 10.1754 0.8935 0.7633 36 1 11.4073 2.0181 2.5484 37 1 9.4684 7.0553 3.6658 38 1 7.9952 4.5511 3.2784 39 1 6.7854 3.4184 1.4834 40 1 6.1565 1.4317 2.1374 41 1 3.6957 1.4408 2.1322 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175718263.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:23 Heat of formation + Delta-G solvation = 15.168557 kcal Electronic energy + Delta-G solvation = -20450.167711 eV Core-core repulsion = 17485.893090 eV Total energy + Delta-G solvation = -2964.274621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.89765 -39.41578 -37.13508 -35.54670 -34.53850 -32.00644 -31.60115 -31.19562 -30.04374 -27.15306 -25.95045 -23.88987 -23.09221 -22.66359 -22.09762 -21.34777 -19.23016 -18.18157 -18.03761 -16.97561 -16.44432 -16.21478 -15.72168 -15.32357 -15.18224 -14.73432 -14.58255 -14.31819 -14.25683 -14.04824 -13.78549 -13.62329 -13.29584 -13.19083 -12.82308 -12.78855 -12.72063 -12.38905 -12.05860 -11.90117 -11.76707 -11.64342 -11.42100 -11.34124 -11.17207 -10.81843 -9.77810 -9.49898 -9.37661 -8.66049 -8.05091 -6.14962 0.47607 0.56931 1.06365 1.11460 1.38783 1.49839 1.55590 2.23207 2.68353 2.73567 2.98514 3.72381 3.99056 3.99484 4.17718 4.25032 4.34168 4.36917 4.40749 4.56945 4.62747 4.66739 4.78328 4.91573 4.95629 4.99837 5.08834 5.09198 5.18977 5.20844 5.28584 5.33660 5.35997 5.50065 5.52193 5.55890 5.63151 5.73896 5.85420 5.88160 6.08902 6.13093 6.30459 6.58493 6.77145 6.97427 7.01223 7.13463 8.38406 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023714 B = 0.003386 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.430856 B = 8268.099568 C = 9031.429995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.069 4.069 4 C -0.131 4.131 5 C -0.084 4.084 6 C -0.180 4.180 7 C 0.176 3.824 8 N -0.678 5.678 9 C 0.062 3.938 10 C -0.131 4.131 11 C -0.208 4.208 12 C 0.063 3.937 13 C -0.507 4.507 14 H 0.075 0.925 15 C 0.038 3.962 16 N -0.833 5.833 17 Si 0.975 3.025 18 H -0.263 1.263 19 H -0.268 1.268 20 H -0.259 1.259 21 C -0.155 4.155 22 C -0.136 4.136 23 C -0.182 4.182 24 C -0.092 4.092 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.135 0.865 34 H 0.408 0.592 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.286 0.714 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.734 -8.334 -7.426 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.107 4.107 4 C -0.132 4.132 5 C -0.102 4.102 6 C -0.201 4.201 7 C 0.076 3.924 8 N -0.302 5.302 9 C -0.034 4.034 10 C -0.152 4.152 11 C -0.228 4.228 12 C 0.060 3.940 13 C -0.537 4.537 14 H 0.093 0.907 15 C -0.176 4.176 16 N -0.459 5.459 17 Si 0.796 3.204 18 H -0.187 1.187 19 H -0.193 1.193 20 H -0.183 1.183 21 C -0.175 4.175 22 C -0.156 4.156 23 C -0.204 4.204 24 C -0.111 4.111 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.164 0.836 33 H 0.153 0.847 34 H 0.245 0.755 35 H 0.142 0.858 36 H 0.122 0.878 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.810 -8.040 -7.385 17.604 hybrid contribution 0.843 0.474 0.633 1.156 sum -12.967 -7.565 -6.751 16.461 Atomic orbital electron populations 1.21775 0.94802 1.02014 1.02182 1.21494 0.96282 0.95747 1.01897 1.20542 0.89311 0.97663 1.03161 1.19966 0.96729 1.03973 0.92539 1.21050 0.92897 0.97923 0.98370 1.21021 0.95067 1.07810 0.96227 1.17994 0.83381 0.96800 0.94222 1.41489 1.02460 1.58856 1.27349 1.17273 0.93383 0.96766 0.95930 1.20285 0.94291 1.01037 0.99580 1.20809 0.99406 1.02838 0.99751 1.17873 0.91619 0.92199 0.92270 1.19618 1.20888 0.96514 1.16715 0.90723 1.26657 0.92924 0.96948 1.01117 1.69928 1.33722 1.07453 1.34809 0.85312 0.78916 0.78356 0.77839 1.18747 1.19287 1.18303 1.20652 0.94836 1.01536 1.00511 1.20346 0.99413 0.96781 0.99103 1.21026 0.95126 1.07242 0.96961 1.20979 0.92702 0.98764 0.98651 0.92325 0.92634 0.92067 0.91966 0.92855 0.91218 0.90161 0.83635 0.84693 0.75524 0.85816 0.87797 0.90400 0.89363 0.88294 0.88056 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.21 16 2 C -0.12 -1.88 5.92 30.59 0.18 -1.70 16 3 C -0.07 -1.25 5.34 29.85 0.16 -1.09 16 4 C -0.13 -3.16 5.14 -19.83 -0.10 -3.26 16 5 C -0.08 -1.97 9.69 22.25 0.22 -1.76 16 6 C -0.18 -4.87 9.96 22.41 0.22 -4.65 16 7 C 0.18 5.84 5.88 38.25 0.23 6.06 16 8 N -0.68 -23.75 5.42 -180.19 -0.98 -24.73 16 9 C 0.06 2.69 6.10 38.70 0.24 2.93 16 10 C -0.13 -5.67 9.87 22.15 0.22 -5.45 16 11 C -0.21 -10.23 9.74 22.47 0.22 -10.01 16 12 C 0.06 3.46 5.49 -21.27 -0.12 3.35 16 13 C -0.51 -27.97 8.98 23.36 0.21 -27.76 16 14 H 0.07 3.97 7.93 -2.91 -0.02 3.95 16 15 C 0.04 1.96 5.00 85.22 0.43 2.38 16 16 N -0.83 -45.17 11.56 21.81 0.25 -44.92 16 17 Si 0.97 39.31 29.61 68.60 2.03 41.34 16 18 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 19 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 21 C -0.16 -8.38 8.63 22.47 0.19 -8.19 16 22 C -0.14 -6.51 7.78 22.15 0.17 -6.34 16 23 C -0.18 -6.28 7.68 22.41 0.17 -6.11 16 24 C -0.09 -2.65 9.69 22.25 0.22 -2.43 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.23 8.08 -2.39 -0.02 1.21 16 31 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 32 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 33 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 34 H 0.41 11.93 8.88 -92.71 -0.82 11.11 16 35 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 36 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 37 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 38 H 0.09 5.01 6.69 -2.91 -0.02 4.99 16 39 H 0.10 4.59 6.21 -2.91 -0.02 4.57 16 40 H 0.10 3.99 6.58 -2.91 -0.02 3.97 16 41 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -61.05 340.47 5.06 -55.99 By element: Atomic # 1 Polarization: 37.35 SS G_CDS: 0.20 Total: 37.54 kcal Atomic # 6 Polarization: -68.79 SS G_CDS: 3.56 Total: -65.23 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -0.73 Total: -69.65 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -61.05 5.06 -55.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175718263.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.159 kcal (2) G-P(sol) polarization free energy of solvation -61.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds