Wall clock time and date at job start Tue Mar 31 2020 05:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47351 * 2 1 4 4 C 1.50698 * 109.47307 * 179.97438 * 3 2 1 5 5 C 1.38285 * 119.92204 * 89.99899 * 4 3 2 6 6 C 1.38098 * 120.07343 * 180.02562 * 5 4 3 7 7 C 1.38929 * 119.92658 * 359.97438 * 6 5 4 8 8 N 1.39710 * 120.08023 * 180.02562 * 7 6 5 9 9 C 1.39722 * 120.00312 * 154.57506 * 8 7 6 10 10 C 1.39349 * 119.94991 * 328.43480 * 9 8 7 11 11 C 1.38479 * 120.42122 * 179.97438 * 10 9 8 12 12 C 1.37698 * 120.32472 * 0.02562 * 11 10 9 13 13 C 1.40758 * 119.89496 * 359.97438 * 12 11 10 14 14 C 1.41403 * 120.20325 * 179.97438 * 13 12 11 15 15 H 1.08007 * 120.00432 * 27.31349 * 14 13 12 16 16 C 1.39926 * 119.99818 * 207.31492 * 14 13 12 17 17 N 1.30827 * 120.00155 * 11.93057 * 16 14 13 18 18 Si 1.86804 * 120.00128 * 191.93143 * 16 14 13 19 19 H 1.48503 * 109.46794 * 59.99846 * 18 16 14 20 20 H 1.48494 * 109.47092 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47163 * 300.00112 * 18 16 14 22 22 C 1.38293 * 119.95083 * 148.14938 * 9 8 7 23 23 C 1.38926 * 119.84294 * 0.26960 * 7 6 5 24 24 C 1.38101 * 119.92509 * 359.49961 * 23 7 6 25 25 H 1.09005 * 109.47156 * 59.99941 * 1 2 3 26 26 H 1.08997 * 109.47248 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47137 * 300.00582 * 1 2 3 28 28 H 1.08997 * 109.47274 * 239.99894 * 2 1 3 29 29 H 1.08993 * 109.46932 * 119.99661 * 2 1 3 30 30 H 1.09006 * 109.46781 * 59.99765 * 3 2 1 31 31 H 1.09005 * 109.47038 * 300.00131 * 3 2 1 32 32 H 1.07997 * 119.96682 * 0.02562 * 5 4 3 33 33 H 1.07999 * 120.04016 * 179.97438 * 6 5 4 34 34 H 0.96999 * 119.99871 * 334.30998 * 8 7 6 35 35 H 1.07998 * 119.79295 * 359.96712 * 10 9 8 36 36 H 1.07995 * 119.83656 * 180.02562 * 11 10 9 37 37 H 1.07997 * 120.04657 * 179.97438 * 12 11 10 38 38 H 0.97001 * 120.00102 * 179.97438 * 17 16 14 39 39 H 1.07993 * 120.16648 * 0.02562 * 22 9 8 40 40 H 1.08002 * 120.03710 * 179.72566 * 23 7 6 41 41 H 1.08005 * 119.95813 * 180.25076 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2373 1.4423 -1.1976 6 6 5.6183 1.4417 -1.2007 7 6 6.3141 1.4419 0.0019 8 7 7.7112 1.4419 0.0025 9 6 8.4094 1.9616 1.0955 10 6 7.8660 3.0121 1.8325 11 6 8.5493 3.5342 2.9179 12 6 9.7744 3.0208 3.2806 13 6 10.3359 1.9597 2.5457 14 6 11.5938 1.4278 2.9121 15 1 11.9265 1.4857 3.9380 16 6 12.4076 0.8266 1.9455 17 7 12.1219 0.9590 0.6757 18 14 13.9019 -0.1650 2.4682 19 1 13.4693 -1.2965 3.3272 20 1 14.5910 -0.6938 1.2639 21 1 14.8328 0.7065 3.2293 22 6 9.6359 1.4287 1.4480 23 6 5.6173 1.4370 1.2037 24 6 4.2363 1.4424 1.1995 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.6959 1.4426 -2.1321 33 1 6.1569 1.4412 -2.1368 34 1 8.1965 1.0776 -0.7542 35 1 6.9059 3.4217 1.5553 36 1 8.1192 4.3480 3.4826 37 1 10.3036 3.4317 4.1277 38 1 12.6862 0.5425 0.0056 39 1 10.0561 0.6119 0.8802 40 1 6.1550 1.4327 2.1404 41 1 3.6941 1.4427 2.1336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175721617.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:25 Heat of formation + Delta-G solvation = 23.814761 kcal Electronic energy + Delta-G solvation = -20507.132634 eV Core-core repulsion = 17543.232941 eV Total energy + Delta-G solvation = -2963.899693 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.51186 -37.74632 -35.71001 -34.10846 -33.26505 -30.68083 -30.17213 -29.52100 -27.88795 -25.46374 -25.19348 -22.55221 -22.01729 -20.92647 -20.73493 -19.91658 -17.53506 -16.74681 -15.93962 -15.39129 -15.25819 -14.78664 -14.57266 -14.04819 -13.88299 -13.59911 -13.18127 -13.07285 -12.88991 -12.67793 -12.39199 -12.17203 -11.97967 -11.68181 -11.38410 -11.16647 -11.12004 -10.89681 -10.83611 -10.74477 -10.55712 -10.52771 -9.93336 -9.71623 -9.50073 -9.20237 -8.57472 -7.88317 -7.39809 -6.80120 -6.33100 -4.42179 1.76227 1.79029 2.78923 3.03266 3.05396 3.08178 3.21166 3.91984 4.08597 4.16886 4.64420 4.88632 4.89631 5.06301 5.19934 5.32422 5.46932 5.50949 5.64425 5.70610 5.76016 5.78315 5.89079 5.92932 6.07202 6.17336 6.23355 6.27869 6.35581 6.49702 6.69604 6.76310 6.79134 6.98401 7.02776 7.03898 7.22015 7.29562 7.36946 7.73861 7.83020 7.95053 8.05375 8.35301 8.45086 8.67473 8.88070 8.93994 10.19622 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029834 B = 0.003264 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.305815 B = 8576.450739 C = 8903.806349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.069 4.069 4 C -0.144 4.144 5 C -0.082 4.082 6 C -0.188 4.188 7 C 0.208 3.792 8 N -0.685 5.685 9 C 0.171 3.829 10 C -0.265 4.265 11 C -0.077 4.077 12 C -0.238 4.238 13 C 0.127 3.873 14 C -0.462 4.462 15 H 0.077 0.923 16 C 0.074 3.926 17 N -0.801 5.801 18 Si 0.910 3.090 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.193 4.193 23 C -0.165 4.165 24 C -0.082 4.082 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.402 0.598 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.279 0.721 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.366 -1.734 -3.376 14.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.107 4.107 4 C -0.145 4.145 5 C -0.101 4.101 6 C -0.210 4.210 7 C 0.107 3.893 8 N -0.306 5.306 9 C 0.077 3.923 10 C -0.286 4.286 11 C -0.096 4.096 12 C -0.258 4.258 13 C 0.124 3.876 14 C -0.492 4.492 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.427 5.427 18 Si 0.735 3.265 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.190 1.190 22 C -0.215 4.215 23 C -0.187 4.187 24 C -0.101 4.101 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.237 0.763 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.141 0.859 40 H 0.149 0.851 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.238 -1.739 -3.502 14.765 hybrid contribution 1.058 -0.505 -0.236 1.196 sum -13.179 -2.244 -3.737 13.881 Atomic orbital electron populations 1.21800 0.96179 1.01389 1.01627 1.21535 0.95088 0.96799 1.02315 1.20463 0.91556 0.96610 1.02048 1.19557 0.94993 1.06829 0.93166 1.20625 0.93218 0.99184 0.97048 1.20693 0.94331 1.09662 0.96356 1.17862 0.83761 0.94175 0.93548 1.42259 1.02090 1.65380 1.20842 1.17613 0.92718 0.93510 0.88442 1.20210 1.02507 1.02966 1.02943 1.20361 0.94958 0.98116 0.96157 1.21013 0.98065 1.01718 1.04991 1.17389 0.91610 0.88564 0.90016 1.19535 1.00689 1.32967 0.96016 0.90458 1.25887 0.99292 0.94597 0.94450 1.69790 1.36860 1.35055 1.01025 0.86335 0.80762 0.80460 0.78945 1.18902 1.20399 1.19020 1.21113 0.94365 1.03227 1.02779 1.21082 0.93990 1.05836 0.97766 1.20758 0.93449 0.98785 0.97093 0.92898 0.92952 0.92833 0.92054 0.91937 0.91668 0.91773 0.86823 0.86593 0.76307 0.88857 0.89151 0.88944 0.91001 0.85883 0.85099 0.86686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.15 5.92 -26.73 -0.16 -1.30 16 3 C -0.07 -0.72 5.34 -27.88 -0.15 -0.87 16 4 C -0.14 -1.92 5.14 -104.59 -0.54 -2.46 16 5 C -0.08 -1.12 9.69 -39.62 -0.38 -1.50 16 6 C -0.19 -2.89 9.94 -39.38 -0.39 -3.28 16 7 C 0.21 3.71 6.04 -83.76 -0.51 3.20 16 8 N -0.68 -13.44 5.46 -8.45 -0.05 -13.49 16 9 C 0.17 3.93 5.91 -83.83 -0.50 3.43 16 10 C -0.26 -5.92 7.75 -39.08 -0.30 -6.22 16 11 C -0.08 -1.73 10.02 -39.69 -0.40 -2.13 16 12 C -0.24 -5.80 9.79 -38.83 -0.38 -6.18 16 13 C 0.13 3.36 5.56 -106.85 -0.59 2.77 16 14 C -0.46 -12.15 9.06 -37.75 -0.34 -12.49 16 15 H 0.08 1.95 7.87 -52.48 -0.41 1.54 16 16 C 0.07 1.85 5.24 -17.35 -0.09 1.76 16 17 N -0.80 -20.43 10.82 55.55 0.60 -19.83 16 18 Si 0.91 18.61 29.58 -169.99 -5.03 13.59 16 19 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 C -0.19 -4.90 8.57 -38.67 -0.33 -5.23 16 23 C -0.17 -2.88 7.85 -39.38 -0.31 -3.19 16 24 C -0.08 -1.21 9.69 -39.61 -0.38 -1.59 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 31 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 34 H 0.40 7.30 8.89 -40.82 -0.36 6.94 16 35 H 0.09 1.98 6.55 -52.49 -0.34 1.64 16 36 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 38 H 0.28 6.52 8.30 -40.82 -0.34 6.19 16 39 H 0.12 3.24 6.17 -52.49 -0.32 2.92 16 40 H 0.13 2.50 6.33 -52.49 -0.33 2.16 16 41 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 339.88 15.07 5.12 5.12 Total: -1.00 -26.91 339.88 -10.71 -37.62 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -5.98 Total: 13.11 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: -5.39 Total: -36.12 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.55 Total: -33.32 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -26.91 -10.71 -37.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175721617.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.439 kcal (2) G-P(sol) polarization free energy of solvation -26.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds