Wall clock time and date at job start Tue Mar 31 2020 05:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47608 * 2 1 4 4 C 1.52992 * 109.47109 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47342 * 179.97438 * 4 3 2 6 6 C 1.36940 * 119.99757 * 272.72332 * 5 4 3 7 7 H 1.08007 * 119.99936 * 176.61382 * 6 5 4 8 8 C 1.38807 * 120.00400 * 356.61080 * 6 5 4 9 9 N 1.31625 * 119.99880 * 29.97560 * 8 6 5 10 10 Si 1.86801 * 120.00381 * 209.97917 * 8 6 5 11 11 H 1.48497 * 109.47131 * 84.98910 * 10 8 6 12 12 H 1.48495 * 109.47175 * 204.99245 * 10 8 6 13 13 H 1.48499 * 109.46792 * 324.98961 * 10 8 6 14 14 C 1.46500 * 120.00202 * 92.71584 * 5 4 3 15 15 C 1.50701 * 109.46993 * 270.00561 * 14 5 4 16 16 C 1.38257 * 119.93693 * 270.01512 * 15 14 5 17 17 C 1.38184 * 120.09943 * 180.02562 * 16 15 14 18 18 C 1.38661 * 119.96301 * 359.97438 * 17 16 15 19 19 O 1.35956 * 120.05926 * 180.27624 * 18 17 16 20 20 C 1.42902 * 117.00207 * 359.71612 * 19 18 17 21 21 C 1.38910 * 119.87955 * 359.97438 * 18 17 16 22 22 F 1.35096 * 120.04817 * 180.02562 * 21 18 17 23 23 C 1.38254 * 119.93604 * 90.00214 * 15 14 5 24 24 H 1.09003 * 109.46910 * 59.99665 * 1 2 3 25 25 H 1.08995 * 109.48009 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46827 * 300.00181 * 1 2 3 27 27 H 1.08997 * 109.46524 * 239.99627 * 2 1 3 28 28 H 1.09003 * 109.46910 * 120.00335 * 2 1 3 29 29 H 1.08995 * 109.46609 * 59.99958 * 3 2 1 30 30 H 1.08999 * 109.46419 * 300.00440 * 3 2 1 31 31 H 1.09004 * 109.47040 * 59.99994 * 4 3 2 32 32 H 1.09003 * 109.47196 * 300.00204 * 4 3 2 33 33 H 0.97001 * 120.00194 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.46957 * 150.00095 * 14 5 4 35 35 H 1.09005 * 109.46741 * 30.00661 * 14 5 4 36 36 H 1.08005 * 119.95019 * 0.02884 * 16 15 14 37 37 H 1.07997 * 120.01798 * 180.02562 * 17 16 15 38 38 H 1.08996 * 109.47044 * 300.00590 * 20 19 18 39 39 H 1.09004 * 109.46802 * 60.00255 * 20 19 18 40 40 H 1.08995 * 109.47442 * 180.02562 * 20 19 18 41 41 H 1.08000 * 119.98565 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 7 4.0586 2.8235 0.0000 6 6 4.2342 3.4870 -1.1849 7 1 4.5419 4.5223 -1.1836 8 6 4.0171 2.8291 -2.3877 9 7 3.1327 1.8565 -2.4555 10 14 4.9798 3.3238 -3.9102 11 1 6.2852 2.6158 -3.9221 12 1 4.2075 2.9584 -5.1247 13 1 5.2122 4.7904 -3.8939 14 6 4.3590 3.4948 1.2670 15 6 3.1239 4.1981 1.7680 16 6 2.8776 5.5074 1.3982 17 6 1.7465 6.1557 1.8561 18 6 0.8566 5.4923 2.6871 19 8 -0.2598 6.1265 3.1342 20 6 -0.4504 7.4787 2.7132 21 6 1.1047 4.1765 3.0570 22 9 0.2397 3.5267 3.8662 23 6 2.2391 3.5328 2.5962 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9562 0.8900 30 1 1.6767 1.9562 -0.8900 31 1 3.9337 0.9283 -0.8891 32 1 3.9330 0.9286 0.8909 33 1 2.9812 1.3965 -3.2959 34 1 5.1547 4.2235 1.1123 35 1 4.6802 2.7567 2.0020 36 1 3.5704 6.0242 0.7505 37 1 1.5552 7.1783 1.5661 38 1 0.3879 8.0867 3.0533 39 1 -0.5083 7.5157 1.6253 40 1 -1.3759 7.8652 3.1400 41 1 2.4334 2.5099 2.8831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203791611.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:53 Heat of formation + Delta-G solvation = -38.859817 kcal Electronic energy + Delta-G solvation = -22849.417786 eV Core-core repulsion = 19452.031095 eV Total energy + Delta-G solvation = -3397.386692 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.37486 -39.69128 -37.67634 -35.89002 -33.45036 -31.80344 -30.31581 -29.79820 -28.09092 -27.20948 -25.28728 -23.48124 -22.36087 -21.53705 -20.33011 -19.81426 -18.01524 -16.86279 -16.40318 -16.26501 -15.88242 -15.06435 -14.75213 -14.52049 -14.15751 -13.95169 -13.89892 -13.56425 -13.33369 -12.97337 -12.57049 -12.07458 -11.99395 -11.76156 -11.51878 -11.47631 -11.31251 -11.01948 -10.84285 -10.75728 -10.63671 -10.43650 -10.07986 -9.99903 -9.84489 -9.60695 -9.20309 -8.46272 -8.21017 -7.69379 -6.97111 -5.82055 -3.04138 1.58372 1.69926 3.34878 3.38450 3.46706 3.48113 4.00162 4.51441 4.61207 4.98059 5.12453 5.16453 5.25299 5.38866 5.44005 5.54469 5.61419 5.74505 5.87526 5.89160 5.97079 6.08498 6.11288 6.34610 6.50313 6.51830 6.54001 6.60538 6.65377 6.75594 6.83208 6.99001 7.04697 7.12923 7.27556 7.33878 7.58154 7.68962 7.84201 8.17602 8.30872 9.20662 9.83120 10.27399 11.20469 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015125 B = 0.006128 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.830415 B = 4567.810994 C = 5522.250341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C -0.122 4.122 4 C 0.167 3.833 5 N -0.588 5.588 6 C -0.253 4.253 7 H 0.076 0.924 8 C 0.005 3.995 9 N -0.882 5.882 10 Si 0.888 3.112 11 H -0.289 1.289 12 H -0.295 1.295 13 H -0.283 1.283 14 C 0.185 3.815 15 C -0.086 4.086 16 C -0.076 4.076 17 C -0.182 4.182 18 C 0.072 3.928 19 O -0.317 6.317 20 C 0.030 3.970 21 C 0.063 3.937 22 F -0.142 7.142 23 C -0.106 4.106 24 H 0.051 0.949 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.036 0.964 29 H 0.024 0.976 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.004 0.996 33 H 0.252 0.748 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.109 5.538 8.819 10.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.161 4.161 4 C 0.042 3.958 5 N -0.307 5.307 6 C -0.382 4.382 7 H 0.094 0.906 8 C -0.193 4.193 9 N -0.526 5.526 10 Si 0.717 3.283 11 H -0.216 1.216 12 H -0.221 1.221 13 H -0.209 1.209 14 C 0.057 3.943 15 C -0.091 4.091 16 C -0.095 4.095 17 C -0.201 4.201 18 C 0.026 3.974 19 O -0.231 6.231 20 C -0.066 4.066 21 C 0.043 3.957 22 F -0.121 7.121 23 C -0.126 4.126 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.023 0.977 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.305 5.319 8.788 10.791 hybrid contribution -0.013 0.416 -0.969 1.055 sum -3.319 5.734 7.819 10.248 Atomic orbital electron populations 1.21731 0.97615 0.99718 1.01143 1.21400 0.94206 0.99556 1.00048 1.22237 0.98504 0.93790 1.01590 1.21123 0.92220 0.84117 0.98322 1.44496 1.75310 1.10635 1.00236 1.19216 1.39629 0.96092 0.83217 0.90599 1.24700 0.98672 0.98693 0.97243 1.70264 1.30307 1.26860 1.25173 0.86510 0.80870 0.77897 0.82982 1.21598 1.22136 1.20864 1.19866 0.91239 0.94877 0.88317 1.21069 1.00455 0.93521 0.94008 1.20863 0.96331 0.94484 0.97812 1.21039 0.96572 1.00755 1.01719 1.18842 0.88631 0.91591 0.98316 1.86072 1.39722 1.27272 1.70073 1.23003 1.02207 0.80956 1.00385 1.16976 0.91534 0.88908 0.98266 1.91439 1.68718 1.80993 1.70939 1.20830 0.92768 1.00193 0.98823 0.93030 0.94324 0.93819 0.92325 0.94514 0.95730 0.88528 0.89242 0.97739 0.93750 0.92208 0.93084 0.85517 0.85390 0.92830 0.92653 0.88567 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.91 37.16 0.37 -2.17 16 2 C -0.11 -2.21 5.93 -26.73 -0.16 -2.37 16 3 C -0.12 -2.71 4.99 -26.73 -0.13 -2.84 16 4 C 0.17 3.82 4.99 -4.05 -0.02 3.80 16 5 N -0.59 -13.53 2.52 -174.61 -0.44 -13.97 16 6 C -0.25 -6.41 9.68 -15.06 -0.15 -6.56 16 7 H 0.08 1.89 7.99 -52.48 -0.42 1.47 16 8 C 0.00 0.13 4.97 -17.43 -0.09 0.04 16 9 N -0.88 -23.44 8.38 55.49 0.46 -22.98 16 10 Si 0.89 20.75 29.65 -169.99 -5.04 15.71 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.18 3.50 5.83 -5.19 -0.03 3.47 16 15 C -0.09 -1.57 5.41 -104.61 -0.57 -2.14 16 16 C -0.08 -1.29 9.69 -39.59 -0.38 -1.68 16 17 C -0.18 -2.86 9.04 -39.44 -0.36 -3.22 16 18 C 0.07 1.23 6.69 -39.18 -0.26 0.97 16 19 O -0.32 -5.01 10.36 -19.60 -0.20 -5.21 16 20 C 0.03 0.32 9.81 101.05 0.99 1.31 16 21 C 0.06 1.15 7.31 -39.30 -0.29 0.86 16 22 F -0.14 -2.65 17.11 2.25 0.04 -2.61 16 23 C -0.11 -1.91 7.64 -39.54 -0.30 -2.21 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.02 0.53 5.67 -51.93 -0.29 0.24 16 30 H 0.10 2.52 6.31 -51.93 -0.33 2.19 16 31 H 0.09 2.29 5.81 -51.93 -0.30 1.99 16 32 H 0.00 0.09 7.86 -51.93 -0.41 -0.32 16 33 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.06 1.08 7.98 -51.93 -0.41 0.66 16 35 H 0.05 0.89 7.82 -51.93 -0.41 0.48 16 36 H 0.13 2.05 8.06 -52.48 -0.42 1.62 16 37 H 0.13 1.64 6.30 -52.49 -0.33 1.31 16 38 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16 39 H 0.05 0.56 7.65 -51.93 -0.40 0.17 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.13 2.29 7.88 -52.49 -0.41 1.87 16 LS Contribution 335.40 15.07 5.05 5.05 Total: -1.00 -27.82 335.40 -7.70 -35.53 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.21 Total: 1.20 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -1.37 Total: -12.72 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.03 Total: -36.95 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.20 Total: -5.21 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.04 Total: 15.71 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.82 -7.70 -35.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203791611.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.334 kcal (2) G-P(sol) polarization free energy of solvation -27.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds