Wall clock time and date at job start Tue Mar 31 2020 05:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46892 * 2 1 4 4 C 1.50698 * 109.46939 * 119.99568 * 2 1 3 5 5 C 1.38325 * 119.96131 * 300.00113 * 4 2 1 6 6 C 1.38283 * 120.16004 * 180.02562 * 5 4 2 7 7 C 1.38110 * 120.08020 * 359.97438 * 6 5 4 8 8 C 1.38950 * 119.91725 * 0.02562 * 7 6 5 9 9 N 1.39595 * 120.07672 * 179.97438 * 8 7 6 10 10 C 1.38810 * 120.00096 * 328.01567 * 9 8 7 11 11 C 1.39608 * 119.84525 * 338.70384 * 10 9 8 12 12 C 1.36307 * 120.15725 * 179.71784 * 11 10 9 13 13 C 1.40902 * 119.83792 * 0.55448 * 12 11 10 14 14 C 1.41105 * 120.15169 * 179.69936 * 13 12 11 15 15 H 1.08000 * 120.00104 * 159.37865 * 14 13 12 16 16 C 1.39854 * 120.00266 * 339.37292 * 14 13 12 17 17 N 1.30915 * 119.99678 * 333.25909 * 16 14 13 18 18 Si 1.86793 * 120.00094 * 153.25104 * 16 14 13 19 19 H 1.48505 * 109.47016 * 94.98199 * 18 16 14 20 20 H 1.48505 * 109.47397 * 214.98120 * 18 16 14 21 21 H 1.48503 * 109.47541 * 334.98137 * 18 16 14 22 22 C 1.40898 * 119.69561 * 359.72000 * 13 12 11 23 23 C 1.36305 * 119.84111 * 359.97438 * 22 13 12 24 24 C 1.38069 * 119.95938 * 120.27926 * 4 2 1 25 25 H 1.09000 * 109.47275 * 300.00262 * 1 2 3 26 26 H 1.09006 * 109.47040 * 60.00536 * 1 2 3 27 27 H 1.09001 * 109.47089 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47275 * 239.99738 * 2 1 3 29 29 H 1.09000 * 109.47374 * 59.99799 * 3 2 1 30 30 H 1.09003 * 109.47040 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.46840 * 299.99587 * 3 2 1 32 32 H 1.08000 * 119.92058 * 0.02730 * 5 4 2 33 33 H 1.07998 * 119.95966 * 179.97438 * 6 5 4 34 34 H 1.08000 * 120.03701 * 179.97438 * 7 6 5 35 35 H 0.96998 * 119.99449 * 148.28469 * 9 8 7 36 36 H 1.08001 * 119.91825 * 359.97438 * 11 10 9 37 37 H 1.08005 * 120.07940 * 180.27408 * 12 11 10 38 38 H 0.97005 * 119.99481 * 179.97438 * 17 16 14 39 39 H 1.08005 * 120.08116 * 179.97438 * 22 13 12 40 40 H 1.08004 * 119.92319 * 179.97438 * 23 22 13 41 41 H 1.07994 * 120.03884 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6976 -0.2369 2.4864 6 6 2.1567 -0.8852 3.6183 7 6 2.9510 -2.0086 3.4984 8 6 3.2893 -2.4870 2.2384 9 7 4.0924 -3.6219 2.1134 10 6 5.0644 -3.8927 3.0666 11 6 5.5499 -2.8638 3.8756 12 6 6.5003 -3.1238 4.8176 13 6 7.0010 -4.4325 4.9657 14 6 7.9894 -4.7077 5.9343 15 1 8.1362 -5.7190 6.2838 16 6 8.7791 -3.6711 6.4419 17 7 9.0013 -2.6030 5.7181 18 14 9.5166 -3.8102 8.1524 19 1 10.9005 -4.3399 8.0532 20 1 9.5444 -2.4694 8.7902 21 1 8.6915 -4.7321 8.9738 22 6 6.5106 -5.4649 4.1418 23 6 5.5557 -5.1919 3.2082 24 6 2.8308 -1.8295 1.1030 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.0762 0.6411 2.5832 33 1 1.8937 -0.5126 4.5973 34 1 3.3095 -2.5142 4.3829 35 1 3.9738 -4.2190 1.3582 36 1 5.1686 -1.8603 3.7577 37 1 6.8718 -2.3277 5.4458 38 1 9.5488 -1.8838 6.0703 39 1 6.8903 -6.4702 4.2496 40 1 5.1791 -5.9821 2.5756 41 1 3.0957 -2.1956 0.1221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175775408.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:27 Heat of formation + Delta-G solvation = 19.832937 kcal Electronic energy + Delta-G solvation = -20723.531131 eV Core-core repulsion = 17759.458773 eV Total energy + Delta-G solvation = -2964.072358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.97537 -39.49737 -37.27210 -35.69319 -34.67294 -31.78452 -31.48617 -30.53743 -29.33830 -27.91696 -26.52073 -24.06327 -23.74139 -22.62905 -22.25868 -20.47099 -19.26206 -18.08044 -17.83389 -16.99011 -16.80249 -16.17116 -15.73937 -15.42404 -14.86341 -14.68678 -14.61045 -14.35790 -14.30054 -13.98114 -13.86173 -13.41942 -13.19639 -12.98837 -12.89696 -12.79196 -12.66215 -12.38439 -12.35494 -12.01051 -11.74298 -11.64027 -11.50281 -11.37402 -11.16357 -10.80140 -9.64261 -9.51853 -9.43088 -8.73252 -8.11691 -6.10825 0.50289 0.55088 1.07656 1.12941 1.38419 1.49826 1.58209 2.21212 2.66643 2.70102 2.99268 3.76005 3.80990 3.98918 4.19956 4.35181 4.38539 4.39800 4.42936 4.49589 4.63341 4.70596 4.77418 4.87372 4.98396 5.01807 5.04978 5.10634 5.14356 5.21805 5.28322 5.34523 5.38487 5.45255 5.51640 5.59317 5.68584 5.74631 5.82883 5.90724 6.08680 6.13488 6.30930 6.58228 6.77300 6.95611 7.01828 7.14576 8.30156 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028407 B = 0.003501 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.431357 B = 7995.284834 C = 8484.740869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.055 4.055 3 C -0.142 4.142 4 C -0.045 4.045 5 C -0.162 4.162 6 C -0.090 4.090 7 C -0.194 4.194 8 C 0.185 3.815 9 N -0.676 5.676 10 C 0.050 3.950 11 C -0.134 4.134 12 C -0.169 4.169 13 C 0.061 3.939 14 C -0.502 4.502 15 H 0.076 0.924 16 C 0.041 3.959 17 N -0.818 5.818 18 Si 0.974 3.026 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.259 1.259 22 C -0.218 4.218 23 C -0.126 4.126 24 C -0.185 4.185 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.102 0.898 35 H 0.407 0.593 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.288 0.712 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.415 6.457 -8.248 17.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.073 4.073 3 C -0.199 4.199 4 C -0.046 4.046 5 C -0.181 4.181 6 C -0.109 4.109 7 C -0.215 4.215 8 C 0.085 3.915 9 N -0.299 5.299 10 C -0.046 4.046 11 C -0.155 4.155 12 C -0.189 4.189 13 C 0.059 3.941 14 C -0.531 4.531 15 H 0.094 0.906 16 C -0.175 4.175 17 N -0.443 5.443 18 Si 0.795 3.205 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.183 1.183 22 C -0.238 4.238 23 C -0.147 4.147 24 C -0.207 4.207 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.156 0.844 33 H 0.151 0.849 34 H 0.120 0.880 35 H 0.243 0.757 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.121 0.879 40 H 0.140 0.860 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.226 6.701 -8.176 16.931 hybrid contribution 0.824 -0.480 0.636 1.146 sum -12.402 6.221 -7.540 15.792 Atomic orbital electron populations 1.21820 0.93166 1.01919 1.02705 1.20167 0.96781 0.96148 0.94232 1.21842 1.00601 0.94710 1.02743 1.19891 0.95115 0.93862 0.95703 1.20978 1.03811 1.01981 0.91379 1.21130 0.95826 0.94206 0.99725 1.21062 1.03284 1.00914 0.96273 1.17958 0.91187 0.88306 0.94040 1.41487 1.35478 1.25985 1.26984 1.17261 0.96512 0.93211 0.97579 1.20398 0.99184 0.96883 0.99052 1.20749 0.99224 0.97538 1.01425 1.17878 0.92439 0.92041 0.91778 1.19673 1.16286 0.95798 1.21366 0.90631 1.26729 0.94944 0.93821 1.02053 1.69968 1.29221 1.07835 1.37261 0.85321 0.78823 0.79034 0.77327 1.18575 1.19083 1.18306 1.20697 1.04043 0.98729 1.00349 1.20222 1.00064 0.94015 1.00433 1.20866 1.04873 0.98011 0.96955 0.92140 0.90920 0.93131 0.90318 0.92128 0.93753 0.90798 0.84363 0.84879 0.87961 0.75658 0.88149 0.88601 0.90102 0.87937 0.86009 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.01 71.98 0.65 -1.41 16 2 C -0.05 -0.99 3.09 -11.54 -0.04 -1.03 16 3 C -0.14 -2.33 9.01 71.98 0.65 -1.68 16 4 C -0.05 -1.11 4.78 -19.88 -0.10 -1.20 16 5 C -0.16 -4.01 8.71 22.30 0.19 -3.81 16 6 C -0.09 -2.60 10.04 22.25 0.22 -2.38 16 7 C -0.19 -6.81 7.55 22.41 0.17 -6.64 16 8 C 0.19 6.33 5.95 38.26 0.23 6.56 16 9 N -0.68 -24.31 5.43 -180.19 -0.98 -25.29 16 10 C 0.05 2.20 6.19 38.70 0.24 2.44 16 11 C -0.13 -6.53 7.69 22.15 0.17 -6.36 16 12 C -0.17 -9.19 8.70 22.47 0.20 -9.00 16 13 C 0.06 3.38 5.60 -21.27 -0.12 3.27 16 14 C -0.50 -27.58 8.99 23.37 0.21 -27.37 16 15 H 0.08 4.00 7.97 -2.91 -0.02 3.98 16 16 C 0.04 2.09 4.95 85.22 0.42 2.51 16 17 N -0.82 -43.61 11.27 21.81 0.25 -43.36 16 18 Si 0.97 38.65 29.63 68.60 2.03 40.69 16 19 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 20 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 22 C -0.22 -10.81 9.74 22.47 0.22 -10.59 16 23 C -0.13 -5.55 9.86 22.15 0.22 -5.33 16 24 C -0.19 -5.29 9.58 22.41 0.21 -5.07 16 25 H 0.06 0.86 7.38 -2.39 -0.02 0.85 16 26 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 28 H 0.08 1.37 7.87 -2.39 -0.02 1.35 16 29 H 0.06 0.96 7.38 -2.39 -0.02 0.94 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.14 2.67 7.09 -2.91 -0.02 2.65 16 33 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 34 H 0.10 4.09 6.40 -2.91 -0.02 4.07 16 35 H 0.41 12.30 8.86 -92.71 -0.82 11.48 16 36 H 0.10 4.71 5.95 -2.91 -0.02 4.70 16 37 H 0.10 5.45 6.21 -2.91 -0.02 5.43 16 38 H 0.29 13.86 8.30 -92.70 -0.77 13.09 16 39 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 40 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 41 H 0.13 3.23 7.94 -2.91 -0.02 3.20 16 Total: -1.00 -60.82 335.18 5.26 -55.57 By element: Atomic # 1 Polarization: 39.29 SS G_CDS: 0.21 Total: 39.50 kcal Atomic # 6 Polarization: -70.85 SS G_CDS: 3.75 Total: -67.10 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: -0.73 Total: -68.65 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.69 kcal Total: -60.82 5.26 -55.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175775408.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.399 kcal (2) G-P(sol) polarization free energy of solvation -60.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds