Wall clock time and date at job start Tue Mar 31 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00413 * 2 1 4 4 C 1.46905 * 110.99515 * 123.95274 * 2 1 3 5 5 C 1.50692 * 109.47421 * 66.04579 * 4 2 1 6 6 C 1.38386 * 119.85965 * 89.99861 * 5 4 2 7 7 C 1.37935 * 120.14693 * 180.02562 * 6 5 4 8 8 C 1.39603 * 119.85625 * 359.97221 * 7 6 5 9 9 C 1.47981 * 120.14676 * 180.02562 * 8 7 6 10 10 C 1.39943 * 119.87879 * 359.73218 * 9 8 7 11 11 C 1.36262 * 120.12004 * 179.75974 * 10 9 8 12 12 C 1.40936 * 119.87285 * 0.51094 * 11 10 9 13 13 C 1.41023 * 120.11202 * 179.72267 * 12 11 10 14 14 H 1.08009 * 119.99850 * 204.69487 * 13 12 11 15 15 C 1.40016 * 120.00639 * 24.69064 * 13 12 11 16 16 N 1.30795 * 119.99316 * 17.94348 * 15 13 12 17 17 Si 1.86798 * 120.00142 * 197.94263 * 15 13 12 18 18 H 1.48496 * 109.47126 * 60.00007 * 17 15 13 19 19 H 1.48496 * 109.46905 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47072 * 299.99992 * 17 15 13 21 21 C 1.40927 * 119.76666 * 359.73870 * 12 11 10 22 22 C 1.36255 * 119.87917 * 0.02562 * 21 12 11 23 23 C 1.39603 * 119.70868 * 0.27778 * 8 7 6 24 24 C 1.37940 * 119.85137 * 359.49583 * 23 8 7 25 25 H 1.09000 * 109.47022 * 296.05568 * 1 2 3 26 26 H 1.09006 * 109.46975 * 56.04795 * 1 2 3 27 27 H 1.08996 * 109.47819 * 176.05356 * 1 2 3 28 28 H 1.09004 * 109.47468 * 183.95769 * 3 2 1 29 29 H 1.09004 * 109.46686 * 303.94812 * 3 2 1 30 30 H 1.08998 * 109.47253 * 63.95084 * 3 2 1 31 31 H 1.09005 * 109.46985 * 306.03867 * 4 2 1 32 32 H 1.09005 * 109.46988 * 186.04412 * 4 2 1 33 33 H 1.08003 * 119.92683 * 359.97438 * 6 5 4 34 34 H 1.08005 * 120.07170 * 179.97438 * 7 6 5 35 35 H 1.08000 * 119.93964 * 359.97438 * 10 9 8 36 36 H 1.07992 * 120.06046 * 180.24989 * 11 10 9 37 37 H 0.97000 * 119.99013 * 180.02562 * 16 15 13 38 38 H 1.08005 * 120.06206 * 180.02562 * 21 12 11 39 39 H 1.08003 * 119.93944 * 179.97438 * 22 21 12 40 40 H 1.08000 * 120.07346 * 179.70028 * 23 8 7 41 41 H 1.08002 * 119.92517 * 180.20797 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9953 -0.7660 1.1377 5 6 1.6368 -2.2204 0.9730 6 6 2.4968 -3.0700 0.2996 7 6 2.1743 -4.4022 0.1450 8 6 0.9775 -4.8930 0.6701 9 6 0.6254 -6.3212 0.5085 10 6 1.4921 -7.1796 -0.1773 11 6 1.1750 -8.4966 -0.3248 12 6 -0.0334 -8.9914 0.2055 13 6 -0.3693 -10.3522 0.0507 14 1 -1.4043 -10.6596 0.0792 15 6 0.6388 -11.3050 -0.1400 16 7 1.8770 -11.0174 0.1681 17 14 0.2155 -12.9866 -0.8344 18 1 -0.3879 -12.8281 -2.1820 19 1 1.4504 -13.8048 -0.9375 20 1 -0.7528 -13.6640 0.0649 21 6 -0.9049 -8.1213 0.8907 22 6 -0.5759 -6.8072 1.0366 23 6 0.1119 -4.0294 1.3438 24 6 0.4486 -2.7004 1.4955 25 1 -0.3633 0.4514 0.9232 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3634 -1.0251 -0.0707 28 1 3.0829 1.3431 -0.0709 29 1 1.5899 1.9162 -0.8525 30 1 1.7044 1.8723 0.9232 31 1 1.5610 -0.3871 2.0629 32 1 3.0796 -0.6612 1.1757 33 1 3.4222 -2.6890 -0.1065 34 1 2.8462 -5.0642 -0.3811 35 1 2.4155 -6.7983 -0.5875 36 1 1.8464 -9.1590 -0.8507 37 1 2.5755 -11.6773 0.0356 38 1 -1.8320 -8.4955 1.2993 39 1 -1.2433 -6.1394 1.5612 40 1 -0.8177 -4.4018 1.7482 41 1 -0.2186 -2.0320 2.0195 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204625924.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:21 Heat of formation + Delta-G solvation = 39.424196 kcal Electronic energy + Delta-G solvation = -20403.158507 eV Core-core repulsion = 17439.935690 eV Total energy + Delta-G solvation = -2963.222818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.23954 -37.73862 -36.61801 -33.98655 -31.85183 -30.72093 -29.49712 -29.23712 -27.63125 -26.82096 -24.64998 -22.64872 -22.31452 -21.07909 -20.25350 -19.73049 -17.50766 -16.34966 -15.49980 -15.49018 -15.35479 -15.26146 -14.41454 -14.31673 -13.66815 -13.27604 -13.13533 -13.00426 -12.63747 -12.46273 -12.43326 -12.10526 -12.00286 -11.80422 -11.70504 -11.56945 -11.23390 -11.19576 -10.93804 -10.69525 -10.47182 -10.36831 -9.76747 -9.41447 -9.29769 -8.59443 -8.42149 -8.33652 -7.63274 -7.06125 -6.89186 -4.44531 1.57937 1.96287 2.77119 2.97865 3.00293 3.07310 3.17094 3.79707 3.95042 4.35333 4.71263 4.95080 5.03447 5.14823 5.24257 5.39219 5.44633 5.45047 5.56887 5.64222 5.66255 5.68087 5.75357 5.93122 5.96886 6.09652 6.21368 6.24310 6.57566 6.59337 6.80586 6.87516 6.89980 6.92971 6.99337 7.03495 7.10471 7.17936 7.36608 7.51534 7.53697 7.85923 7.92588 8.08179 8.14689 8.48546 8.71104 8.83931 9.97866 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.047679 B = 0.002937 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.121084 B = 9531.144393 C = 9836.067805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.542 5.542 3 C 0.024 3.976 4 C 0.103 3.897 5 C -0.127 4.127 6 C -0.087 4.087 7 C -0.147 4.147 8 C 0.028 3.972 9 C -0.207 4.207 10 C -0.074 4.074 11 C -0.173 4.173 12 C 0.119 3.881 13 C -0.447 4.447 14 H 0.082 0.918 15 C 0.074 3.926 16 N -0.778 5.778 17 Si 0.912 3.088 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.263 1.263 21 C -0.232 4.232 22 C -0.062 4.062 23 C -0.148 4.148 24 C -0.103 4.103 25 H 0.021 0.979 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.022 0.978 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.285 0.715 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.117 0.883 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.591 14.338 0.384 14.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.266 5.266 3 C -0.124 4.124 4 C -0.024 4.024 5 C -0.128 4.128 6 C -0.105 4.105 7 C -0.165 4.165 8 C 0.027 3.973 9 C -0.208 4.208 10 C -0.093 4.093 11 C -0.192 4.192 12 C 0.116 3.884 13 C -0.475 4.475 14 H 0.100 0.900 15 C -0.147 4.147 16 N -0.401 5.401 17 Si 0.736 3.264 18 H -0.186 1.186 19 H -0.201 1.201 20 H -0.188 1.188 21 C -0.251 4.251 22 C -0.080 4.080 23 C -0.166 4.166 24 C -0.121 4.121 25 H 0.040 0.960 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.110 0.890 36 H 0.136 0.864 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.135 0.865 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.002 14.004 -0.027 14.040 hybrid contribution -0.376 -0.394 0.521 0.754 sum 0.625 13.610 0.494 13.634 Atomic orbital electron populations 1.22452 0.87333 1.03091 0.99773 1.62004 1.08243 1.12991 1.43376 1.22382 1.00708 0.89092 1.00205 1.20955 0.99749 0.90791 0.90910 1.19390 0.96296 0.94120 1.02970 1.20748 0.98771 0.93184 0.97825 1.21196 0.97576 0.95155 1.02537 1.19022 0.92434 0.93139 0.92684 1.18093 0.98756 0.91021 1.12942 1.20545 0.97008 0.93916 0.97798 1.21002 0.99801 0.93815 1.04605 1.17730 0.90972 0.92760 0.86907 1.19690 0.94570 0.91681 1.41568 0.90024 1.26039 0.94414 1.01473 0.92741 1.69812 1.01657 1.36402 1.32253 0.86289 0.79039 0.80419 0.80646 1.18572 1.20125 1.18785 1.20688 1.02271 0.94081 1.08082 1.20398 0.94933 0.95014 0.97696 1.21126 1.00259 0.93086 1.02157 1.20767 0.95996 0.95349 1.00003 0.96008 0.91794 0.90400 0.91467 0.91510 0.95966 0.94614 0.90524 0.87036 0.86340 0.88952 0.86369 0.90368 0.88766 0.88984 0.86505 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.13 60.06 0.55 0.79 16 2 N -0.54 -6.42 5.01 -252.72 -1.27 -7.68 16 3 C 0.02 0.22 9.57 60.06 0.57 0.80 16 4 C 0.10 1.25 5.11 -4.98 -0.03 1.22 16 5 C -0.13 -1.88 4.89 -104.52 -0.51 -2.39 16 6 C -0.09 -1.37 9.68 -39.64 -0.38 -1.75 16 7 C -0.15 -2.65 9.43 -39.18 -0.37 -3.02 16 8 C 0.03 0.54 5.88 -104.89 -0.62 -0.07 16 9 C -0.21 -4.65 5.90 -104.63 -0.62 -5.27 16 10 C -0.07 -1.74 9.36 -39.65 -0.37 -2.11 16 11 C -0.17 -4.41 8.63 -39.27 -0.34 -4.75 16 12 C 0.12 3.10 5.57 -106.80 -0.60 2.51 16 13 C -0.45 -11.41 9.03 -37.86 -0.34 -11.76 16 14 H 0.08 1.98 7.91 -52.48 -0.42 1.57 16 15 C 0.07 1.77 5.13 -17.33 -0.09 1.68 16 16 N -0.78 -19.32 10.96 55.55 0.61 -18.71 16 17 Si 0.91 17.81 29.60 -169.99 -5.03 12.78 16 18 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 19 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 21 C -0.23 -5.59 9.73 -39.28 -0.38 -5.97 16 22 C -0.06 -1.40 9.36 -39.66 -0.37 -1.77 16 23 C -0.15 -2.60 9.43 -39.18 -0.37 -2.97 16 24 C -0.10 -1.56 7.94 -39.63 -0.31 -1.88 16 25 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 27 H 0.08 0.98 6.16 -51.93 -0.32 0.66 16 28 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 29 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 30 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.04 0.41 8.06 -51.93 -0.42 -0.01 16 32 H 0.08 0.85 8.00 -51.93 -0.42 0.44 16 33 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 34 H 0.12 2.07 6.18 -52.48 -0.32 1.75 16 35 H 0.09 1.95 6.18 -52.49 -0.32 1.62 16 36 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 37 H 0.29 6.41 8.29 -40.82 -0.34 6.07 16 38 H 0.09 2.12 8.06 -52.48 -0.42 1.69 16 39 H 0.09 1.81 6.18 -52.48 -0.32 1.48 16 40 H 0.12 1.94 6.18 -52.49 -0.32 1.62 16 41 H 0.11 1.39 8.02 -52.49 -0.42 0.97 16 LS Contribution 334.75 15.07 5.04 5.04 Total: -1.00 -26.80 334.75 -10.92 -37.72 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -5.70 Total: 7.56 kcal Atomic # 6 Polarization: -32.14 SS G_CDS: -4.57 Total: -36.72 kcal Atomic # 7 Polarization: -25.74 SS G_CDS: -0.66 Total: -26.39 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.80 -10.92 -37.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204625924.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.148 kcal (2) G-P(sol) polarization free energy of solvation -26.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds