Wall clock time and date at job start Tue Mar 31 2020 05:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53002 * 109.46986 * 2 1 4 4 C 1.52997 * 109.47079 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46942 * 180.02562 * 4 3 2 6 6 C 1.36930 * 119.99973 * 275.65403 * 5 4 3 7 7 H 1.08002 * 119.99774 * 34.07487 * 6 5 4 8 8 C 1.38810 * 120.00366 * 214.06653 * 6 5 4 9 9 N 1.31625 * 119.99719 * 22.82883 * 8 6 5 10 10 Si 1.86795 * 120.00552 * 202.83631 * 8 6 5 11 11 H 1.48500 * 109.47161 * 59.99794 * 10 8 6 12 12 H 1.48497 * 109.47593 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47029 * 300.00171 * 10 8 6 14 14 C 1.46498 * 119.99890 * 95.65892 * 5 4 3 15 15 C 1.50697 * 109.47170 * 269.99852 * 14 5 4 16 16 C 1.38262 * 119.95178 * 90.00137 * 15 14 5 17 17 C 1.38262 * 120.12667 * 179.97438 * 16 15 14 18 18 C 1.38328 * 120.02523 * 0.02562 * 17 16 15 19 19 F 1.35101 * 120.04372 * 179.97438 * 18 17 16 20 20 C 1.38913 * 119.91106 * 359.97438 * 18 17 16 21 21 O 1.35949 * 120.06704 * 179.97438 * 20 18 17 22 22 C 1.42898 * 117.00179 * 180.02562 * 21 20 18 23 23 C 1.38182 * 119.95092 * 270.25333 * 15 14 5 24 24 H 1.08997 * 109.46851 * 299.99600 * 1 2 3 25 25 H 1.08996 * 109.46987 * 59.99690 * 1 2 3 26 26 H 1.08995 * 109.46716 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46851 * 240.00400 * 2 1 3 28 28 H 1.08996 * 109.46987 * 120.00310 * 2 1 3 29 29 H 1.09003 * 109.46753 * 59.99836 * 3 2 1 30 30 H 1.08997 * 109.47048 * 300.00247 * 3 2 1 31 31 H 1.09004 * 109.46968 * 60.00040 * 4 3 2 32 32 H 1.08996 * 109.46962 * 300.00352 * 4 3 2 33 33 H 0.96998 * 119.99968 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.47311 * 149.99249 * 14 5 4 35 35 H 1.09005 * 109.47149 * 30.00062 * 14 5 4 36 36 H 1.07998 * 119.94055 * 359.97438 * 16 15 14 37 37 H 1.07992 * 119.98448 * 179.97438 * 17 16 15 38 38 H 1.09004 * 109.47146 * 180.02562 * 22 21 20 39 39 H 1.08997 * 109.47375 * 60.00148 * 22 21 20 40 40 H 1.09004 * 109.46666 * 299.99812 * 22 21 20 41 41 H 1.07995 * 120.01471 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4426 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.1769 3.5086 -1.1786 7 1 3.4725 3.3327 -1.9781 8 6 5.2022 4.4290 -1.3469 9 7 6.2922 4.3412 -0.6143 10 14 5.0352 5.7923 -2.6129 11 1 3.8523 6.6287 -2.2865 12 1 6.2571 6.6359 -2.5962 13 1 4.8628 5.1964 -3.9622 14 6 4.4199 3.4723 1.2641 15 6 3.2108 4.1659 1.8368 16 6 2.3666 3.4856 2.6948 17 6 1.2565 4.1186 3.2228 18 6 0.9880 5.4348 2.8928 19 9 -0.0969 6.0536 3.4080 20 6 1.8353 6.1196 2.0309 21 8 1.5741 7.4131 1.7040 22 6 2.4881 8.0541 0.8120 23 6 2.9446 5.4792 1.4996 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9338 0.9286 -0.8892 32 1 3.9330 0.9288 0.8908 33 1 7.0089 4.9841 -0.7322 34 1 5.2075 4.2041 1.0844 35 1 4.7760 2.7213 1.9694 36 1 2.5745 2.4578 2.9532 37 1 0.5984 3.5849 3.8924 38 1 2.1643 9.0798 0.6351 39 1 2.5133 7.5125 -0.1336 40 1 3.4843 8.0592 1.2545 41 1 3.6029 6.0082 0.8264 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204558823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:05 Heat of formation + Delta-G solvation = -53.984197 kcal Electronic energy + Delta-G solvation = -22919.175705 eV Core-core repulsion = 19521.133170 eV Total energy + Delta-G solvation = -3398.042534 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.32034 -39.56386 -37.48247 -35.95978 -34.11571 -31.52360 -30.60272 -29.76406 -27.94523 -27.15715 -25.39437 -23.84652 -22.05998 -21.57509 -20.61444 -20.17451 -17.67720 -16.90743 -16.38587 -16.27299 -15.72706 -14.96073 -14.89599 -14.65835 -14.17484 -13.99917 -13.73362 -13.65280 -13.56899 -13.28557 -12.50224 -12.33968 -12.04521 -11.89970 -11.73914 -11.31059 -11.28199 -11.05579 -10.87016 -10.81692 -10.73542 -10.54947 -10.38228 -10.35523 -10.09386 -9.99105 -9.69197 -8.60317 -8.26066 -7.63866 -6.73261 -5.91810 -3.44285 1.69871 1.79192 3.24794 3.32757 3.34431 3.50931 4.10678 4.38205 4.73862 5.15123 5.17917 5.28147 5.32373 5.37961 5.46635 5.56948 5.60902 5.68140 5.68621 5.77060 5.85284 5.95999 6.02083 6.14587 6.29397 6.33601 6.35933 6.44736 6.55975 6.58404 6.60770 6.67007 6.81937 6.95612 7.10384 7.15847 7.23875 7.57415 7.70945 7.72671 8.37857 9.05216 9.68901 10.25046 11.07951 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.009992 B = 0.009147 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.553548 B = 3060.418272 C = 5019.184704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.142 4.142 4 C 0.148 3.852 5 N -0.574 5.574 6 C -0.250 4.250 7 H 0.061 0.939 8 C 0.009 3.991 9 N -0.884 5.884 10 Si 0.888 3.112 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.279 1.279 14 C 0.167 3.833 15 C -0.039 4.039 16 C -0.129 4.129 17 C -0.123 4.123 18 C 0.039 3.961 19 F -0.146 7.146 20 C 0.088 3.912 21 O -0.318 6.318 22 C 0.026 3.974 23 C -0.159 4.159 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.036 0.964 33 H 0.257 0.743 34 H 0.110 0.890 35 H 0.038 0.962 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.096 0.904 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.740 -0.880 5.031 8.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.182 4.182 4 C 0.022 3.978 5 N -0.292 5.292 6 C -0.380 4.380 7 H 0.079 0.921 8 C -0.191 4.191 9 N -0.526 5.526 10 Si 0.717 3.283 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.205 1.205 14 C 0.041 3.959 15 C -0.043 4.043 16 C -0.148 4.148 17 C -0.142 4.142 18 C 0.019 3.981 19 F -0.125 7.125 20 C 0.043 3.957 21 O -0.232 6.232 22 C -0.069 4.069 23 C -0.179 4.179 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.128 0.872 35 H 0.057 0.943 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.114 0.886 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.712 -0.661 5.059 8.431 hybrid contribution -0.226 0.925 -0.811 1.250 sum -6.938 0.263 4.248 8.140 Atomic orbital electron populations 1.21761 0.96761 1.00543 1.01586 1.21495 0.95040 0.98321 1.01152 1.22277 0.99345 0.94551 1.02002 1.20921 0.91324 0.86606 0.98945 1.43730 1.75359 1.08208 1.01910 1.19005 1.07346 1.18667 0.92937 0.92087 1.25044 0.94229 1.01473 0.98330 1.69960 1.04521 1.35942 1.42185 0.86589 0.77038 0.82632 0.81999 1.20885 1.21413 1.20514 1.20177 0.92551 0.97178 0.85982 1.21187 0.98988 0.92466 0.91625 1.20811 0.94760 0.99883 0.99394 1.20831 0.99248 0.92204 1.01910 1.16828 0.87463 0.91946 1.01847 1.91417 1.52342 1.82982 1.85767 1.19072 0.95311 0.84487 0.96854 1.86028 1.51127 1.22709 1.63322 1.23079 0.93229 0.97496 0.93073 1.21132 0.97444 0.96595 1.02700 0.93068 0.93087 0.93586 0.92600 0.92716 0.92232 0.92601 0.93658 0.94591 0.93311 0.87247 0.94338 0.85813 0.85228 0.88583 0.92111 0.92501 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.12 -1.73 5.93 -26.72 -0.16 -1.89 16 3 C -0.14 -2.47 5.51 -26.73 -0.15 -2.62 16 4 C 0.15 2.92 5.72 -4.04 -0.02 2.90 16 5 N -0.57 -13.19 2.44 -174.61 -0.43 -13.62 16 6 C -0.25 -6.37 9.48 -15.06 -0.14 -6.51 16 7 H 0.06 1.59 7.93 -52.49 -0.42 1.17 16 8 C 0.01 0.24 4.95 -17.43 -0.09 0.15 16 9 N -0.88 -23.55 11.31 55.49 0.63 -22.93 16 10 Si 0.89 20.20 29.61 -169.99 -5.03 15.17 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 C 0.17 3.63 5.45 -5.20 -0.03 3.60 16 15 C -0.04 -0.76 5.44 -104.63 -0.57 -1.33 16 16 C -0.13 -2.20 7.86 -39.56 -0.31 -2.51 16 17 C -0.12 -2.00 10.02 -39.54 -0.40 -2.40 16 18 C 0.04 0.72 7.31 -39.30 -0.29 0.43 16 19 F -0.15 -2.68 17.11 2.25 0.04 -2.65 16 20 C 0.09 1.69 6.69 -39.17 -0.26 1.43 16 21 O -0.32 -5.82 10.36 -19.58 -0.20 -6.02 16 22 C 0.03 0.40 9.81 101.05 0.99 1.39 16 23 C -0.16 -3.17 8.69 -39.44 -0.34 -3.51 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.06 6.12 -51.93 -0.32 0.74 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 32 H 0.04 0.66 7.83 -51.93 -0.41 0.25 16 33 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 34 H 0.11 2.69 5.26 -51.93 -0.27 2.42 16 35 H 0.04 0.78 7.80 -51.93 -0.40 0.38 16 36 H 0.12 1.88 8.02 -52.49 -0.42 1.46 16 37 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.06 0.98 7.65 -51.93 -0.40 0.59 16 40 H 0.06 0.81 7.67 -51.93 -0.40 0.41 16 41 H 0.14 2.81 6.30 -52.49 -0.33 2.48 16 LS Contribution 340.99 15.07 5.14 5.14 Total: -1.00 -27.21 340.99 -7.56 -34.77 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.30 Total: 2.54 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -1.40 Total: -12.41 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.20 Total: -36.54 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.20 Total: -6.02 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.21 -7.56 -34.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204558823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.218 kcal (2) G-P(sol) polarization free energy of solvation -27.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds