Wall clock time and date at job start Tue Mar 31 2020 05:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46645 * 2 1 4 4 N 1.46901 * 109.47057 * 181.98977 * 3 2 1 5 5 C 1.46894 * 111.00412 * 199.96557 * 4 3 2 6 6 C 1.50697 * 109.47106 * 66.04297 * 5 4 3 7 7 H 1.08003 * 120.00172 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99865 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00418 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99889 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47111 * 89.99993 * 10 8 6 12 12 H 1.48500 * 109.47097 * 210.00303 * 10 8 6 13 13 H 1.48503 * 109.46981 * 329.99655 * 10 8 6 14 14 C 1.46907 * 111.00140 * 76.00528 * 4 3 2 15 15 C 1.50698 * 109.47245 * 195.80798 * 14 4 3 16 16 C 1.38241 * 119.95809 * 254.19959 * 15 14 4 17 17 C 1.38139 * 120.08097 * 179.76535 * 16 15 14 18 18 C 1.38769 * 119.99086 * 0.53964 * 17 16 15 19 19 O 1.35899 * 120.04047 * 179.70275 * 18 17 16 20 20 C 1.42895 * 117.00168 * 0.02562 * 19 18 17 21 21 C 1.38668 * 119.91688 * 359.71686 * 18 17 16 22 22 C 1.38385 * 119.91867 * 0.02562 * 21 18 17 23 23 F 1.35104 * 119.99768 * 180.02562 * 22 21 18 24 24 H 1.09000 * 109.47623 * 299.99614 * 1 2 3 25 25 H 1.08997 * 109.47715 * 60.00141 * 1 2 3 26 26 H 1.09000 * 109.47010 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46923 * 240.00501 * 2 1 3 28 28 H 1.08994 * 109.47215 * 119.99793 * 2 1 3 29 29 H 1.09002 * 109.46999 * 61.99169 * 3 2 1 30 30 H 1.09003 * 109.47584 * 301.98437 * 3 2 1 31 31 H 1.08993 * 109.47352 * 186.04471 * 5 4 3 32 32 H 1.09003 * 109.46856 * 306.04216 * 5 4 3 33 33 H 0.96999 * 120.00445 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.47124 * 315.81476 * 14 4 3 35 35 H 1.09006 * 109.46367 * 75.81323 * 14 4 3 36 36 H 1.08007 * 119.96372 * 0.02562 * 16 15 14 37 37 H 1.07996 * 120.00589 * 180.25230 * 17 16 15 38 38 H 1.09001 * 109.47115 * 180.02562 * 20 19 18 39 39 H 1.08996 * 109.47201 * 300.00608 * 20 19 18 40 40 H 1.09007 * 109.47011 * 60.00586 * 20 19 18 41 41 H 1.07995 * 120.03966 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5081 1.4429 -0.0481 5 6 4.0498 2.7265 0.4176 6 6 3.7390 2.9014 1.8817 7 1 3.1939 2.1354 2.4133 8 6 4.1505 4.0393 2.5427 9 7 4.8138 4.9723 1.8953 10 14 3.7658 4.2557 4.3578 11 1 4.8705 3.6847 5.1694 12 1 3.6225 5.7016 4.6644 13 1 2.4985 3.5530 4.6825 14 6 3.9907 1.1268 -1.3991 15 6 5.4499 0.7554 -1.3372 16 6 6.4082 1.6443 -1.7874 17 6 7.7467 1.3084 -1.7274 18 6 8.1300 0.0729 -1.2250 19 8 9.4463 -0.2609 -1.1711 20 6 10.3815 0.7084 -1.6481 21 6 7.1683 -0.8206 -0.7784 22 6 5.8287 -0.4783 -0.8353 23 9 4.8903 -1.3475 -0.4001 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.7059 1.9459 0.9073 30 1 1.6477 1.9666 -0.8717 31 1 5.1298 2.7396 0.2713 32 1 3.5965 3.5394 -0.1498 33 1 5.1029 5.7730 2.3602 34 1 3.4196 0.2906 -1.8025 35 1 3.8643 1.9974 -2.0429 36 1 6.1102 2.6042 -2.1828 37 1 8.4946 2.0054 -2.0757 38 1 11.3937 0.3161 -1.5492 39 1 10.1771 0.9254 -2.6965 40 1 10.2872 1.6231 -1.0626 41 1 7.4644 -1.7825 -0.3867 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204928933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:23 Heat of formation + Delta-G solvation = -63.256626 kcal Electronic energy + Delta-G solvation = -22418.227624 eV Core-core repulsion = 19019.783007 eV Total energy + Delta-G solvation = -3398.444617 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.41375 -39.91949 -37.83031 -36.37155 -33.08144 -32.39543 -30.81577 -30.04705 -27.66788 -27.05712 -25.53825 -23.87638 -22.53904 -21.56075 -20.92028 -19.69584 -18.24763 -16.71049 -16.36878 -15.81136 -15.74007 -15.51140 -15.06988 -14.77417 -14.45323 -14.37300 -14.06987 -13.54208 -13.38080 -12.95970 -12.63885 -12.42283 -12.24676 -12.07421 -11.96075 -11.56236 -11.47083 -11.11856 -10.93735 -10.79341 -10.73083 -10.69265 -10.61565 -10.26190 -9.95135 -9.69132 -9.15900 -8.57117 -8.39838 -7.89585 -7.20088 -6.00217 -4.00147 1.46033 1.55793 3.22314 3.33883 3.39640 3.43489 3.83401 4.45644 4.75383 4.87497 4.98885 5.09901 5.13355 5.16838 5.26651 5.35831 5.40990 5.50367 5.53484 5.59932 5.65344 5.84179 5.93562 6.03695 6.12871 6.27282 6.29345 6.34526 6.35066 6.49344 6.49555 6.72000 6.80479 6.91090 6.97216 7.34862 7.37637 7.45531 7.84299 8.13474 8.25965 8.58685 9.07507 9.63485 11.10702 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011945 B = 0.006197 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.498655 B = 4517.390648 C = 6128.151529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C 0.063 3.937 4 N -0.531 5.531 5 C 0.192 3.808 6 C -0.503 4.503 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.096 3.904 15 C -0.129 4.129 16 C -0.040 4.040 17 C -0.218 4.218 18 C 0.146 3.854 19 O -0.318 6.318 20 C 0.028 3.972 21 C -0.196 4.196 22 C 0.163 3.837 23 F -0.126 7.126 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.017 0.983 31 H 0.034 0.966 32 H -0.011 1.011 33 H 0.260 0.740 34 H 0.072 0.928 35 H 0.036 0.964 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.269 -8.554 -9.572 13.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.065 4.065 4 N -0.255 5.255 5 C 0.067 3.933 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.032 4.032 15 C -0.130 4.130 16 C -0.059 4.059 17 C -0.237 4.237 18 C 0.100 3.900 19 O -0.231 6.231 20 C -0.067 4.067 21 C -0.216 4.216 22 C 0.143 3.857 23 F -0.105 7.105 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.036 0.964 31 H 0.052 0.948 32 H 0.006 0.994 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.565 -8.937 -9.136 13.571 hybrid contribution -0.390 1.081 0.518 1.260 sum 4.175 -7.856 -8.618 12.386 Atomic orbital electron populations 1.21734 0.96701 1.00750 1.01460 1.21526 0.94175 0.97901 1.01986 1.22032 0.88160 0.95264 1.01091 1.62103 1.07304 1.36750 1.19353 1.19755 0.95544 0.82652 0.95312 1.21167 1.35344 1.03269 0.94430 0.91895 1.24959 0.95387 0.95900 0.98286 1.69952 1.38878 1.08835 1.36236 0.86542 0.78803 0.76994 0.85353 1.20701 1.21380 1.19838 1.20874 0.90373 0.99517 0.92443 1.19809 0.97262 0.93209 1.02756 1.20734 0.91346 0.98103 0.95673 1.21162 0.97410 0.96850 1.08279 1.18514 0.83051 0.92917 0.95494 1.86023 1.13479 1.43474 1.80172 1.23051 0.91872 0.92717 0.99085 1.20118 0.90082 1.01935 1.09454 1.16982 0.84833 0.87708 0.96174 1.91499 1.64065 1.68047 1.86860 0.92768 0.93369 0.93348 0.92936 0.91494 0.89528 0.96439 0.94807 0.99371 0.93061 0.91002 0.94616 0.85012 0.85241 0.88425 0.92668 0.92334 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.12 -1.94 6.07 -26.73 -0.16 -2.11 16 3 C 0.06 1.23 4.80 -3.82 -0.02 1.21 16 4 N -0.53 -11.54 4.37 -237.51 -1.04 -12.57 16 5 C 0.19 4.99 4.57 -4.98 -0.02 4.97 16 6 C -0.50 -14.22 8.23 -34.44 -0.28 -14.50 16 7 H 0.06 1.78 7.32 -52.48 -0.38 1.40 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 10 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.10 1.77 4.61 -4.97 -0.02 1.75 16 15 C -0.13 -2.32 4.66 -104.53 -0.49 -2.81 16 16 C -0.04 -0.66 8.95 -39.62 -0.35 -1.01 16 17 C -0.22 -3.25 9.04 -39.42 -0.36 -3.61 16 18 C 0.15 2.24 6.68 -39.23 -0.26 1.98 16 19 O -0.32 -4.37 10.50 -19.42 -0.20 -4.58 16 20 C 0.03 0.26 9.81 101.05 0.99 1.26 16 21 C -0.20 -3.18 9.97 -39.37 -0.39 -3.58 16 22 C 0.16 2.90 7.24 -39.44 -0.29 2.62 16 23 F -0.13 -2.31 16.76 2.25 0.04 -2.28 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.83 6.72 -51.93 -0.35 0.48 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.09 1.89 6.58 -51.93 -0.34 1.54 16 30 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 31 H 0.03 0.94 6.69 -51.93 -0.35 0.59 16 32 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.07 1.21 6.48 -51.93 -0.34 0.88 16 35 H 0.04 0.64 7.85 -51.93 -0.41 0.23 16 36 H 0.13 2.03 7.99 -52.48 -0.42 1.61 16 37 H 0.13 1.58 6.30 -52.49 -0.33 1.25 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 40 H 0.06 0.55 7.66 -51.92 -0.40 0.15 16 41 H 0.14 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 340.21 15.07 5.13 5.13 Total: -1.00 -30.96 340.21 -7.97 -38.93 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.22 Total: -1.58 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -1.39 Total: -14.02 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.30 Total: -38.49 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.20 Total: -4.58 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.96 -7.97 -38.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204928933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.327 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds