Wall clock time and date at job start Tue Mar 31 2020 05:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46848 * 2 1 4 4 N 1.46898 * 109.46993 * 174.88133 * 3 2 1 5 5 C 1.46909 * 110.99919 * 199.70540 * 4 3 2 6 6 C 1.50697 * 109.47013 * 66.04471 * 5 4 3 7 7 H 1.08006 * 120.00164 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99842 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99914 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99904 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47128 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.46826 * 119.99775 * 10 8 6 13 13 H 1.48498 * 109.46875 * 239.99612 * 10 8 6 14 14 C 1.46897 * 111.00266 * 75.75012 * 4 3 2 15 15 C 1.50701 * 109.47214 * 199.76799 * 14 4 3 16 16 C 1.38262 * 119.95419 * 84.40301 * 15 14 4 17 17 C 1.38257 * 120.12736 * 180.02562 * 16 15 14 18 18 C 1.38331 * 120.02932 * 0.02562 * 17 16 15 19 19 F 1.35103 * 120.04534 * 179.97438 * 18 17 16 20 20 C 1.38908 * 119.90760 * 359.97438 * 18 17 16 21 21 O 1.35955 * 120.06608 * 179.97438 * 20 18 17 22 22 C 1.42892 * 117.00094 * 180.02562 * 21 20 18 23 23 C 1.38183 * 119.95459 * 264.66210 * 15 14 4 24 24 H 1.09001 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46906 * 299.99845 * 1 2 3 26 26 H 1.08999 * 109.47580 * 60.00266 * 1 2 3 27 27 H 1.08993 * 109.46987 * 239.99750 * 2 1 3 28 28 H 1.09004 * 109.47137 * 119.99817 * 2 1 3 29 29 H 1.09001 * 109.47603 * 54.87840 * 3 2 1 30 30 H 1.09002 * 109.47138 * 294.87502 * 3 2 1 31 31 H 1.08997 * 109.46577 * 186.04098 * 5 4 3 32 32 H 1.08995 * 109.46940 * 306.04619 * 5 4 3 33 33 H 0.97001 * 119.99564 * 180.02562 * 9 8 6 34 34 H 1.08996 * 109.47151 * 79.77305 * 14 4 3 35 35 H 1.08996 * 109.46986 * 319.76594 * 14 4 3 36 36 H 1.08005 * 119.93606 * 359.97438 * 16 15 14 37 37 H 1.08001 * 119.98412 * 180.02562 * 17 16 15 38 38 H 1.09005 * 109.47101 * 299.99726 * 22 21 20 39 39 H 1.09001 * 109.47436 * 180.02562 * 22 21 20 40 40 H 1.09002 * 109.47574 * 59.99789 * 22 21 20 41 41 H 1.08005 * 120.01245 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5037 1.4444 0.1236 5 6 3.9910 2.7494 0.5901 6 6 3.5120 2.9903 1.9984 7 1 2.9058 2.2484 2.4970 8 6 3.8467 4.1583 2.6501 9 7 4.5844 5.0620 2.0428 10 14 3.2523 4.4572 4.3957 11 1 2.4446 3.2965 4.8491 12 1 4.4220 4.6283 5.2943 13 1 2.4173 5.6847 4.4308 14 6 4.1398 1.0681 -1.1460 15 6 5.5517 0.6107 -0.8844 16 6 5.7955 -0.6986 -0.5130 17 6 7.0894 -1.1219 -0.2716 18 6 8.1433 -0.2353 -0.4008 19 9 9.4077 -0.6484 -0.1644 20 6 7.8998 1.0804 -0.7738 21 8 8.9332 1.9547 -0.9013 22 6 8.6081 3.2914 -1.2876 23 6 6.6002 1.5018 -1.0108 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6037 1.9822 0.8405 30 1 1.7535 1.9292 -0.9323 31 1 5.0808 2.7585 0.5704 32 1 3.6092 3.5343 -0.0628 33 1 4.8201 5.8835 2.5015 34 1 4.1548 1.9292 -1.8141 35 1 3.5756 0.2586 -1.6091 36 1 4.9737 -1.3917 -0.4104 37 1 7.2773 -2.1452 0.0180 38 1 8.1136 3.2789 -2.2589 39 1 9.5213 3.8831 -1.3528 40 1 7.9415 3.7321 -0.5462 41 1 6.4079 2.5252 -1.2973 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204561588.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:31 Heat of formation + Delta-G solvation = -64.562574 kcal Electronic energy + Delta-G solvation = -22366.791415 eV Core-core repulsion = 18968.290168 eV Total energy + Delta-G solvation = -3398.501247 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.48679 -39.81976 -37.86226 -36.49269 -33.18023 -32.49109 -30.64767 -30.01517 -27.69203 -26.93922 -25.76423 -23.96617 -22.28858 -21.66027 -21.10787 -19.83921 -17.77068 -16.81030 -16.68045 -16.27776 -15.87833 -15.08926 -14.78385 -14.63823 -14.60315 -14.27087 -14.14192 -13.81458 -13.63878 -12.99733 -12.68348 -12.39547 -12.03852 -11.95577 -11.79839 -11.56814 -11.45264 -11.18783 -11.07275 -10.88063 -10.82525 -10.73140 -10.64170 -10.33799 -10.05608 -9.77321 -9.19999 -8.55560 -8.45070 -7.85988 -7.31291 -6.06619 -4.06523 1.41128 1.57863 3.28707 3.36648 3.37141 3.41101 3.82802 4.40961 4.52769 4.86608 4.97753 5.10951 5.29204 5.30020 5.36505 5.41406 5.43167 5.49605 5.54247 5.68760 5.72221 5.77799 5.89505 5.94312 6.07632 6.20708 6.23458 6.27023 6.31488 6.41255 6.47004 6.67934 6.79612 6.85440 6.92663 7.25748 7.28892 7.51906 7.77403 8.05265 8.16114 8.50018 9.00984 9.57544 11.04451 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011653 B = 0.006198 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.203166 B = 4516.866078 C = 6034.890313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.061 3.939 4 N -0.531 5.531 5 C 0.191 3.809 6 C -0.504 4.504 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.088 3.912 15 C -0.028 4.028 16 C -0.109 4.109 17 C -0.121 4.121 18 C 0.055 3.945 19 F -0.141 7.141 20 C 0.095 3.905 21 O -0.315 6.315 22 C 0.025 3.975 23 C -0.164 4.164 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.018 0.982 31 H 0.035 0.965 32 H -0.012 1.012 33 H 0.260 0.740 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.054 0.946 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.205 -8.561 -8.463 12.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.067 4.067 4 N -0.255 5.255 5 C 0.066 3.934 6 C -0.543 4.543 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.040 4.040 15 C -0.028 4.028 16 C -0.127 4.127 17 C -0.140 4.140 18 C 0.035 3.965 19 F -0.119 7.119 20 C 0.049 3.951 21 O -0.228 6.228 22 C -0.070 4.070 23 C -0.183 4.183 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.036 0.964 31 H 0.053 0.947 32 H 0.006 0.994 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.072 0.928 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.659 -8.754 -8.044 12.004 hybrid contribution -0.363 1.161 0.426 1.289 sum 1.296 -7.593 -7.618 10.834 Atomic orbital electron populations 1.21732 0.96539 1.00814 1.01614 1.21551 0.94514 0.97885 1.01743 1.22059 0.88690 0.95465 1.00490 1.62114 1.04498 1.34483 1.24394 1.19802 0.96262 0.82221 0.95153 1.21189 1.32064 1.02519 0.98533 0.91794 1.24961 0.95338 0.96059 0.98175 1.69949 1.37758 1.08752 1.37394 0.86484 0.78550 0.78052 0.84621 1.19633 1.21026 1.21138 1.21049 0.90952 0.99277 0.92736 1.19698 0.94998 0.92804 0.95347 1.20714 0.95538 0.95971 1.00519 1.20894 0.91661 0.99350 1.02054 1.16919 0.79908 0.90866 1.08760 1.91449 1.37320 1.90490 1.92680 1.18931 0.87839 0.88971 0.99385 1.86062 1.31492 1.21067 1.84209 1.23124 1.03120 0.80562 1.00168 1.21114 0.90519 1.00930 1.05775 0.93314 0.92650 0.93303 0.93111 0.91335 0.89416 0.96355 0.94713 0.99375 0.93053 0.94689 0.90768 0.85058 0.84545 0.92751 0.88316 0.91436 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.12 -1.75 5.98 -26.73 -0.16 -1.91 16 3 C 0.06 1.11 4.79 -3.83 -0.02 1.09 16 4 N -0.53 -10.77 4.34 -237.52 -1.03 -11.80 16 5 C 0.19 4.75 4.54 -4.97 -0.02 4.72 16 6 C -0.50 -13.81 8.23 -34.44 -0.28 -14.09 16 7 H 0.06 1.75 7.31 -52.48 -0.38 1.37 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 10 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.09 1.49 4.94 -4.98 -0.02 1.46 16 15 C -0.03 -0.46 5.04 -104.63 -0.53 -0.99 16 16 C -0.11 -1.64 9.72 -39.57 -0.38 -2.02 16 17 C -0.12 -1.78 10.02 -39.54 -0.40 -2.18 16 18 C 0.06 0.94 7.31 -39.30 -0.29 0.65 16 19 F -0.14 -2.42 17.11 2.25 0.04 -2.38 16 20 C 0.09 1.66 6.69 -39.18 -0.26 1.40 16 21 O -0.31 -5.35 10.36 -19.60 -0.20 -5.55 16 22 C 0.03 0.34 9.81 101.05 0.99 1.33 16 23 C -0.16 -2.85 7.38 -39.45 -0.29 -3.14 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.68 6.89 -51.93 -0.36 0.32 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.80 6.58 -51.93 -0.34 1.46 16 30 H 0.02 0.32 8.00 -51.93 -0.42 -0.09 16 31 H 0.03 0.92 6.31 -51.93 -0.33 0.60 16 32 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 34 H 0.03 0.60 7.90 -51.93 -0.41 0.19 16 35 H 0.07 1.08 6.54 -51.93 -0.34 0.74 16 36 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 37 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 38 H 0.05 0.64 7.67 -51.93 -0.40 0.24 16 39 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.02 7.65 -51.93 -0.40 0.62 16 41 H 0.14 2.32 6.22 -52.48 -0.33 2.00 16 LS Contribution 340.12 15.07 5.13 5.13 Total: -1.00 -30.14 340.12 -7.96 -38.11 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.21 Total: -0.96 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -1.39 Total: -13.71 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.30 Total: -37.08 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.20 Total: -5.55 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.14 -7.96 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204561588.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.455 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds