Wall clock time and date at job start Tue Mar 31 2020 05:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47341 * 2 1 4 4 C 1.50697 * 109.47280 * 239.99361 * 2 1 3 5 5 C 1.38322 * 119.95730 * 59.72698 * 4 2 1 6 6 C 1.38269 * 120.14786 * 179.76098 * 5 4 2 7 7 C 1.38119 * 120.07901 * 0.51757 * 6 5 4 8 8 C 1.38902 * 119.92132 * 359.73747 * 7 6 5 9 9 N 1.39714 * 120.07570 * 179.97438 * 8 7 6 10 10 C 1.39722 * 120.00219 * 331.79885 * 9 8 7 11 11 C 1.39355 * 119.94979 * 324.16630 * 10 9 8 12 12 C 1.38476 * 120.42091 * 179.72052 * 11 10 9 13 13 C 1.37694 * 120.32499 * 0.55089 * 12 11 10 14 14 C 1.40756 * 119.89598 * 359.72430 * 13 12 11 15 15 C 1.41409 * 120.20462 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99949 * 204.27915 * 15 14 13 17 17 C 1.39925 * 120.00059 * 24.28390 * 15 14 13 18 18 N 1.30828 * 119.99996 * 19.27574 * 17 15 14 19 19 Si 1.86801 * 120.00072 * 199.27108 * 17 15 14 20 20 H 1.48501 * 109.47112 * 89.99770 * 19 17 15 21 21 H 1.48493 * 109.47273 * 210.00387 * 19 17 15 22 22 H 1.48502 * 109.46923 * 330.00096 * 19 17 15 23 23 C 1.38294 * 119.95423 * 144.43164 * 10 9 8 24 24 C 1.38072 * 119.96888 * 240.00028 * 4 2 1 25 25 H 1.08998 * 109.47440 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47031 * 60.00139 * 1 2 3 27 27 H 1.08997 * 109.47256 * 300.00102 * 1 2 3 28 28 H 1.09007 * 109.46596 * 119.99901 * 2 1 3 29 29 H 1.09003 * 109.47344 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47335 * 299.99554 * 3 2 1 31 31 H 1.09006 * 109.47232 * 59.99555 * 3 2 1 32 32 H 1.07995 * 119.92076 * 0.02562 * 5 4 2 33 33 H 1.08006 * 119.95923 * 180.25765 * 6 5 4 34 34 H 1.07994 * 120.03798 * 179.76596 * 7 6 5 35 35 H 0.97000 * 119.99954 * 151.79425 * 9 8 7 36 36 H 1.07997 * 119.79002 * 359.97438 * 11 10 9 37 37 H 1.07994 * 119.83688 * 180.27078 * 12 11 10 38 38 H 1.08002 * 120.04997 * 179.74563 * 13 12 11 39 39 H 0.97008 * 120.00204 * 180.02562 * 18 17 15 40 40 H 1.07993 * 120.16256 * 359.97438 * 23 10 9 41 41 H 1.08004 * 120.03551 * 359.96082 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2303 5 6 1.6930 -0.2406 -2.4863 6 6 2.1558 -0.8866 -3.6178 7 6 2.9502 -2.0101 -3.4974 8 6 3.2885 -2.4877 -2.2378 9 7 4.0913 -3.6242 -2.1123 10 6 4.0805 -4.6011 -3.1112 11 6 2.8952 -4.8979 -3.7812 12 6 2.8746 -5.8602 -4.7768 13 6 4.0237 -6.5426 -5.1080 14 6 5.2272 -6.2577 -4.4360 15 6 6.4111 -6.9549 -4.7705 16 1 7.2078 -7.0446 -4.0469 17 6 6.5505 -7.5286 -6.0392 18 7 5.7944 -7.1234 -7.0270 19 14 7.8161 -8.8730 -6.3224 20 1 7.1971 -10.1979 -6.0642 21 1 8.2939 -8.8151 -7.7272 22 1 8.9635 -8.6747 -5.4008 23 6 5.2449 -5.2758 -3.4299 24 6 2.8261 -1.8330 -1.1028 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5139 0.8901 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.0687 0.6352 -2.5832 33 1 1.8924 -0.5146 -4.5970 34 1 3.3081 -2.5163 -4.3817 35 1 4.6563 -3.7351 -1.3316 36 1 1.9878 -4.3713 -3.5251 37 1 1.9517 -6.0796 -5.2929 38 1 4.0016 -7.2951 -5.8824 39 1 5.8907 -7.5213 -7.9064 40 1 6.1632 -5.0494 -2.9087 41 1 3.0876 -2.2016 -0.1218 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175778493.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:30 Heat of formation + Delta-G solvation = 26.510682 kcal Electronic energy + Delta-G solvation = -20634.041760 eV Core-core repulsion = 17670.258971 eV Total energy + Delta-G solvation = -2963.782790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.61784 -37.84154 -35.87819 -34.26608 -33.11470 -30.28000 -29.92776 -29.00253 -27.21623 -27.02990 -25.28320 -23.06310 -22.24457 -20.87081 -20.70051 -19.34810 -17.44770 -16.66970 -15.94866 -15.58328 -15.16736 -14.79539 -14.45703 -14.20566 -13.78962 -13.52634 -13.34415 -13.16433 -12.87705 -12.44223 -12.27002 -12.15149 -11.89912 -11.60565 -11.41503 -11.35934 -11.16910 -11.11938 -10.89491 -10.72394 -10.51561 -10.48105 -10.00486 -9.70783 -9.41303 -9.15207 -8.46209 -7.89451 -7.51556 -6.81666 -6.43915 -4.39374 1.72773 1.80142 2.77157 3.03161 3.06150 3.09130 3.22084 3.89774 4.02432 4.16678 4.60858 4.73585 4.83467 5.15536 5.26278 5.41792 5.49896 5.52573 5.66269 5.68167 5.72034 5.73823 5.85967 5.96827 6.04453 6.16353 6.19595 6.30163 6.33679 6.46779 6.75371 6.79497 6.91200 6.94641 7.00120 7.02442 7.20252 7.26422 7.35525 7.72738 7.79938 8.01714 8.09490 8.36790 8.39174 8.64060 8.87144 8.95608 10.15333 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.041851 B = 0.003171 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.882005 B = 8828.906300 C = 9017.261251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.055 4.055 3 C -0.142 4.142 4 C -0.047 4.047 5 C -0.169 4.169 6 C -0.085 4.085 7 C -0.166 4.166 8 C 0.212 3.788 9 N -0.691 5.691 10 C 0.182 3.818 11 C -0.265 4.265 12 C -0.085 4.085 13 C -0.181 4.181 14 C 0.130 3.870 15 C -0.464 4.464 16 H 0.078 0.922 17 C 0.078 3.922 18 N -0.789 5.789 19 Si 0.907 3.093 20 H -0.267 1.267 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.256 4.256 24 C -0.185 4.185 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.129 0.871 35 H 0.398 0.602 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.281 0.719 40 H 0.093 0.907 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.413 10.679 8.556 15.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 C -0.199 4.199 4 C -0.048 4.048 5 C -0.189 4.189 6 C -0.104 4.104 7 C -0.187 4.187 8 C 0.111 3.889 9 N -0.313 5.313 10 C 0.088 3.912 11 C -0.286 4.286 12 C -0.104 4.104 13 C -0.200 4.200 14 C 0.126 3.874 15 C -0.493 4.493 16 H 0.096 0.904 17 C -0.140 4.140 18 N -0.414 5.414 19 Si 0.732 3.268 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.278 4.278 24 C -0.207 4.207 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.147 0.853 35 H 0.233 0.767 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.475 10.590 8.179 14.866 hybrid contribution 0.825 -0.688 -0.012 1.074 sum -5.650 9.903 8.167 14.024 Atomic orbital electron populations 1.21836 0.94547 1.02007 1.01566 1.20089 0.95793 0.95854 0.95639 1.21837 1.01227 0.95268 1.01586 1.19462 0.96400 0.94603 0.94330 1.20643 1.04512 1.01838 0.91904 1.20887 0.96557 0.94807 0.98137 1.21062 1.02959 0.97839 0.96865 1.17786 0.91029 0.86679 0.93381 1.42172 1.46565 1.18907 1.23657 1.17399 0.93874 0.89613 0.90309 1.20164 0.95254 1.07232 1.05976 1.20507 0.97119 0.96318 0.96484 1.21274 0.91612 1.03098 1.04054 1.17383 0.92835 0.88194 0.88938 1.19559 1.01877 1.29658 0.98225 0.90435 1.25901 0.96456 0.96135 0.95548 1.69847 1.35119 1.34974 1.01441 0.86331 0.80958 0.81369 0.78182 1.19226 1.20316 1.18631 1.20723 0.94720 1.04820 1.07536 1.20598 1.03694 0.99452 0.96998 0.92532 0.92436 0.92771 0.90852 0.92600 0.92433 0.92773 0.87028 0.86534 0.85340 0.76673 0.89182 0.89221 0.86589 0.90829 0.88882 0.86732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.00 37.16 0.33 -1.00 16 2 C -0.06 -0.58 3.09 -91.78 -0.28 -0.86 16 3 C -0.14 -1.30 9.01 37.15 0.33 -0.96 16 4 C -0.05 -0.63 4.78 -104.65 -0.50 -1.13 16 5 C -0.17 -2.27 8.71 -39.54 -0.34 -2.62 16 6 C -0.09 -1.27 10.04 -39.61 -0.40 -1.67 16 7 C -0.17 -2.93 8.14 -39.38 -0.32 -3.25 16 8 C 0.21 3.70 5.94 -83.76 -0.50 3.20 16 9 N -0.69 -12.86 5.44 -8.45 -0.05 -12.91 16 10 C 0.18 4.04 5.74 -83.83 -0.48 3.56 16 11 C -0.26 -5.98 8.02 -39.08 -0.31 -6.29 16 12 C -0.09 -2.00 10.02 -39.69 -0.40 -2.40 16 13 C -0.18 -4.67 8.70 -38.83 -0.34 -5.00 16 14 C 0.13 3.42 5.57 -106.85 -0.60 2.83 16 15 C -0.46 -12.20 9.04 -37.74 -0.34 -12.54 16 16 H 0.08 1.97 7.92 -52.49 -0.42 1.55 16 17 C 0.08 1.94 5.11 -17.35 -0.09 1.85 16 18 N -0.79 -20.24 11.03 55.55 0.61 -19.63 16 19 Si 0.91 18.50 29.60 -169.99 -5.03 13.46 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 21 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 23 C -0.26 -6.21 9.71 -38.67 -0.38 -6.59 16 24 C -0.19 -2.77 9.57 -39.38 -0.38 -3.15 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.53 7.37 -51.93 -0.38 0.14 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.74 7.87 -51.93 -0.41 0.33 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.51 7.40 -51.93 -0.38 0.13 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.11 1.26 7.09 -52.49 -0.37 0.89 16 33 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 34 H 0.13 2.55 6.70 -52.49 -0.35 2.20 16 35 H 0.40 6.51 8.91 -40.82 -0.36 6.14 16 36 H 0.09 1.95 6.99 -52.49 -0.37 1.58 16 37 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 38 H 0.12 3.09 6.19 -52.49 -0.32 2.76 16 39 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 40 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 41 H 0.11 1.53 7.94 -52.48 -0.42 1.11 16 LS Contribution 337.00 15.07 5.08 5.08 Total: -1.00 -27.21 337.00 -10.25 -37.46 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -5.88 Total: 12.55 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: -4.98 Total: -36.01 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.57 Total: -32.53 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.21 -10.25 -37.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175778493.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.967 kcal (2) G-P(sol) polarization free energy of solvation -27.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds