Wall clock time and date at job start Tue Mar 31 2020 05:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46892 * 2 1 4 4 C 1.50698 * 109.46939 * 119.99568 * 2 1 3 5 5 C 1.38325 * 119.96131 * 300.00113 * 4 2 1 6 6 C 1.38283 * 120.16004 * 180.02562 * 5 4 2 7 7 C 1.38110 * 120.08020 * 359.97438 * 6 5 4 8 8 C 1.38950 * 119.91725 * 0.02562 * 7 6 5 9 9 N 1.39595 * 120.07672 * 179.97438 * 8 7 6 10 10 C 1.38810 * 120.00096 * 328.01567 * 9 8 7 11 11 C 1.39608 * 119.84525 * 338.70384 * 10 9 8 12 12 C 1.36307 * 120.15725 * 179.71784 * 11 10 9 13 13 C 1.40902 * 119.83792 * 0.55448 * 12 11 10 14 14 C 1.41105 * 120.15169 * 179.69936 * 13 12 11 15 15 H 1.08000 * 120.00104 * 159.37865 * 14 13 12 16 16 C 1.39854 * 120.00266 * 339.37292 * 14 13 12 17 17 N 1.30915 * 119.99678 * 333.25909 * 16 14 13 18 18 Si 1.86793 * 120.00094 * 153.25104 * 16 14 13 19 19 H 1.48505 * 109.47016 * 94.98199 * 18 16 14 20 20 H 1.48505 * 109.47397 * 214.98120 * 18 16 14 21 21 H 1.48503 * 109.47541 * 334.98137 * 18 16 14 22 22 C 1.40898 * 119.69561 * 359.72000 * 13 12 11 23 23 C 1.36305 * 119.84111 * 359.97438 * 22 13 12 24 24 C 1.38069 * 119.95938 * 120.27926 * 4 2 1 25 25 H 1.09000 * 109.47275 * 300.00262 * 1 2 3 26 26 H 1.09006 * 109.47040 * 60.00536 * 1 2 3 27 27 H 1.09001 * 109.47089 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47275 * 239.99738 * 2 1 3 29 29 H 1.09000 * 109.47374 * 59.99799 * 3 2 1 30 30 H 1.09003 * 109.47040 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.46840 * 299.99587 * 3 2 1 32 32 H 1.08000 * 119.92058 * 0.02730 * 5 4 2 33 33 H 1.07998 * 119.95966 * 179.97438 * 6 5 4 34 34 H 1.08000 * 120.03701 * 179.97438 * 7 6 5 35 35 H 0.96998 * 119.99449 * 148.28469 * 9 8 7 36 36 H 1.08001 * 119.91825 * 359.97438 * 11 10 9 37 37 H 1.08005 * 120.07940 * 180.27408 * 12 11 10 38 38 H 0.97005 * 119.99481 * 179.97438 * 17 16 14 39 39 H 1.08005 * 120.08116 * 179.97438 * 22 13 12 40 40 H 1.08004 * 119.92319 * 179.97438 * 23 22 13 41 41 H 1.07994 * 120.03884 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6976 -0.2369 2.4864 6 6 2.1567 -0.8852 3.6183 7 6 2.9510 -2.0086 3.4984 8 6 3.2893 -2.4870 2.2384 9 7 4.0924 -3.6219 2.1134 10 6 5.0644 -3.8927 3.0666 11 6 5.5499 -2.8638 3.8756 12 6 6.5003 -3.1238 4.8176 13 6 7.0010 -4.4325 4.9657 14 6 7.9894 -4.7077 5.9343 15 1 8.1362 -5.7190 6.2838 16 6 8.7791 -3.6711 6.4419 17 7 9.0013 -2.6030 5.7181 18 14 9.5166 -3.8102 8.1524 19 1 10.9005 -4.3399 8.0532 20 1 9.5444 -2.4694 8.7902 21 1 8.6915 -4.7321 8.9738 22 6 6.5106 -5.4649 4.1418 23 6 5.5557 -5.1919 3.2082 24 6 2.8308 -1.8295 1.1030 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.0762 0.6411 2.5832 33 1 1.8937 -0.5126 4.5973 34 1 3.3095 -2.5142 4.3829 35 1 3.9738 -4.2190 1.3582 36 1 5.1686 -1.8603 3.7577 37 1 6.8718 -2.3277 5.4458 38 1 9.5488 -1.8838 6.0703 39 1 6.8903 -6.4702 4.2496 40 1 5.1791 -5.9821 2.5756 41 1 3.0957 -2.1956 0.1221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175775408.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:28 Heat of formation + Delta-G solvation = 31.115168 kcal Electronic energy + Delta-G solvation = -20723.041897 eV Core-core repulsion = 17759.458773 eV Total energy + Delta-G solvation = -2963.583124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.63847 -37.90614 -35.89622 -34.30071 -33.04967 -30.34064 -29.71073 -29.07636 -27.85068 -27.18893 -24.76354 -22.86542 -22.36166 -20.92673 -20.67664 -19.23426 -17.37823 -16.60141 -16.46862 -15.56730 -15.18438 -14.98998 -14.19893 -14.00114 -13.74511 -13.51022 -13.27809 -13.04219 -12.80334 -12.44436 -12.26215 -12.15062 -11.82604 -11.71561 -11.49370 -11.38703 -11.15066 -11.10610 -11.03795 -10.71268 -10.62919 -10.46700 -9.91406 -9.75397 -9.42431 -8.99875 -8.41045 -7.93267 -7.59446 -6.90262 -6.47525 -4.18998 1.76023 1.81971 2.79657 3.01388 3.06757 3.10401 3.24189 3.91740 4.10779 4.19096 4.57764 4.77127 4.86405 5.18288 5.29818 5.45176 5.53063 5.55075 5.67678 5.70665 5.75444 5.76642 5.89026 6.00761 6.07457 6.15491 6.19309 6.22289 6.30087 6.38658 6.77252 6.80776 6.87358 6.96007 6.98836 7.04470 7.20019 7.28534 7.52564 7.55949 7.73308 8.01287 8.16567 8.35608 8.50680 8.61562 8.87283 8.98524 10.11329 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028407 B = 0.003501 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.431357 B = 7995.284834 C = 8484.740869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.055 4.055 3 C -0.143 4.143 4 C -0.047 4.047 5 C -0.171 4.171 6 C -0.086 4.086 7 C -0.171 4.171 8 C 0.210 3.790 9 N -0.677 5.677 10 C 0.029 3.971 11 C -0.128 4.128 12 C -0.149 4.149 13 C 0.095 3.905 14 C -0.463 4.463 15 H 0.078 0.922 16 C 0.081 3.919 17 N -0.781 5.781 18 Si 0.900 3.100 19 H -0.271 1.271 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.208 4.208 23 C -0.121 4.121 24 C -0.186 4.186 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.394 0.606 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.281 0.719 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.651 5.397 -6.993 14.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 C -0.200 4.200 4 C -0.047 4.047 5 C -0.191 4.191 6 C -0.105 4.105 7 C -0.193 4.193 8 C 0.108 3.892 9 N -0.297 5.297 10 C -0.066 4.066 11 C -0.148 4.148 12 C -0.169 4.169 13 C 0.092 3.908 14 C -0.492 4.492 15 H 0.096 0.904 16 C -0.139 4.139 17 N -0.406 5.406 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.228 4.228 23 C -0.142 4.142 24 C -0.208 4.208 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.146 0.854 35 H 0.228 0.772 36 H 0.115 0.885 37 H 0.133 0.867 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.420 5.627 -6.885 14.474 hybrid contribution 0.506 -0.255 0.437 0.716 sum -10.914 5.372 -6.448 13.767 Atomic orbital electron populations 1.21835 0.94625 1.01848 1.01564 1.20090 0.95665 0.95954 0.95671 1.21841 1.01400 0.95212 1.01534 1.19460 0.96388 0.94602 0.94292 1.20622 1.04767 1.01830 0.91913 1.20877 0.96502 0.94987 0.98089 1.21105 1.01644 0.99573 0.96967 1.17749 0.90200 0.88011 0.93261 1.41624 1.35844 1.25048 1.27226 1.17183 0.97154 0.93776 0.98448 1.20352 0.99445 0.96093 0.98918 1.20833 0.97865 0.97870 1.00356 1.17562 0.91384 0.91248 0.90570 1.19455 1.14892 0.95209 1.19613 0.90373 1.25908 0.94920 0.94524 0.98512 1.69928 1.28210 1.06925 1.35510 0.86442 0.79572 0.78879 0.82734 1.19592 1.19970 1.18298 1.20468 1.03526 0.98700 1.00152 1.19927 1.00667 0.93048 1.00591 1.20623 1.05290 0.97865 0.97049 0.92448 0.92799 0.92652 0.90886 0.92438 0.92481 0.92798 0.87108 0.86625 0.85362 0.77190 0.88492 0.86734 0.90786 0.88777 0.89341 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.01 37.16 0.33 -0.98 16 2 C -0.06 -0.60 3.09 -91.77 -0.28 -0.88 16 3 C -0.14 -1.41 9.01 37.16 0.33 -1.08 16 4 C -0.05 -0.64 4.78 -104.65 -0.50 -1.14 16 5 C -0.17 -2.35 8.71 -39.53 -0.34 -2.70 16 6 C -0.09 -1.29 10.04 -39.61 -0.40 -1.69 16 7 C -0.17 -3.00 7.55 -39.36 -0.30 -3.30 16 8 C 0.21 3.67 5.95 -83.78 -0.50 3.17 16 9 N -0.68 -12.43 5.43 -8.31 -0.05 -12.47 16 10 C 0.03 0.62 6.19 -83.68 -0.52 0.11 16 11 C -0.13 -3.00 7.69 -39.77 -0.31 -3.30 16 12 C -0.15 -3.85 8.70 -39.27 -0.34 -4.20 16 13 C 0.10 2.51 5.60 -106.79 -0.60 1.91 16 14 C -0.46 -12.16 8.99 -37.89 -0.34 -12.50 16 15 H 0.08 1.98 7.97 -52.49 -0.42 1.56 16 16 C 0.08 2.01 4.95 -17.34 -0.09 1.92 16 17 N -0.78 -20.05 11.27 55.54 0.63 -19.43 16 18 Si 0.90 18.39 29.63 -169.99 -5.04 13.36 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 22 C -0.21 -5.05 9.74 -39.27 -0.38 -5.43 16 23 C -0.12 -2.68 9.86 -39.77 -0.39 -3.07 16 24 C -0.19 -2.84 9.58 -39.37 -0.38 -3.21 16 25 H 0.06 0.52 7.38 -51.93 -0.38 0.14 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.76 7.87 -51.93 -0.41 0.35 16 29 H 0.06 0.56 7.38 -51.93 -0.38 0.17 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.11 1.29 7.09 -52.49 -0.37 0.92 16 33 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.13 2.46 6.40 -52.49 -0.34 2.13 16 35 H 0.39 6.26 8.86 -40.82 -0.36 5.90 16 36 H 0.10 2.19 5.95 -52.49 -0.31 1.88 16 37 H 0.11 3.05 6.21 -52.48 -0.33 2.72 16 38 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 39 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 40 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.11 1.56 7.94 -52.49 -0.42 1.14 16 LS Contribution 335.18 15.07 5.05 5.05 Total: -1.00 -27.15 335.18 -10.21 -37.36 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -5.81 Total: 12.50 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: -4.99 Total: -36.37 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.58 Total: -31.90 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.04 Total: 13.36 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.15 -10.21 -37.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175775408.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.478 kcal (2) G-P(sol) polarization free energy of solvation -27.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds