Wall clock time and date at job start Tue Mar 31 2020 05:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47492 * 2 1 4 4 C 1.50708 * 109.47059 * 119.99975 * 2 1 3 5 5 C 1.38322 * 119.95451 * 299.97799 * 4 2 1 6 6 C 1.38284 * 120.15533 * 179.97438 * 5 4 2 7 7 C 1.38100 * 120.08399 * 359.74502 * 6 5 4 8 8 C 1.38963 * 119.91509 * 0.53104 * 7 6 5 9 9 N 1.39590 * 120.07647 * 179.74446 * 8 7 6 10 10 C 1.38683 * 120.00538 * 13.69619 * 9 8 7 11 11 C 1.38809 * 120.29884 * 253.86726 * 10 9 8 12 12 C 1.38116 * 120.02030 * 180.25698 * 11 10 9 13 13 C 1.38928 * 120.63579 * 359.73183 * 12 11 10 14 14 C 1.36432 * 120.60821 * 359.97438 * 13 12 11 15 15 C 1.40741 * 119.94648 * 0.02562 * 14 13 12 16 16 C 1.41013 * 120.30721 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00103 * 207.43474 * 16 15 14 18 18 C 1.39914 * 120.00092 * 27.42908 * 16 15 14 19 19 N 1.30889 * 119.99987 * 203.71206 * 18 16 15 20 20 Si 1.86794 * 119.99674 * 23.70591 * 18 16 15 21 21 H 1.48507 * 109.47282 * 263.17609 * 20 18 16 22 22 H 1.48501 * 109.47595 * 23.17840 * 20 18 16 23 23 H 1.48504 * 109.47009 * 143.18024 * 20 18 16 24 24 C 1.38057 * 119.96057 * 119.99902 * 4 2 1 25 25 H 1.08993 * 109.47216 * 300.00114 * 1 2 3 26 26 H 1.08994 * 109.47005 * 60.00210 * 1 2 3 27 27 H 1.08998 * 109.47000 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47416 * 239.99562 * 2 1 3 29 29 H 1.09000 * 109.47302 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46988 * 300.00171 * 3 2 1 31 31 H 1.09005 * 109.47147 * 59.99397 * 3 2 1 32 32 H 1.07996 * 119.92549 * 359.97438 * 5 4 2 33 33 H 1.08003 * 119.95968 * 180.02562 * 6 5 4 34 34 H 1.07999 * 120.04731 * 180.24870 * 7 6 5 35 35 H 0.96996 * 119.99487 * 193.68914 * 9 8 7 36 36 H 1.08000 * 119.99105 * 359.97438 * 11 10 9 37 37 H 1.08001 * 119.68631 * 179.75437 * 12 11 10 38 38 H 1.08002 * 119.69660 * 180.02562 * 13 12 11 39 39 H 1.07995 * 120.02509 * 180.02562 * 14 13 12 40 40 H 0.96997 * 119.99765 * 355.04208 * 19 18 16 41 41 H 1.07999 * 120.04156 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6980 -0.2368 2.4864 6 6 2.1562 -0.8857 3.6183 7 6 2.9453 -2.0127 3.4984 8 6 3.2880 -2.4880 2.2384 9 7 4.0898 -3.6237 2.1133 10 6 4.3116 -4.4405 3.2120 11 6 5.5408 -4.4285 3.8568 12 6 5.7571 -5.2482 4.9472 13 6 4.7519 -6.0861 5.4134 14 6 3.5321 -6.1143 4.8029 15 6 3.2844 -5.2894 3.6898 16 6 2.0266 -5.3128 3.0526 17 1 1.9473 -5.0626 2.0050 18 6 0.8815 -5.6602 3.7776 19 7 -0.1690 -6.1317 3.1552 20 14 0.8521 -5.4513 5.6335 21 1 1.1776 -6.7467 6.2827 22 1 1.8550 -4.4316 6.0330 23 1 -0.5000 -5.0097 6.0606 24 6 2.8260 -1.8329 1.1029 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.0776 0.6419 2.5832 33 1 1.8928 -0.5134 4.5973 34 1 3.2995 -2.5214 4.3828 35 1 4.4919 -3.8417 1.2579 36 1 6.3297 -3.7814 3.5030 37 1 6.7169 -5.2374 5.4423 38 1 4.9374 -6.7205 6.2676 39 1 2.7573 -6.7690 5.1735 40 1 -0.1807 -6.1730 2.1862 41 1 3.0872 -2.2016 0.1221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175778890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:31 Heat of formation + Delta-G solvation = 14.520450 kcal Electronic energy + Delta-G solvation = -21660.690148 eV Core-core repulsion = 18696.387423 eV Total energy + Delta-G solvation = -2964.302725 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.84066 -39.58491 -36.97469 -35.66180 -35.09260 -32.08098 -31.62439 -30.36006 -28.83759 -27.94344 -26.50187 -24.15444 -23.30261 -23.16802 -22.01876 -20.39526 -20.05347 -18.11485 -17.89945 -16.86310 -16.48171 -16.22618 -15.94326 -15.72734 -15.12626 -14.78107 -14.58706 -14.36504 -14.33878 -14.20451 -13.92782 -13.43558 -13.22763 -12.96579 -12.76476 -12.74994 -12.39284 -12.33655 -12.20301 -11.99976 -11.80567 -11.57747 -11.45883 -11.32796 -11.07983 -10.70030 -9.65563 -9.53970 -9.45615 -9.24665 -8.14229 -6.49224 0.62721 0.67394 0.86064 0.94530 1.32707 1.52619 1.70269 2.14145 2.62558 2.82306 3.10323 3.49143 3.83215 3.99814 4.22346 4.32262 4.36772 4.42305 4.42982 4.52708 4.66975 4.70928 4.75947 4.84676 4.86817 4.91756 5.01692 5.06773 5.10774 5.17834 5.29157 5.37115 5.40351 5.43422 5.48824 5.60337 5.70502 5.76292 5.85162 5.88025 6.00637 6.13100 6.19259 6.40113 6.57537 6.79784 6.91011 7.19268 7.96902 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.006172 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.219678 B = 4535.554568 C = 5377.364651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.054 4.054 3 C -0.135 4.135 4 C -0.038 4.038 5 C -0.182 4.182 6 C -0.086 4.086 7 C -0.199 4.199 8 C 0.224 3.776 9 N -0.676 5.676 10 C 0.016 3.984 11 C -0.084 4.084 12 C -0.228 4.228 13 C -0.080 4.080 14 C -0.250 4.250 15 C 0.074 3.926 16 C -0.514 4.514 17 H 0.044 0.956 18 C 0.015 3.985 19 N -0.839 5.839 20 Si 1.095 2.905 21 H -0.259 1.259 22 H -0.263 1.263 23 H -0.283 1.283 24 C -0.213 4.213 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.095 0.905 35 H 0.396 0.604 36 H 0.117 0.883 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.276 0.724 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.344 11.174 -1.958 12.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.073 4.073 3 C -0.192 4.192 4 C -0.039 4.039 5 C -0.202 4.202 6 C -0.105 4.105 7 C -0.222 4.222 8 C 0.122 3.878 9 N -0.299 5.299 10 C -0.078 4.078 11 C -0.104 4.104 12 C -0.247 4.247 13 C -0.098 4.098 14 C -0.269 4.269 15 C 0.070 3.930 16 C -0.543 4.543 17 H 0.062 0.938 18 C -0.199 4.199 19 N -0.462 5.462 20 Si 0.917 3.083 21 H -0.184 1.184 22 H -0.187 1.187 23 H -0.210 1.210 24 C -0.236 4.236 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.113 0.887 35 H 0.232 0.768 36 H 0.135 0.865 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.115 0.885 40 H 0.087 0.913 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.353 10.798 -0.578 11.322 hybrid contribution 0.789 -0.549 -2.056 2.270 sum 4.142 10.249 -2.634 11.364 Atomic orbital electron populations 1.21821 0.93950 1.01175 1.02803 1.20152 0.96219 0.96770 0.94139 1.21790 1.00846 0.93864 1.02736 1.19814 0.94682 0.93739 0.95674 1.20833 1.05162 1.02799 0.91416 1.21095 0.95646 0.94182 0.99537 1.20662 1.06040 0.99737 0.95713 1.18018 0.89904 0.85991 0.93925 1.41145 1.54007 1.24049 1.10748 1.17509 0.95708 0.98289 0.96336 1.21188 0.95829 0.98260 0.95154 1.20715 1.00096 1.03025 1.00899 1.20786 0.92708 0.97784 0.98523 1.20869 0.98644 1.04889 1.02518 1.18153 0.93680 0.89315 0.91854 1.20192 0.93438 1.43331 0.97329 0.93783 1.28134 0.91841 0.88716 1.11235 1.70625 1.33302 1.29914 1.12381 0.83317 0.76332 0.79218 0.69456 1.18421 1.18739 1.20959 1.20630 1.05978 1.00492 0.96492 0.92077 0.90496 0.94587 0.90803 0.93060 0.90776 0.92063 0.84644 0.85053 0.88669 0.76806 0.86487 0.85166 0.85406 0.88498 0.91319 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.01 71.98 0.65 -2.56 16 2 C -0.05 -1.32 3.09 -11.54 -0.04 -1.36 16 3 C -0.14 -2.61 9.01 71.98 0.65 -1.96 16 4 C -0.04 -1.22 4.78 -19.88 -0.10 -1.32 16 5 C -0.18 -5.78 8.71 22.30 0.19 -5.59 16 6 C -0.09 -3.07 10.04 22.25 0.22 -2.85 16 7 C -0.20 -8.38 9.25 22.41 0.21 -8.17 16 8 C 0.22 9.24 5.99 38.26 0.23 9.47 16 9 N -0.68 -28.05 4.74 -179.36 -0.85 -28.90 16 10 C 0.02 0.70 4.51 39.02 0.18 0.88 16 11 C -0.08 -3.34 9.96 22.38 0.22 -3.11 16 12 C -0.23 -8.45 10.03 22.41 0.22 -8.23 16 13 C -0.08 -3.16 9.96 22.01 0.22 -2.94 16 14 C -0.25 -11.64 7.31 22.46 0.16 -11.47 16 15 C 0.07 3.73 5.02 -21.17 -0.11 3.62 16 16 C -0.51 -28.29 8.50 23.36 0.20 -28.09 16 17 H 0.04 2.64 7.80 -2.91 -0.02 2.62 16 18 C 0.02 0.83 5.33 85.24 0.45 1.29 16 19 N -0.84 -47.20 13.66 21.83 0.30 -46.90 16 20 Si 1.10 50.09 25.03 68.60 1.72 51.81 16 21 H -0.26 -10.91 6.70 99.48 0.67 -10.24 16 22 H -0.26 -11.93 7.03 99.48 0.70 -11.23 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 C -0.21 -7.77 9.53 22.41 0.21 -7.55 16 25 H 0.06 1.34 7.39 -2.39 -0.02 1.32 16 26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.76 7.87 -2.38 -0.02 1.74 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.14 7.38 -2.38 -0.02 1.12 16 32 H 0.14 3.49 7.09 -2.91 -0.02 3.47 16 33 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 34 H 0.10 4.39 7.06 -2.91 -0.02 4.37 16 35 H 0.40 14.70 8.86 -92.71 -0.82 13.87 16 36 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 37 H 0.13 3.93 8.06 -2.91 -0.02 3.90 16 38 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 39 H 0.10 4.55 4.85 -2.91 -0.01 4.54 16 40 H 0.28 15.54 8.73 -92.71 -0.81 14.73 16 41 H 0.12 3.94 7.94 -2.91 -0.02 3.92 16 Total: -1.00 -60.08 334.06 5.07 -55.02 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: 0.12 Total: 38.93 kcal Atomic # 6 Polarization: -73.74 SS G_CDS: 3.79 Total: -69.95 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -0.55 Total: -75.81 kcal Atomic # 14 Polarization: 50.09 SS G_CDS: 1.72 Total: 51.81 kcal Total: -60.08 5.07 -55.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175778890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.536 kcal (2) G-P(sol) polarization free energy of solvation -60.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds