Wall clock time and date at job start Tue Mar 31 2020 05:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46950 * 2 1 4 4 H 1.08999 * 109.47407 * 305.28290 * 3 2 1 5 5 N 1.46900 * 109.46816 * 65.28148 * 3 2 1 6 6 C 1.46903 * 110.99892 * 202.32491 * 5 3 2 7 7 C 1.52997 * 109.47084 * 174.80435 * 6 5 3 8 8 H 1.09003 * 109.47432 * 59.99903 * 7 6 5 9 9 O 1.42897 * 109.47171 * 299.99919 * 7 6 5 10 10 C 1.50700 * 109.47171 * 179.97438 * 7 6 5 11 11 H 1.08001 * 119.99720 * 0.02562 * 10 7 6 12 12 C 1.37873 * 120.00194 * 179.72289 * 10 7 6 13 13 N 1.31520 * 119.99938 * 0.27620 * 12 10 7 14 14 Si 1.86805 * 120.00239 * 180.27906 * 12 10 7 15 15 H 1.48494 * 109.47076 * 59.99907 * 14 12 10 16 16 H 1.48497 * 109.47047 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46640 * 300.00254 * 14 12 10 18 18 C 1.50699 * 109.46974 * 185.27595 * 3 2 1 19 19 C 1.38266 * 119.99221 * 279.72604 * 18 3 2 20 20 C 1.38226 * 120.04934 * 179.76626 * 19 18 3 21 21 C 1.38218 * 120.02652 * 0.50870 * 20 19 18 22 22 C 1.50699 * 120.01010 * 179.71607 * 21 20 19 23 23 C 1.38437 * 119.97604 * 359.74882 * 21 20 19 24 24 F 1.35094 * 120.02667 * 179.97438 * 23 21 20 25 25 C 1.38178 * 119.98294 * 100.00197 * 18 3 2 26 26 H 1.09000 * 109.46873 * 294.80713 * 1 2 3 27 27 H 1.08992 * 109.47311 * 54.81632 * 1 2 3 28 28 H 1.09006 * 109.46852 * 174.81689 * 1 2 3 29 29 H 1.08999 * 109.46785 * 240.00327 * 2 1 3 30 30 H 1.09001 * 109.47410 * 120.00164 * 2 1 3 31 31 H 1.00900 * 111.00011 * 78.37347 * 5 3 2 32 32 H 1.08994 * 109.47260 * 54.80178 * 6 5 3 33 33 H 1.09004 * 109.46678 * 294.80062 * 6 5 3 34 34 H 0.96700 * 114.00210 * 300.00438 * 9 7 6 35 35 H 0.97000 * 119.99982 * 179.97438 * 13 12 10 36 36 H 1.08000 * 119.97277 * 0.02562 * 19 18 3 37 37 H 1.08001 * 119.98401 * 180.25886 * 20 19 18 38 38 H 1.08994 * 109.47766 * 270.02495 * 22 21 20 39 39 H 1.09005 * 109.47079 * 30.03625 * 22 21 20 40 40 H 1.09007 * 109.46538 * 150.02385 * 22 21 20 41 41 H 1.08003 * 120.01369 * 0.02562 * 25 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6015 1.9830 -0.8389 5 7 1.6571 2.0972 1.2581 6 6 1.6391 3.5583 1.1070 7 6 1.1130 4.1976 2.3936 8 1 1.7623 3.9264 3.2261 9 8 -0.2122 3.7290 2.6510 10 6 1.0951 5.6965 2.2389 11 1 1.4256 6.1479 1.3151 12 6 0.6511 6.4912 3.2743 13 7 0.2482 5.9414 4.3991 14 14 0.6216 8.3489 3.0797 15 1 -0.2619 8.7135 1.9433 16 1 0.1064 8.9691 4.3267 17 1 1.9975 8.8406 2.8146 18 6 3.5413 1.4445 -0.1306 19 6 4.3319 1.2071 0.9785 20 6 5.7090 1.2039 0.8591 21 6 6.2974 1.4485 -0.3674 22 6 7.7989 1.4512 -0.4959 23 6 5.5070 1.6916 -1.4776 24 9 6.0810 1.9314 -2.6768 25 6 4.1273 1.6894 -1.3578 26 1 -0.3633 0.4312 0.9328 27 1 -0.3633 0.5921 -0.8398 28 1 -0.3633 -1.0235 -0.0928 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.2685 1.8190 2.0111 32 1 0.9899 3.8295 0.2747 33 1 2.6500 3.9157 0.9108 34 1 -0.8455 3.9355 1.9500 35 1 -0.0639 6.5006 5.1278 36 1 3.8731 1.0198 1.9381 37 1 6.3255 1.0141 1.7253 38 1 8.1771 2.4579 -0.3181 39 1 8.2275 0.7673 0.2367 40 1 8.0782 1.1301 -1.4995 41 1 3.5097 1.8797 -2.2231 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192910391.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:45 Heat of formation + Delta-G solvation = -87.885018 kcal Electronic energy + Delta-G solvation = -22071.259478 eV Core-core repulsion = 18671.746894 eV Total energy + Delta-G solvation = -3399.512584 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.94596 -39.71869 -36.98885 -35.35603 -32.50064 -32.14437 -31.94720 -30.57744 -28.45745 -27.08767 -24.88720 -23.64733 -22.89872 -21.80138 -20.51954 -20.13405 -17.27029 -16.97519 -16.51330 -15.92905 -15.74071 -14.97162 -14.72655 -14.62849 -14.41900 -13.87796 -13.61735 -13.52088 -13.45667 -13.34011 -12.97062 -12.70461 -12.43521 -12.22847 -11.81146 -11.69012 -11.47619 -11.31951 -10.98546 -10.90670 -10.86437 -10.68318 -10.60910 -10.58726 -10.04474 -9.00855 -8.91911 -8.56574 -8.54216 -8.11818 -7.78115 -5.98919 -4.17191 1.09765 1.16168 3.29561 3.34881 3.36699 3.50098 4.15930 4.36847 4.53723 4.60656 4.71247 4.83977 5.04275 5.17544 5.28321 5.29368 5.36385 5.40730 5.46770 5.56900 5.67326 5.78114 5.90793 6.01714 6.01910 6.07847 6.16201 6.19314 6.26825 6.27720 6.33617 6.44711 6.56872 6.67843 6.85891 6.86449 7.54682 7.69709 7.85196 7.92356 8.22310 8.86468 9.47956 9.64393 11.05149 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015370 B = 0.004539 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.266701 B = 6166.814196 C = 7241.764057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 C 0.121 3.879 4 H 0.084 0.916 5 N -0.664 5.664 6 C 0.034 3.966 7 C 0.238 3.762 8 H 0.050 0.950 9 O -0.554 6.554 10 C -0.574 4.574 11 H 0.053 0.947 12 C 0.081 3.919 13 N -0.859 5.859 14 Si 0.888 3.112 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.277 1.277 18 C -0.079 4.079 19 C -0.121 4.121 20 C -0.088 4.088 21 C -0.128 4.128 22 C -0.112 4.112 23 C 0.095 3.905 24 F -0.142 7.142 25 C -0.145 4.145 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.336 0.664 32 H 0.060 0.940 33 H 0.022 0.978 34 H 0.342 0.658 35 H 0.260 0.740 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.514 -12.012 -9.753 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.140 4.140 3 C 0.011 3.989 4 H 0.102 0.898 5 N -0.294 5.294 6 C -0.095 4.095 7 C 0.179 3.821 8 H 0.068 0.932 9 O -0.356 6.356 10 C -0.613 4.613 11 H 0.071 0.929 12 C -0.125 4.125 13 N -0.494 5.494 14 Si 0.715 3.285 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.203 1.203 18 C -0.082 4.082 19 C -0.139 4.139 20 C -0.106 4.106 21 C -0.129 4.129 22 C -0.168 4.168 23 C 0.076 3.924 24 F -0.121 7.121 25 C -0.164 4.164 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.156 0.844 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.186 0.814 35 H 0.070 0.930 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.058 -12.257 -9.140 17.771 hybrid contribution 0.954 1.694 -0.924 2.152 sum 10.011 -10.563 -10.063 17.694 Atomic orbital electron populations 1.21646 0.94823 1.00234 1.03243 1.21458 0.96895 0.94450 1.01244 1.20794 0.86812 0.96309 0.95032 0.89808 1.60753 1.56073 1.08744 1.03830 1.22936 0.98904 0.85278 1.02370 1.19244 0.82048 0.90910 0.89853 0.93200 1.86552 1.20196 1.81272 1.47545 1.21607 1.46729 0.92194 1.00732 0.92873 1.25008 0.94172 0.98355 0.95007 1.70071 1.40440 1.35049 1.03869 0.86755 0.78411 0.85806 0.77499 1.20146 1.21174 1.20257 1.20804 0.98374 0.96584 0.92395 1.21056 0.93451 1.00504 0.98906 1.20888 0.94760 0.98762 0.96172 1.19894 0.96577 1.03632 0.92841 1.20698 0.90478 1.02746 1.02914 1.17533 0.91205 1.03095 0.80615 1.91457 1.85117 1.92009 1.43479 1.21022 0.92631 1.03780 0.99002 0.90694 0.93398 0.93836 0.92553 0.91962 0.84421 0.92179 0.95946 0.81448 0.92969 0.85133 0.85085 0.90901 0.91072 0.91448 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.74 37.16 0.36 -1.40 16 2 C -0.10 -1.24 5.59 -26.73 -0.15 -1.39 16 3 C 0.12 1.67 2.21 -68.86 -0.15 1.52 16 4 H 0.08 1.19 7.62 -51.93 -0.40 0.79 16 5 N -0.66 -11.04 5.61 -107.95 -0.61 -11.65 16 6 C 0.03 0.68 5.10 -3.82 -0.02 0.66 16 7 C 0.24 5.92 3.08 -27.88 -0.09 5.83 16 8 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 9 O -0.55 -14.19 12.59 -35.23 -0.44 -14.64 16 10 C -0.57 -15.72 8.76 -34.44 -0.30 -16.02 16 11 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 12 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 13 N -0.86 -25.37 12.83 55.43 0.71 -24.66 16 14 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 C -0.08 -1.06 4.65 -104.63 -0.49 -1.55 16 19 C -0.12 -1.53 9.15 -39.58 -0.36 -1.89 16 20 C -0.09 -1.02 9.70 -39.59 -0.38 -1.40 16 21 C -0.13 -1.54 5.89 -104.56 -0.62 -2.15 16 22 C -0.11 -1.05 9.84 36.01 0.35 -0.69 16 23 C 0.09 1.25 7.24 -39.42 -0.29 0.97 16 24 F -0.14 -1.90 16.48 2.25 0.04 -1.86 16 25 C -0.14 -1.91 9.65 -39.51 -0.38 -2.29 16 26 H 0.07 1.09 7.91 -51.93 -0.41 0.68 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.34 5.50 6.46 -39.29 -0.25 5.25 16 32 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 33 H 0.02 0.46 8.00 -51.93 -0.42 0.04 16 34 H 0.34 7.96 9.04 45.56 0.41 8.37 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.13 1.56 6.49 -52.49 -0.34 1.22 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 40 H 0.07 0.61 7.64 -51.92 -0.40 0.22 16 41 H 0.13 1.57 8.04 -52.48 -0.42 1.14 16 LS Contribution 344.54 15.07 5.19 5.19 Total: -1.00 -30.08 344.54 -8.29 -38.36 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -5.56 Total: 10.69 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -2.60 Total: -17.63 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.11 Total: -36.31 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.44 Total: -14.64 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.08 -8.29 -38.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192910391.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.521 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds