Wall clock time and date at job start Tue Mar 31 2020 05:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53002 * 109.46986 * 2 1 4 4 C 1.52997 * 109.47079 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46942 * 180.02562 * 4 3 2 6 6 C 1.36930 * 119.99973 * 275.65403 * 5 4 3 7 7 H 1.08002 * 119.99774 * 34.07487 * 6 5 4 8 8 C 1.38810 * 120.00366 * 214.06653 * 6 5 4 9 9 N 1.31625 * 119.99719 * 22.82883 * 8 6 5 10 10 Si 1.86795 * 120.00552 * 202.83631 * 8 6 5 11 11 H 1.48500 * 109.47161 * 59.99794 * 10 8 6 12 12 H 1.48497 * 109.47593 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47029 * 300.00171 * 10 8 6 14 14 C 1.46498 * 119.99890 * 95.65892 * 5 4 3 15 15 C 1.50697 * 109.47170 * 269.99852 * 14 5 4 16 16 C 1.38262 * 119.95178 * 90.00137 * 15 14 5 17 17 C 1.38262 * 120.12667 * 179.97438 * 16 15 14 18 18 C 1.38328 * 120.02523 * 0.02562 * 17 16 15 19 19 F 1.35101 * 120.04372 * 179.97438 * 18 17 16 20 20 C 1.38913 * 119.91106 * 359.97438 * 18 17 16 21 21 O 1.35949 * 120.06704 * 179.97438 * 20 18 17 22 22 C 1.42898 * 117.00179 * 180.02562 * 21 20 18 23 23 C 1.38182 * 119.95092 * 270.25333 * 15 14 5 24 24 H 1.08997 * 109.46851 * 299.99600 * 1 2 3 25 25 H 1.08996 * 109.46987 * 59.99690 * 1 2 3 26 26 H 1.08995 * 109.46716 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46851 * 240.00400 * 2 1 3 28 28 H 1.08996 * 109.46987 * 120.00310 * 2 1 3 29 29 H 1.09003 * 109.46753 * 59.99836 * 3 2 1 30 30 H 1.08997 * 109.47048 * 300.00247 * 3 2 1 31 31 H 1.09004 * 109.46968 * 60.00040 * 4 3 2 32 32 H 1.08996 * 109.46962 * 300.00352 * 4 3 2 33 33 H 0.96998 * 119.99968 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.47311 * 149.99249 * 14 5 4 35 35 H 1.09005 * 109.47149 * 30.00062 * 14 5 4 36 36 H 1.07998 * 119.94055 * 359.97438 * 16 15 14 37 37 H 1.07992 * 119.98448 * 179.97438 * 17 16 15 38 38 H 1.09004 * 109.47146 * 180.02562 * 22 21 20 39 39 H 1.08997 * 109.47375 * 60.00148 * 22 21 20 40 40 H 1.09004 * 109.46666 * 299.99812 * 22 21 20 41 41 H 1.07995 * 120.01471 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4426 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.1769 3.5086 -1.1786 7 1 3.4725 3.3327 -1.9781 8 6 5.2022 4.4290 -1.3469 9 7 6.2922 4.3412 -0.6143 10 14 5.0352 5.7923 -2.6129 11 1 3.8523 6.6287 -2.2865 12 1 6.2571 6.6359 -2.5962 13 1 4.8628 5.1964 -3.9622 14 6 4.4199 3.4723 1.2641 15 6 3.2108 4.1659 1.8368 16 6 2.3666 3.4856 2.6948 17 6 1.2565 4.1186 3.2228 18 6 0.9880 5.4348 2.8928 19 9 -0.0969 6.0536 3.4080 20 6 1.8353 6.1196 2.0309 21 8 1.5741 7.4131 1.7040 22 6 2.4881 8.0541 0.8120 23 6 2.9446 5.4792 1.4996 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9338 0.9286 -0.8892 32 1 3.9330 0.9288 0.8908 33 1 7.0089 4.9841 -0.7322 34 1 5.2075 4.2041 1.0844 35 1 4.7760 2.7213 1.9694 36 1 2.5745 2.4578 2.9532 37 1 0.5984 3.5849 3.8924 38 1 2.1643 9.0798 0.6351 39 1 2.5133 7.5125 -0.1336 40 1 3.4843 8.0592 1.2545 41 1 3.6029 6.0082 0.8264 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204558823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:04 Heat of formation + Delta-G solvation = -66.344444 kcal Electronic energy + Delta-G solvation = -22919.711685 eV Core-core repulsion = 19521.133170 eV Total energy + Delta-G solvation = -3398.578515 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.75106 -40.98971 -38.96899 -37.48684 -35.54932 -33.32080 -32.06986 -31.17892 -29.38404 -28.54484 -27.09503 -25.36496 -23.45571 -23.01221 -22.06148 -21.67913 -19.18557 -18.57485 -17.90374 -17.73024 -17.12692 -16.79423 -16.23858 -16.04190 -15.58068 -15.55699 -15.26272 -15.16265 -15.07765 -14.53858 -13.95744 -13.76191 -13.41560 -13.33323 -13.08985 -12.98789 -12.82807 -12.62063 -12.36322 -12.35111 -12.18883 -12.04706 -11.84973 -11.78059 -11.73524 -11.56426 -11.17082 -10.50640 -9.71889 -9.07889 -8.59702 -7.84114 -5.40810 0.25081 0.36855 1.40886 1.44586 1.50309 2.19389 2.47351 2.67620 3.22000 3.30514 3.80234 3.83092 3.95884 4.21372 4.23152 4.26086 4.33288 4.36153 4.41230 4.47286 4.58161 4.60817 4.63384 4.83128 4.94615 5.03591 5.09084 5.10879 5.12634 5.18854 5.23234 5.33516 5.45203 5.55310 5.57592 5.68957 5.72941 5.73759 5.91179 6.29635 6.46046 7.15206 7.85785 8.35954 9.11220 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.009992 B = 0.009147 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.553548 B = 3060.418272 C = 5019.184704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.128 4.128 4 C 0.146 3.854 5 N -0.588 5.588 6 C -0.256 4.256 7 H 0.048 0.952 8 C -0.027 4.027 9 N -0.909 5.909 10 Si 0.935 3.065 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.280 1.280 14 C 0.172 3.828 15 C -0.050 4.050 16 C -0.121 4.121 17 C -0.106 4.106 18 C 0.030 3.970 19 F -0.146 7.146 20 C 0.078 3.922 21 O -0.329 6.329 22 C 0.024 3.976 23 C -0.173 4.173 24 H 0.054 0.946 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.029 0.971 31 H 0.030 0.970 32 H 0.053 0.947 33 H 0.253 0.747 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.149 0.851 37 H 0.168 0.832 38 H 0.131 0.869 39 H 0.044 0.956 40 H 0.059 0.941 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.384 -1.702 6.234 10.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.167 4.167 4 C 0.021 3.979 5 N -0.307 5.307 6 C -0.386 4.386 7 H 0.066 0.934 8 C -0.225 4.225 9 N -0.553 5.553 10 Si 0.763 3.237 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.206 1.206 14 C 0.047 3.953 15 C -0.053 4.053 16 C -0.140 4.140 17 C -0.124 4.124 18 C 0.010 3.990 19 F -0.125 7.125 20 C 0.032 3.968 21 O -0.243 6.243 22 C -0.071 4.071 23 C -0.192 4.192 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.167 0.833 37 H 0.186 0.814 38 H 0.149 0.851 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.378 -1.488 6.268 10.569 hybrid contribution 0.264 1.166 -1.145 1.656 sum -8.114 -0.322 5.123 9.601 Atomic orbital electron populations 1.21733 0.95405 1.01872 1.01381 1.21452 0.96176 0.95864 1.01993 1.22083 0.97335 0.96673 1.00652 1.21035 0.92842 0.85049 0.99008 1.43901 1.75765 1.09455 1.01618 1.19058 1.06743 1.19111 0.93704 0.93435 1.25521 0.94060 1.02958 0.99970 1.70061 1.05021 1.36501 1.43677 0.85853 0.76970 0.80712 0.80155 1.20266 1.21465 1.20643 1.19981 0.92790 0.96754 0.85818 1.21008 0.98809 0.92544 0.92983 1.20993 0.94115 1.00741 0.98117 1.21180 0.98907 0.91235 1.01092 1.17113 0.87353 0.92753 1.01776 1.91417 1.52253 1.83148 1.85693 1.19205 0.95331 0.84989 0.97238 1.86012 1.52024 1.22429 1.63835 1.23272 0.93323 0.98740 0.91741 1.21007 0.97944 0.97036 1.03257 0.92729 0.93881 0.91506 0.92601 0.91064 0.92197 0.95244 0.95172 0.92847 0.93735 0.90308 0.93267 0.83336 0.81428 0.85069 0.93764 0.92233 0.86489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.91 71.99 0.71 -2.61 16 2 C -0.12 -3.03 5.93 30.60 0.18 -2.84 16 3 C -0.13 -4.29 5.51 30.59 0.17 -4.13 16 4 C 0.15 5.67 5.72 86.38 0.49 6.16 16 5 N -0.59 -27.29 2.44 -706.35 -1.73 -29.01 16 6 C -0.26 -13.35 9.48 84.03 0.80 -12.55 16 7 H 0.05 2.56 7.93 -2.91 -0.02 2.54 16 8 C -0.03 -1.44 4.95 84.86 0.42 -1.02 16 9 N -0.91 -49.77 11.31 21.65 0.24 -49.53 16 10 Si 0.93 42.38 29.61 68.60 2.03 44.42 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 C 0.17 7.53 5.45 85.63 0.47 8.00 16 15 C -0.05 -1.94 5.44 -19.87 -0.11 -2.05 16 16 C -0.12 -3.79 7.86 22.28 0.18 -3.62 16 17 C -0.11 -3.08 10.02 22.30 0.22 -2.86 16 18 C 0.03 1.04 7.31 22.45 0.16 1.20 16 19 F -0.15 -5.05 17.11 44.97 0.77 -4.28 16 20 C 0.08 2.95 6.69 22.53 0.15 3.10 16 21 O -0.33 -11.85 10.36 -92.98 -0.96 -12.82 16 22 C 0.02 0.70 9.81 113.37 1.11 1.82 16 23 C -0.17 -6.94 8.69 22.36 0.19 -6.74 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 2.00 6.12 -2.39 -0.01 1.98 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.03 1.24 8.09 -2.38 -0.02 1.22 16 32 H 0.05 1.87 7.83 -2.39 -0.02 1.85 16 33 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 34 H 0.08 3.99 5.26 -2.39 -0.01 3.98 16 35 H 0.05 1.98 7.80 -2.38 -0.02 1.96 16 36 H 0.15 3.93 8.02 -2.91 -0.02 3.91 16 37 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 38 H 0.13 2.89 8.14 -2.38 -0.02 2.88 16 39 H 0.04 1.45 7.65 -2.39 -0.02 1.43 16 40 H 0.06 1.72 7.67 -2.38 -0.02 1.70 16 41 H 0.12 5.06 6.30 -2.91 -0.02 5.05 16 Total: -1.00 -59.17 340.99 6.52 -52.65 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 1.01 Total: 16.69 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 5.15 Total: -18.13 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -1.48 Total: -78.54 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.96 Total: -12.82 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.77 Total: -4.28 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.42 kcal Total: -59.17 6.52 -52.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204558823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.693 kcal (2) G-P(sol) polarization free energy of solvation -59.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds