Wall clock time and date at job start Tue Mar 31 2020 05:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46996 * 2 1 4 4 N 1.46900 * 109.47174 * 174.87406 * 3 2 1 5 5 C 1.46896 * 111.00037 * 199.71171 * 4 3 2 6 6 C 1.50702 * 109.47045 * 66.04902 * 5 4 3 7 7 H 1.07993 * 120.00276 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99758 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00252 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99624 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47385 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47165 * 120.00563 * 10 8 6 13 13 H 1.48507 * 109.46902 * 240.00252 * 10 8 6 14 14 C 1.46903 * 110.99574 * 75.75973 * 4 3 2 15 15 C 1.50705 * 109.46994 * 199.75824 * 14 4 3 16 16 C 1.38258 * 119.94049 * 264.44194 * 15 14 4 17 17 C 1.38178 * 120.09609 * 180.02562 * 16 15 14 18 18 C 1.38666 * 119.96763 * 359.97438 * 17 16 15 19 19 O 1.35956 * 120.05771 * 180.27481 * 18 17 16 20 20 C 1.42896 * 117.00558 * 359.72135 * 19 18 17 21 21 C 1.38901 * 119.87691 * 0.02562 * 18 17 16 22 22 F 1.35103 * 120.05070 * 180.02562 * 21 18 17 23 23 C 1.38265 * 119.93189 * 84.41455 * 15 14 4 24 24 H 1.09005 * 109.47217 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47247 * 299.99631 * 1 2 3 26 26 H 1.08999 * 109.47415 * 60.00149 * 1 2 3 27 27 H 1.09000 * 109.47247 * 240.00369 * 2 1 3 28 28 H 1.08999 * 109.47415 * 119.99851 * 2 1 3 29 29 H 1.09003 * 109.46722 * 54.87843 * 3 2 1 30 30 H 1.08992 * 109.47351 * 294.87988 * 3 2 1 31 31 H 1.09000 * 109.47296 * 186.04923 * 5 4 3 32 32 H 1.09006 * 109.47600 * 306.04692 * 5 4 3 33 33 H 0.96992 * 119.99870 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47203 * 79.76839 * 14 4 3 35 35 H 1.08999 * 109.47147 * 319.76192 * 14 4 3 36 36 H 1.07998 * 119.95299 * 0.02562 * 16 15 14 37 37 H 1.08001 * 120.01869 * 179.97438 * 17 16 15 38 38 H 1.09000 * 109.46992 * 60.00106 * 20 19 18 39 39 H 1.09001 * 109.47249 * 180.02562 * 20 19 18 40 40 H 1.08996 * 109.47372 * 300.00407 * 20 19 18 41 41 H 1.07994 * 119.98293 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5037 1.4444 0.1237 5 6 3.9909 2.7493 0.5903 6 6 3.5118 2.9901 1.9987 7 1 2.9063 2.2478 2.4975 8 6 3.8473 4.1576 2.6509 9 7 4.5850 5.0614 2.0438 10 14 3.2528 4.4563 4.3964 11 1 2.4451 3.2955 4.8498 12 1 4.4224 4.6263 5.2954 13 1 2.4187 5.6845 4.4319 14 6 4.1398 1.0683 -1.1459 15 6 5.5517 0.6111 -0.8843 16 6 6.6010 1.5019 -1.0153 17 6 7.8969 1.0860 -0.7767 18 6 8.1458 -0.2265 -0.4049 19 8 9.4196 -0.6362 -0.1643 20 6 10.4544 0.3369 -0.3195 21 6 7.0907 -1.1204 -0.2737 22 9 7.3292 -2.3998 0.0889 23 6 5.7953 -0.6984 -0.5132 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6036 1.9821 0.8406 30 1 1.7534 1.9292 -0.9322 31 1 5.0807 2.7585 0.5707 32 1 3.6092 3.5344 -0.0625 33 1 4.8207 5.8828 2.5025 34 1 4.1547 1.9295 -1.8139 35 1 3.5756 0.2588 -1.6091 36 1 6.4074 2.5243 -1.3045 37 1 8.7156 1.7828 -0.8798 38 1 10.2792 1.1661 0.3659 39 1 11.4190 -0.1201 -0.0984 40 1 10.4545 0.7068 -1.3447 41 1 4.9740 -1.3922 -0.4116 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203793489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:21 Heat of formation + Delta-G solvation = -63.819245 kcal Electronic energy + Delta-G solvation = -22168.684839 eV Core-core repulsion = 18770.215825 eV Total energy + Delta-G solvation = -3398.469014 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.49249 -39.85086 -38.02738 -36.41076 -33.12289 -32.37996 -30.54601 -30.31410 -27.75771 -27.09951 -25.57194 -23.92182 -22.52354 -21.53350 -21.04538 -19.76541 -18.10995 -16.71938 -16.67587 -16.20699 -15.97529 -15.06419 -14.88111 -14.63090 -14.57424 -14.50456 -14.05030 -13.75838 -13.56683 -13.06519 -12.76236 -12.30989 -12.06967 -12.01020 -11.90713 -11.55226 -11.45760 -11.23833 -11.05079 -10.90130 -10.83710 -10.68549 -10.63395 -10.31271 -10.02591 -9.72255 -9.18021 -8.62504 -8.43496 -7.86321 -7.26313 -6.03788 -4.03709 1.43819 1.51591 3.24874 3.30204 3.38029 3.42968 3.81342 4.43107 4.47176 4.88595 4.93564 5.02532 5.13518 5.22938 5.32580 5.37575 5.43042 5.45589 5.56049 5.58088 5.71725 5.73447 5.85428 6.00204 6.10842 6.15498 6.25419 6.27536 6.36860 6.44597 6.45580 6.71781 6.82402 6.87540 6.88693 7.29749 7.33082 7.44225 7.80614 8.08971 8.20115 8.53807 9.04073 9.60179 11.07183 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012251 B = 0.005625 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.057607 B = 4976.488897 C = 6443.582107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.061 3.939 4 N -0.532 5.532 5 C 0.190 3.810 6 C -0.504 4.504 7 H 0.064 0.936 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.092 3.908 15 C -0.064 4.064 16 C -0.072 4.072 17 C -0.180 4.180 18 C 0.084 3.916 19 O -0.315 6.315 20 C 0.028 3.972 21 C 0.062 3.938 22 F -0.139 7.139 23 C -0.095 4.095 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.018 0.982 31 H 0.036 0.964 32 H -0.011 1.011 33 H 0.260 0.740 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.145 -8.706 -8.229 12.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.067 4.067 4 N -0.256 5.256 5 C 0.065 3.935 6 C -0.542 4.542 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.722 3.278 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.211 1.211 14 C -0.036 4.036 15 C -0.065 4.065 16 C -0.091 4.091 17 C -0.199 4.199 18 C 0.038 3.962 19 O -0.229 6.229 20 C -0.067 4.067 21 C 0.042 3.958 22 F -0.118 7.118 23 C -0.114 4.114 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.007 0.993 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.430 -9.104 -7.772 12.763 hybrid contribution -0.235 1.064 0.479 1.190 sum 4.195 -8.040 -7.293 11.638 Atomic orbital electron populations 1.21729 0.96550 1.00797 1.01598 1.21554 0.94510 0.97937 1.01739 1.22052 0.88764 0.95403 1.00468 1.62120 1.04464 1.34481 1.24562 1.19808 0.96334 0.82249 0.95114 1.21200 1.32000 1.02495 0.98545 0.91824 1.24962 0.95363 0.96086 0.98135 1.69955 1.37794 1.08745 1.37367 0.86494 0.78540 0.78049 0.84677 1.19635 1.21078 1.21146 1.20993 0.90773 0.99219 0.92645 1.19603 0.95811 0.92211 0.98916 1.20994 0.91214 0.99610 0.97301 1.21050 0.98635 0.93955 1.06246 1.18920 0.83921 0.93096 1.00219 1.86083 1.12920 1.38906 1.84986 1.23056 0.89490 0.92837 1.01362 1.16906 0.92120 0.78984 1.07787 1.91456 1.95187 1.35329 1.89834 1.20786 0.93831 0.97151 0.99682 0.93336 0.92652 0.93308 0.93126 0.91366 0.89454 0.96344 0.94589 0.99303 0.93075 0.94467 0.90993 0.85078 0.84856 0.92347 0.88375 0.92677 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.81 5.98 -26.73 -0.16 -1.97 16 3 C 0.06 1.13 4.79 -3.82 -0.02 1.12 16 4 N -0.53 -10.94 4.35 -237.51 -1.03 -11.97 16 5 C 0.19 4.76 4.54 -4.98 -0.02 4.74 16 6 C -0.50 -13.88 8.23 -34.44 -0.28 -14.17 16 7 H 0.06 1.76 7.31 -52.49 -0.38 1.37 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 10 Si 0.89 21.57 29.54 -169.99 -5.02 16.54 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.09 1.57 4.94 -4.97 -0.02 1.55 16 15 C -0.06 -1.09 5.04 -104.60 -0.53 -1.62 16 16 C -0.07 -1.20 8.39 -39.60 -0.33 -1.53 16 17 C -0.18 -2.73 9.04 -39.45 -0.36 -3.09 16 18 C 0.08 1.36 6.69 -39.18 -0.26 1.10 16 19 O -0.32 -4.72 10.36 -19.60 -0.20 -4.93 16 20 C 0.03 0.28 9.81 101.05 0.99 1.27 16 21 C 0.06 1.04 7.31 -39.30 -0.29 0.76 16 22 F -0.14 -2.40 17.11 2.25 0.04 -2.36 16 23 C -0.10 -1.56 9.70 -39.54 -0.38 -1.94 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.70 6.89 -51.93 -0.36 0.34 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.09 1.82 6.58 -51.93 -0.34 1.48 16 30 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 31 H 0.04 0.96 6.33 -51.93 -0.33 0.63 16 32 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.04 0.63 7.90 -51.93 -0.41 0.22 16 35 H 0.07 1.07 6.54 -51.93 -0.34 0.73 16 36 H 0.13 2.12 7.98 -52.49 -0.42 1.70 16 37 H 0.13 1.67 6.30 -52.49 -0.33 1.34 16 38 H 0.06 0.58 7.65 -51.93 -0.40 0.19 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.48 7.67 -51.93 -0.40 0.08 16 41 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 340.15 15.07 5.13 5.13 Total: -1.00 -30.48 340.15 -7.97 -38.45 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -6.22 Total: -1.51 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -1.39 Total: -13.88 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.30 Total: -37.44 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.20 Total: -4.93 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.48 -7.97 -38.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203793489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.371 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds