Wall clock time and date at job start Tue Mar 31 2020 05:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47492 * 2 1 4 4 C 1.50708 * 109.47059 * 119.99975 * 2 1 3 5 5 C 1.38322 * 119.95451 * 299.97799 * 4 2 1 6 6 C 1.38284 * 120.15533 * 179.97438 * 5 4 2 7 7 C 1.38100 * 120.08399 * 359.74502 * 6 5 4 8 8 C 1.38963 * 119.91509 * 0.53104 * 7 6 5 9 9 N 1.39590 * 120.07647 * 179.74446 * 8 7 6 10 10 C 1.38683 * 120.00538 * 13.69619 * 9 8 7 11 11 C 1.38809 * 120.29884 * 253.86726 * 10 9 8 12 12 C 1.38116 * 120.02030 * 180.25698 * 11 10 9 13 13 C 1.38928 * 120.63579 * 359.73183 * 12 11 10 14 14 C 1.36432 * 120.60821 * 359.97438 * 13 12 11 15 15 C 1.40741 * 119.94648 * 0.02562 * 14 13 12 16 16 C 1.41013 * 120.30721 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00103 * 207.43474 * 16 15 14 18 18 C 1.39914 * 120.00092 * 27.42908 * 16 15 14 19 19 N 1.30889 * 119.99987 * 203.71206 * 18 16 15 20 20 Si 1.86794 * 119.99674 * 23.70591 * 18 16 15 21 21 H 1.48507 * 109.47282 * 263.17609 * 20 18 16 22 22 H 1.48501 * 109.47595 * 23.17840 * 20 18 16 23 23 H 1.48504 * 109.47009 * 143.18024 * 20 18 16 24 24 C 1.38057 * 119.96057 * 119.99902 * 4 2 1 25 25 H 1.08993 * 109.47216 * 300.00114 * 1 2 3 26 26 H 1.08994 * 109.47005 * 60.00210 * 1 2 3 27 27 H 1.08998 * 109.47000 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47416 * 239.99562 * 2 1 3 29 29 H 1.09000 * 109.47302 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46988 * 300.00171 * 3 2 1 31 31 H 1.09005 * 109.47147 * 59.99397 * 3 2 1 32 32 H 1.07996 * 119.92549 * 359.97438 * 5 4 2 33 33 H 1.08003 * 119.95968 * 180.02562 * 6 5 4 34 34 H 1.07999 * 120.04731 * 180.24870 * 7 6 5 35 35 H 0.96996 * 119.99487 * 193.68914 * 9 8 7 36 36 H 1.08000 * 119.99105 * 359.97438 * 11 10 9 37 37 H 1.08001 * 119.68631 * 179.75437 * 12 11 10 38 38 H 1.08002 * 119.69660 * 180.02562 * 13 12 11 39 39 H 1.07995 * 120.02509 * 180.02562 * 14 13 12 40 40 H 0.96997 * 119.99765 * 355.04208 * 19 18 16 41 41 H 1.07999 * 120.04156 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6980 -0.2368 2.4864 6 6 2.1562 -0.8857 3.6183 7 6 2.9453 -2.0127 3.4984 8 6 3.2880 -2.4880 2.2384 9 7 4.0898 -3.6237 2.1133 10 6 4.3116 -4.4405 3.2120 11 6 5.5408 -4.4285 3.8568 12 6 5.7571 -5.2482 4.9472 13 6 4.7519 -6.0861 5.4134 14 6 3.5321 -6.1143 4.8029 15 6 3.2844 -5.2894 3.6898 16 6 2.0266 -5.3128 3.0526 17 1 1.9473 -5.0626 2.0050 18 6 0.8815 -5.6602 3.7776 19 7 -0.1690 -6.1317 3.1552 20 14 0.8521 -5.4513 5.6335 21 1 1.1776 -6.7467 6.2827 22 1 1.8550 -4.4316 6.0330 23 1 -0.5000 -5.0097 6.0606 24 6 2.8260 -1.8329 1.1029 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.0776 0.6419 2.5832 33 1 1.8928 -0.5134 4.5973 34 1 3.2995 -2.5214 4.3828 35 1 4.4919 -3.8417 1.2579 36 1 6.3297 -3.7814 3.5030 37 1 6.7169 -5.2374 5.4423 38 1 4.9374 -6.7205 6.2676 39 1 2.7573 -6.7690 5.1735 40 1 -0.1807 -6.1730 2.1862 41 1 3.0872 -2.2016 0.1221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175778890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:32 Heat of formation + Delta-G solvation = 26.450006 kcal Electronic energy + Delta-G solvation = -21660.172844 eV Core-core repulsion = 18696.387423 eV Total energy + Delta-G solvation = -2963.785421 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.34001 -37.99140 -35.60519 -33.79221 -33.68538 -30.27356 -30.11647 -28.92331 -27.25319 -27.01889 -24.68477 -22.81162 -21.84837 -21.44008 -20.44279 -18.98118 -18.16906 -16.51446 -16.45786 -15.39518 -14.94337 -14.51000 -14.42659 -14.00926 -13.87599 -13.35353 -13.32470 -12.97155 -12.74718 -12.63916 -12.24175 -12.14577 -11.89746 -11.65134 -11.30178 -11.13302 -11.05192 -10.94800 -10.68624 -10.46804 -10.38222 -10.15917 -10.02995 -9.51890 -9.39643 -8.97270 -8.13473 -7.78932 -7.74857 -7.33205 -6.58534 -4.54711 2.06509 2.23305 2.56385 2.66396 3.17544 3.34265 3.50981 3.98336 4.33895 4.49648 4.54289 4.97789 5.05314 5.32878 5.37232 5.54530 5.65894 5.71118 5.78260 5.90843 5.93600 5.97158 6.01070 6.06429 6.07716 6.23670 6.31196 6.37110 6.38846 6.53272 6.63762 6.65258 6.91133 7.06255 7.14453 7.19166 7.27591 7.39149 7.52374 7.60452 7.63650 7.78647 7.92131 8.21675 8.41653 8.50388 8.64625 8.87943 9.93546 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.006172 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.219678 B = 4535.554568 C = 5377.364651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.054 4.054 3 C -0.140 4.140 4 C -0.041 4.041 5 C -0.185 4.185 6 C -0.080 4.080 7 C -0.171 4.171 8 C 0.243 3.757 9 N -0.671 5.671 10 C 0.010 3.990 11 C -0.075 4.075 12 C -0.250 4.250 13 C -0.074 4.074 14 C -0.234 4.234 15 C 0.096 3.904 16 C -0.490 4.490 17 H 0.078 0.922 18 C 0.046 3.954 19 N -0.805 5.805 20 Si 1.067 2.933 21 H -0.277 1.277 22 H -0.261 1.261 23 H -0.288 1.288 24 C -0.202 4.202 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.389 0.611 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.287 0.713 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.884 9.420 -2.645 10.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.197 4.197 4 C -0.041 4.041 5 C -0.205 4.205 6 C -0.099 4.099 7 C -0.193 4.193 8 C 0.140 3.860 9 N -0.292 5.292 10 C -0.083 4.083 11 C -0.095 4.095 12 C -0.270 4.270 13 C -0.092 4.092 14 C -0.254 4.254 15 C 0.091 3.909 16 C -0.518 4.518 17 H 0.096 0.904 18 C -0.175 4.175 19 N -0.427 5.427 20 Si 0.893 3.107 21 H -0.204 1.204 22 H -0.185 1.185 23 H -0.215 1.215 24 C -0.225 4.225 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.138 0.862 35 H 0.223 0.777 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.883 9.039 -1.254 9.318 hybrid contribution 0.995 -0.117 -1.819 2.077 sum 2.878 8.922 -3.073 9.866 Atomic orbital electron populations 1.21828 0.94665 1.02100 1.01331 1.20067 0.95730 0.95665 0.95797 1.21825 1.01053 0.95463 1.01401 1.19348 0.96168 0.94547 0.94072 1.20487 1.05717 1.02337 0.91946 1.20794 0.96378 0.94904 0.97811 1.20703 1.03953 0.98240 0.96438 1.17823 0.89230 0.85699 0.93252 1.41160 1.53389 1.23916 1.10778 1.17249 0.95653 0.99138 0.96302 1.20852 0.95891 0.97717 0.95026 1.20186 0.99042 1.05475 1.02258 1.20391 0.93727 0.97351 0.97755 1.20716 0.97426 1.04854 1.02402 1.17921 0.93606 0.88449 0.90915 1.20438 0.92138 1.40553 0.98673 0.90412 1.27275 0.92188 0.89299 1.08709 1.70552 1.32343 1.26670 1.13114 0.83659 0.76224 0.78536 0.72262 1.20406 1.18493 1.21550 1.20369 1.05623 0.99879 0.96600 0.92452 0.93005 0.92471 0.91111 0.92736 0.92991 0.92476 0.87486 0.87052 0.86203 0.77673 0.88867 0.88867 0.88844 0.88007 0.90146 0.87334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.01 37.16 0.33 -1.43 16 2 C -0.05 -0.71 3.09 -91.77 -0.28 -1.00 16 3 C -0.14 -1.57 9.01 37.16 0.33 -1.24 16 4 C -0.04 -0.67 4.78 -104.65 -0.50 -1.17 16 5 C -0.18 -3.06 8.71 -39.53 -0.34 -3.41 16 6 C -0.08 -1.45 10.04 -39.62 -0.40 -1.84 16 7 C -0.17 -3.53 9.25 -39.36 -0.36 -3.89 16 8 C 0.24 4.91 5.99 -83.78 -0.50 4.41 16 9 N -0.67 -13.63 4.74 -8.04 -0.04 -13.66 16 10 C 0.01 0.23 4.51 -83.28 -0.38 -0.15 16 11 C -0.07 -1.56 9.96 -39.41 -0.39 -1.95 16 12 C -0.25 -5.09 10.03 -39.37 -0.40 -5.48 16 13 C -0.07 -1.57 9.96 -39.98 -0.40 -1.96 16 14 C -0.23 -5.53 7.31 -39.29 -0.29 -5.82 16 15 C 0.10 2.36 5.02 -106.63 -0.54 1.82 16 16 C -0.49 -12.83 8.50 -37.90 -0.32 -13.15 16 17 H 0.08 2.16 7.80 -52.49 -0.41 1.75 16 18 C 0.05 1.21 5.33 -17.33 -0.09 1.12 16 19 N -0.81 -21.51 13.66 55.55 0.76 -20.75 16 20 Si 1.07 24.37 25.03 -169.99 -4.25 20.11 16 21 H -0.28 -6.02 6.70 56.52 0.38 -5.64 16 22 H -0.26 -5.91 7.03 56.52 0.40 -5.52 16 23 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.20 -3.65 9.53 -39.37 -0.38 -4.02 16 25 H 0.06 0.70 7.39 -51.93 -0.38 0.32 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.90 7.87 -51.93 -0.41 0.50 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.63 7.38 -51.93 -0.38 0.25 16 32 H 0.11 1.53 7.09 -52.49 -0.37 1.16 16 33 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 34 H 0.12 2.67 7.06 -52.49 -0.37 2.30 16 35 H 0.39 7.04 8.86 -40.82 -0.36 6.67 16 36 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.10 2.40 4.85 -52.49 -0.25 2.15 16 40 H 0.29 7.52 8.73 -40.82 -0.36 7.16 16 41 H 0.11 1.78 7.94 -52.49 -0.42 1.37 16 LS Contribution 334.06 15.07 5.03 5.03 Total: -1.00 -26.72 334.06 -9.32 -36.04 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -5.92 Total: 12.39 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: -4.90 Total: -39.17 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.72 Total: -34.41 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -4.25 Total: 20.11 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -26.72 -9.32 -36.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175778890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.491 kcal (2) G-P(sol) polarization free energy of solvation -26.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds