Wall clock time and date at job start Tue Mar 31 2020 05:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47432 * 2 1 4 4 C 1.52994 * 109.47156 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46897 * 180.02562 * 4 3 2 6 6 C 1.36936 * 120.00012 * 269.51976 * 5 4 3 7 7 H 1.07994 * 120.00028 * 321.09284 * 6 5 4 8 8 C 1.38816 * 119.99991 * 141.09404 * 6 5 4 9 9 N 1.31620 * 120.00144 * 158.41386 * 8 6 5 10 10 Si 1.86800 * 119.99839 * 338.41133 * 8 6 5 11 11 H 1.48499 * 109.46892 * 95.65223 * 10 8 6 12 12 H 1.48500 * 109.47254 * 215.65041 * 10 8 6 13 13 H 1.48496 * 109.47321 * 335.65062 * 10 8 6 14 14 C 1.46498 * 120.00068 * 89.51961 * 5 4 3 15 15 C 1.50703 * 109.47182 * 90.00122 * 14 5 4 16 16 C 1.38255 * 119.95674 * 260.25814 * 15 14 5 17 17 C 1.38136 * 120.07939 * 180.30007 * 16 15 14 18 18 C 1.38766 * 119.99543 * 359.71681 * 17 16 15 19 19 O 1.35892 * 120.04566 * 179.97438 * 18 17 16 20 20 C 1.42901 * 116.99736 * 0.02562 * 19 18 17 21 21 C 1.38675 * 119.91133 * 0.02562 * 18 17 16 22 22 C 1.38384 * 119.92256 * 0.02562 * 21 18 17 23 23 F 1.35103 * 119.99603 * 179.97438 * 22 21 18 24 24 H 1.09001 * 109.47131 * 300.00029 * 1 2 3 25 25 H 1.09000 * 109.47051 * 59.99850 * 1 2 3 26 26 H 1.08999 * 109.47071 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47131 * 239.99971 * 2 1 3 28 28 H 1.09000 * 109.47051 * 120.00150 * 2 1 3 29 29 H 1.09001 * 109.46986 * 59.99882 * 3 2 1 30 30 H 1.09000 * 109.47125 * 300.00105 * 3 2 1 31 31 H 1.09003 * 109.47548 * 60.00758 * 4 3 2 32 32 H 1.09000 * 109.47409 * 300.00199 * 4 3 2 33 33 H 0.96996 * 119.99872 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.47111 * 330.00206 * 14 5 4 35 35 H 1.09002 * 109.47389 * 209.99933 * 14 5 4 36 36 H 1.08002 * 119.96046 * 0.02562 * 16 15 14 37 37 H 1.08002 * 120.00137 * 179.69978 * 17 16 15 38 38 H 1.08999 * 109.46949 * 299.99322 * 20 19 18 39 39 H 1.08998 * 109.47249 * 59.99915 * 20 19 18 40 40 H 1.09002 * 109.47182 * 179.97438 * 20 19 18 41 41 H 1.08000 * 120.03553 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2964 3.4662 -1.1843 7 1 4.7370 2.9287 -2.0108 8 6 3.9715 4.8086 -1.3237 9 7 4.5561 5.5341 -2.2533 10 14 2.7044 5.5852 -0.1919 11 1 3.3952 6.2496 0.9424 12 1 1.9153 6.5905 -0.9481 13 1 1.7957 4.5330 0.3298 14 6 4.2919 3.5174 1.2702 15 6 5.7116 3.2817 1.7177 16 6 5.9830 2.3243 2.6775 17 6 7.2826 2.1105 3.0940 18 6 8.3182 2.8531 2.5446 19 8 9.5970 2.6439 2.9540 20 6 9.8028 1.6432 3.9532 21 6 8.0462 3.8096 1.5781 22 6 6.7429 4.0216 1.1642 23 9 6.4762 4.9535 0.2231 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8892 32 1 3.9329 0.9287 0.8908 33 1 4.3292 6.4722 -2.3505 34 1 3.6048 3.1352 2.0252 35 1 4.1261 4.5864 1.1359 36 1 5.1774 1.7460 3.1053 37 1 7.4926 1.3657 3.8473 38 1 9.2471 1.9082 4.8526 39 1 9.4534 0.6804 3.5805 40 1 10.8652 1.5776 4.1882 41 1 8.8508 4.3884 1.1489 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204934171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:55 Heat of formation + Delta-G solvation = -43.201613 kcal Electronic energy + Delta-G solvation = -22677.765848 eV Core-core repulsion = 19280.190881 eV Total energy + Delta-G solvation = -3397.574966 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.86902 -39.78305 -37.49286 -36.10187 -34.06339 -31.66079 -30.76844 -30.01525 -28.13401 -27.38292 -25.17972 -24.02026 -22.33991 -21.41172 -20.86935 -19.85216 -18.08554 -16.87520 -16.52663 -15.71445 -15.42825 -15.35741 -14.91338 -14.70081 -14.59764 -14.16221 -13.94005 -13.57098 -13.24785 -12.93763 -12.57617 -12.37693 -12.16165 -12.12686 -11.93485 -11.90037 -11.55969 -11.15840 -10.82966 -10.75748 -10.67398 -10.54205 -10.48273 -10.25022 -9.91722 -9.83218 -9.52342 -8.44149 -8.38260 -7.72773 -6.80073 -5.92506 -3.34540 1.63009 1.71932 3.31657 3.34923 3.49598 3.53742 4.00071 4.57901 4.93820 5.01537 5.06202 5.10906 5.17384 5.29893 5.32319 5.35338 5.39933 5.49430 5.56034 5.62444 5.70148 5.79833 5.90688 6.08931 6.11864 6.23635 6.27916 6.32176 6.40750 6.48043 6.50995 6.52548 6.60856 6.70919 6.92240 6.94566 7.10230 7.20655 7.59898 8.10950 8.45936 9.02120 9.77295 10.16275 11.22764 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014617 B = 0.006431 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.118335 B = 4352.960657 C = 5760.655828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.153 3.847 5 N -0.595 5.595 6 C -0.270 4.270 7 H 0.076 0.924 8 C 0.052 3.948 9 N -0.888 5.888 10 Si 0.865 3.135 11 H -0.286 1.286 12 H -0.301 1.301 13 H -0.265 1.265 14 C 0.173 3.827 15 C -0.155 4.155 16 C -0.055 4.055 17 C -0.229 4.229 18 C 0.137 3.863 19 O -0.319 6.319 20 C 0.030 3.970 21 C -0.200 4.200 22 C 0.169 3.831 23 F -0.101 7.101 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.036 0.964 33 H 0.262 0.738 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.095 0.905 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.816 -9.090 12.146 15.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.027 3.973 5 N -0.315 5.315 6 C -0.398 4.398 7 H 0.094 0.906 8 C -0.150 4.150 9 N -0.528 5.528 10 Si 0.695 3.305 11 H -0.214 1.214 12 H -0.229 1.229 13 H -0.190 1.190 14 C 0.048 3.952 15 C -0.159 4.159 16 C -0.074 4.074 17 C -0.248 4.248 18 C 0.092 3.908 19 O -0.233 6.233 20 C -0.065 4.065 21 C -0.219 4.219 22 C 0.148 3.852 23 F -0.079 7.079 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.978 -8.796 11.905 15.099 hybrid contribution -0.771 0.541 0.575 1.103 sum 2.207 -8.256 12.480 15.125 Atomic orbital electron populations 1.21768 0.96746 1.00590 1.01636 1.21498 0.95110 0.98188 1.01186 1.22225 0.99160 0.94633 1.01950 1.20913 0.91111 0.86290 0.98996 1.44132 1.74494 1.11514 1.01401 1.18666 1.36482 0.93871 0.90808 0.90647 1.25372 0.97041 0.96691 0.95856 1.69856 1.40758 1.07024 1.35183 0.87114 0.83876 0.79019 0.80522 1.21365 1.22932 1.18999 1.20145 0.88567 0.97955 0.88559 1.20985 0.99017 0.97978 0.97921 1.20610 0.95624 0.95875 0.95253 1.21065 0.93221 1.04635 1.05843 1.18483 0.83025 0.94954 0.94323 1.86030 1.24668 1.56510 1.56094 1.22992 1.02642 0.90617 0.90257 1.20232 0.96290 1.03131 1.02263 1.17228 0.91889 0.88434 0.87602 1.91717 1.94234 1.61382 1.60579 0.93203 0.92871 0.93530 0.92356 0.92818 0.93281 0.91651 0.93081 0.94589 0.92822 0.93060 0.91910 0.85690 0.85799 0.92821 0.92748 0.88613 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.15 0.37 -1.54 16 2 C -0.12 -1.72 5.93 -26.73 -0.16 -1.88 16 3 C -0.14 -2.50 5.54 -26.73 -0.15 -2.64 16 4 C 0.15 2.97 5.67 -4.04 -0.02 2.95 16 5 N -0.59 -13.86 2.04 -174.61 -0.36 -14.22 16 6 C -0.27 -7.43 9.19 -15.06 -0.14 -7.57 16 7 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 8 C 0.05 1.49 4.35 -17.43 -0.08 1.41 16 9 N -0.89 -26.95 13.97 55.49 0.78 -26.17 16 10 Si 0.86 22.14 25.05 -169.99 -4.26 17.88 16 11 H -0.29 -7.24 6.70 56.52 0.38 -6.86 16 12 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 14 C 0.17 3.77 4.34 -5.19 -0.02 3.75 16 15 C -0.15 -3.10 5.47 -104.53 -0.57 -3.67 16 16 C -0.05 -0.88 9.66 -39.61 -0.38 -1.27 16 17 C -0.23 -3.36 9.04 -39.42 -0.36 -3.72 16 18 C 0.14 2.23 6.68 -39.22 -0.26 1.97 16 19 O -0.32 -4.59 10.50 -19.40 -0.20 -4.79 16 20 C 0.03 0.28 9.81 101.05 0.99 1.28 16 21 C -0.20 -3.71 9.97 -39.37 -0.39 -4.10 16 22 C 0.17 3.61 7.24 -39.44 -0.29 3.33 16 23 F -0.10 -2.55 14.93 2.25 0.03 -2.51 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 32 H 0.04 0.62 8.08 -51.93 -0.42 0.20 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.05 0.98 7.93 -51.93 -0.41 0.56 16 35 H 0.06 1.53 3.19 -51.93 -0.17 1.36 16 36 H 0.13 1.70 8.04 -52.49 -0.42 1.28 16 37 H 0.12 1.42 6.30 -52.49 -0.33 1.08 16 38 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 39 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.14 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 336.66 15.07 5.07 5.07 Total: -1.00 -31.05 336.66 -6.74 -37.79 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.35 Total: -1.36 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -1.46 Total: -11.70 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.42 Total: -40.39 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.20 Total: -4.79 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.03 Total: -2.51 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.26 Total: 17.88 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.05 -6.74 -37.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204934171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.407 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds