Wall clock time and date at job start Tue Mar 31 2020 05:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00007 * 2 1 4 4 C 1.46896 * 111.00256 * 123.95521 * 2 1 3 5 5 C 1.50698 * 109.47386 * 169.99461 * 4 2 1 6 6 C 1.38320 * 119.87541 * 90.00223 * 5 4 2 7 7 C 1.38022 * 120.12163 * 180.02562 * 6 5 4 8 8 C 1.39334 * 119.87588 * 359.97438 * 7 6 5 9 9 C 1.48413 * 120.11386 * 179.97438 * 8 7 6 10 10 C 1.39718 * 120.00630 * 359.97438 * 9 8 7 11 11 C 1.38392 * 120.38101 * 179.74753 * 10 9 8 12 12 C 1.37719 * 120.37783 * 0.23194 * 11 10 9 13 13 C 1.40753 * 119.99149 * 0.02562 * 12 11 10 14 14 C 1.41413 * 120.18756 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00398 * 204.50817 * 14 13 12 16 16 C 1.39937 * 120.00066 * 24.50969 * 14 13 12 17 17 N 1.30829 * 119.99941 * 17.89255 * 16 14 13 18 18 Si 1.86800 * 120.00252 * 197.89204 * 16 14 13 19 19 H 1.48493 * 109.47230 * 89.99703 * 18 16 14 20 20 H 1.48504 * 109.47286 * 210.00148 * 18 16 14 21 21 H 1.48504 * 109.46986 * 329.99712 * 18 16 14 22 22 C 1.38735 * 119.99470 * 180.25822 * 9 8 7 23 23 C 1.39328 * 119.76054 * 0.25380 * 8 7 6 24 24 C 1.38013 * 119.87567 * 359.47420 * 23 8 7 25 25 H 1.09001 * 109.46850 * 296.04613 * 1 2 3 26 26 H 1.09007 * 109.47211 * 56.04322 * 1 2 3 27 27 H 1.08996 * 109.47350 * 176.04474 * 1 2 3 28 28 H 1.09001 * 109.47283 * 183.95666 * 3 2 1 29 29 H 1.08998 * 109.47550 * 303.95560 * 3 2 1 30 30 H 1.09002 * 109.47383 * 63.95995 * 3 2 1 31 31 H 1.09000 * 109.46786 * 50.00242 * 4 2 1 32 32 H 1.08998 * 109.47445 * 290.00019 * 4 2 1 33 33 H 1.08002 * 119.93987 * 359.97438 * 6 5 4 34 34 H 1.08002 * 120.06510 * 180.02562 * 7 6 5 35 35 H 1.08007 * 119.80703 * 0.02896 * 10 9 8 36 36 H 1.07998 * 119.81052 * 180.26110 * 11 10 9 37 37 H 1.08002 * 120.00353 * 179.97438 * 12 11 10 38 38 H 0.97005 * 120.00221 * 180.02562 * 17 16 14 39 39 H 1.07999 * 120.19052 * 359.97438 * 22 9 8 40 40 H 1.07999 * 120.05842 * 179.74283 * 23 8 7 41 41 H 1.08004 * 119.94241 * 180.27502 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4817 -0.9526 0.9727 6 6 4.3558 -0.0165 1.4952 7 6 5.7180 -0.1821 1.3467 8 6 6.2121 -1.2950 0.6696 9 6 7.6759 -1.4781 0.5064 10 6 8.5610 -0.5333 1.0317 11 6 9.9275 -0.6989 0.8886 12 6 10.4303 -1.7945 0.2226 13 6 9.5528 -2.7532 -0.3176 14 6 10.0645 -3.8795 -1.0027 15 1 9.4560 -4.3881 -1.7359 16 6 11.3594 -4.3351 -0.7308 17 7 11.9645 -3.9677 0.3694 18 14 12.2239 -5.4680 -1.9386 19 1 12.9838 -4.6556 -2.9222 20 1 13.1591 -6.3558 -1.2021 21 1 11.2159 -6.2932 -2.6515 22 6 8.1650 -2.5844 -0.1729 23 6 5.3270 -2.2324 0.1412 24 6 3.9670 -2.0597 0.3004 25 1 -0.3633 0.4513 0.9233 26 1 -0.3634 0.5741 -0.8525 27 1 -0.3634 -1.0252 -0.0709 28 1 3.0828 1.3432 -0.0709 29 1 1.5898 1.9164 -0.8524 30 1 1.7045 1.8723 0.9233 31 1 1.5090 -1.7407 1.1755 32 1 1.7976 -0.2248 2.0628 33 1 3.9716 0.8460 2.0195 34 1 6.3997 0.5492 1.7554 35 1 8.1767 0.3290 1.5565 36 1 10.6035 0.0349 1.3020 37 1 11.4978 -1.9175 0.1141 38 1 12.8623 -4.2832 0.5578 39 1 7.4835 -3.3145 -0.5839 40 1 5.7047 -3.0947 -0.3882 41 1 3.2801 -2.7880 -0.1050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204632157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:23 Heat of formation + Delta-G solvation = 40.838400 kcal Electronic energy + Delta-G solvation = -20476.114969 eV Core-core repulsion = 17512.953476 eV Total energy + Delta-G solvation = -2963.161493 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.38955 -37.70908 -36.63461 -33.82545 -31.97313 -30.81911 -29.75077 -28.92104 -27.69142 -26.03783 -25.29258 -22.72413 -22.44577 -21.16241 -20.17185 -19.83713 -17.40687 -16.17455 -15.55673 -15.54259 -15.31708 -14.97101 -14.79787 -14.38896 -13.80955 -13.34952 -13.17915 -13.02483 -12.61870 -12.57135 -12.42723 -12.26643 -11.95747 -11.78866 -11.68379 -11.55997 -11.20613 -11.13469 -10.86990 -10.67994 -10.51380 -10.31829 -9.70231 -9.37153 -9.22754 -8.72006 -8.53352 -8.42417 -7.51348 -6.94820 -6.76644 -4.37980 1.44753 1.82863 2.78356 3.03407 3.07359 3.10600 3.21642 3.89735 3.92956 4.35294 4.70089 4.84836 4.96193 5.07156 5.18489 5.29693 5.35299 5.37874 5.48514 5.55125 5.59947 5.64574 5.70299 5.86722 5.87297 5.99874 6.21829 6.27287 6.44183 6.52656 6.73487 6.80569 6.87311 6.91937 6.91984 6.99075 7.02591 7.20603 7.36882 7.41944 7.56918 7.84140 7.99818 8.04315 8.24719 8.59735 8.86814 8.92589 10.17940 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032067 B = 0.003226 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.948659 B = 8677.259775 C = 9275.919513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.542 5.542 3 C 0.021 3.979 4 C 0.099 3.901 5 C -0.105 4.105 6 C -0.114 4.114 7 C -0.123 4.123 8 C -0.007 4.007 9 C -0.043 4.043 10 C -0.220 4.220 11 C -0.109 4.109 12 C -0.155 4.155 13 C 0.106 3.894 14 C -0.465 4.465 15 H 0.078 0.922 16 C 0.076 3.924 17 N -0.795 5.795 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.262 1.262 22 C -0.201 4.201 23 C -0.120 4.120 24 C -0.096 4.096 25 H 0.023 0.977 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.022 0.978 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.280 0.720 39 H 0.097 0.903 40 H 0.126 0.874 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.831 5.964 1.078 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.127 4.127 4 C -0.028 4.028 5 C -0.105 4.105 6 C -0.132 4.132 7 C -0.141 4.141 8 C -0.008 4.008 9 C -0.043 4.043 10 C -0.239 4.239 11 C -0.127 4.127 12 C -0.174 4.174 13 C 0.104 3.896 14 C -0.494 4.494 15 H 0.096 0.904 16 C -0.141 4.141 17 N -0.421 5.421 18 Si 0.733 3.267 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.186 1.186 22 C -0.221 4.221 23 C -0.138 4.138 24 C -0.115 4.115 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.129 0.871 34 H 0.140 0.860 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.137 0.863 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.144 0.856 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.477 5.686 0.787 15.573 hybrid contribution 0.254 -0.101 0.341 0.436 sum -14.223 5.585 1.127 15.322 Atomic orbital electron populations 1.22387 0.87516 1.02179 1.00294 1.61985 1.07281 1.14165 1.43163 1.22468 1.02014 0.88347 0.99915 1.21003 0.92239 0.98370 0.91160 1.19514 0.93911 0.96084 1.00986 1.20837 0.93225 0.98482 1.00676 1.21212 0.94738 0.98084 1.00052 1.19172 0.93472 0.93350 0.94773 1.18340 0.89401 0.96278 1.00317 1.20427 0.93118 1.00697 1.09696 1.20634 0.94219 0.97755 1.00112 1.21434 1.00111 0.93568 1.02334 1.17547 0.90477 0.91847 0.89745 1.19562 0.98386 1.11106 1.20370 0.90385 1.25894 0.97306 0.96255 0.94678 1.69824 1.13520 1.37905 1.20824 0.86315 0.79508 0.79962 0.80959 1.19283 1.20351 1.18600 1.21102 0.95359 0.98754 1.06864 1.21326 0.92609 0.99598 1.00282 1.20831 0.95055 0.97272 0.98320 0.95889 0.91417 0.91389 0.90436 0.91670 0.95910 0.90249 0.94357 0.87105 0.85993 0.89080 0.89187 0.86335 0.90875 0.88450 0.85621 0.86558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.57 60.06 0.57 0.78 16 2 N -0.54 -6.09 5.01 -252.73 -1.27 -7.35 16 3 C 0.02 0.22 9.13 60.06 0.55 0.77 16 4 C 0.10 1.13 5.11 -4.98 -0.03 1.11 16 5 C -0.10 -1.47 4.89 -104.56 -0.51 -1.98 16 6 C -0.11 -1.64 7.94 -39.63 -0.31 -1.95 16 7 C -0.12 -2.08 9.43 -39.25 -0.37 -2.45 16 8 C -0.01 -0.14 5.88 -104.89 -0.62 -0.76 16 9 C -0.04 -0.98 5.87 -104.97 -0.62 -1.60 16 10 C -0.22 -4.91 9.44 -38.97 -0.37 -5.28 16 11 C -0.11 -2.55 10.01 -39.71 -0.40 -2.94 16 12 C -0.16 -4.02 8.69 -38.82 -0.34 -4.36 16 13 C 0.11 2.82 5.57 -106.87 -0.60 2.22 16 14 C -0.46 -12.27 9.05 -37.74 -0.34 -12.61 16 15 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 16 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 17 N -0.80 -20.51 10.96 55.55 0.61 -19.90 16 18 Si 0.91 18.62 29.60 -169.99 -5.03 13.59 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 22 C -0.20 -4.93 9.17 -38.53 -0.35 -5.28 16 23 C -0.12 -2.13 9.42 -39.26 -0.37 -2.50 16 24 C -0.10 -1.46 9.68 -39.63 -0.38 -1.84 16 25 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 27 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 28 H 0.08 0.93 6.16 -51.93 -0.32 0.61 16 29 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 30 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.83 8.00 -51.93 -0.42 0.41 16 32 H 0.04 0.41 8.06 -51.93 -0.42 -0.01 16 33 H 0.11 1.34 8.03 -52.49 -0.42 0.92 16 34 H 0.12 1.95 6.19 -52.49 -0.32 1.62 16 35 H 0.09 1.79 6.18 -52.48 -0.32 1.46 16 36 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 37 H 0.12 3.16 6.15 -52.49 -0.32 2.83 16 38 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 39 H 0.10 2.24 6.19 -52.49 -0.33 1.91 16 40 H 0.13 2.20 6.20 -52.49 -0.33 1.88 16 41 H 0.12 1.53 8.06 -52.48 -0.42 1.10 16 LS Contribution 335.00 15.07 5.05 5.05 Total: -1.00 -27.75 335.00 -10.91 -38.66 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.70 Total: 6.81 kcal Atomic # 6 Polarization: -32.29 SS G_CDS: -4.57 Total: -36.85 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: -0.66 Total: -27.25 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.75 -10.91 -38.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204632157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.497 kcal (2) G-P(sol) polarization free energy of solvation -27.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds