Wall clock time and date at job start Tue Mar 31 2020 05:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34368 * 126.77166 * 2 1 4 4 N 1.30859 * 108.20499 * 180.02562 * 3 2 1 5 5 C 1.33632 * 109.77892 * 0.02562 * 4 3 2 6 6 N 1.39885 * 125.60350 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99995 * 0.02726 * 6 5 4 8 8 O 1.21579 * 119.99919 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99548 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99818 * 179.97438 * 9 7 6 11 11 C 1.52991 * 109.47355 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47512 * 300.00082 * 11 10 9 13 13 C 1.52998 * 109.47040 * 59.99855 * 11 10 9 14 14 C 1.52999 * 109.47295 * 179.97438 * 11 10 9 15 15 C 1.50698 * 109.47360 * 180.02562 * 14 11 10 16 16 H 1.08011 * 120.00084 * 359.97438 * 15 14 11 17 17 C 1.37876 * 120.00681 * 180.02562 * 15 14 11 18 18 N 1.31525 * 119.99230 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00790 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46531 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.47139 * 119.99564 * 19 17 15 22 22 H 1.48504 * 109.47240 * 240.00221 * 19 17 15 23 23 N 1.31168 * 108.78887 * 0.23922 * 5 4 3 24 24 H 1.08993 * 109.46966 * 89.99842 * 1 2 3 25 25 H 1.08997 * 109.47355 * 210.00643 * 1 2 3 26 26 H 1.09003 * 109.46585 * 330.00063 * 1 2 3 27 27 H 1.08003 * 125.89490 * 359.97438 * 3 2 1 28 28 H 0.97000 * 119.99330 * 180.02562 * 6 5 4 29 29 H 0.96996 * 120.00581 * 359.97438 * 9 7 6 30 30 H 1.08996 * 109.46953 * 299.99892 * 10 9 7 31 31 H 1.09011 * 109.47128 * 59.99579 * 10 9 7 32 32 H 1.08997 * 109.46747 * 59.99742 * 12 11 10 33 33 H 1.08995 * 109.47358 * 179.97438 * 12 11 10 34 34 H 1.08997 * 109.47092 * 300.00070 * 12 11 10 35 35 H 1.09002 * 109.47201 * 60.00340 * 13 11 10 36 36 H 1.09005 * 109.47196 * 179.97438 * 13 11 10 37 37 H 1.08997 * 109.47325 * 300.00323 * 13 11 10 38 38 H 1.08994 * 109.47343 * 300.00092 * 14 11 10 39 39 H 1.08997 * 109.46885 * 60.00190 * 14 11 10 40 40 H 0.97002 * 119.99349 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2694 1.0763 0.0000 4 7 3.5098 0.6597 -0.0006 5 6 3.5381 -0.6764 -0.0015 6 7 4.6924 -1.4665 -0.0028 7 6 5.9078 -0.8839 -0.0026 8 8 6.0009 0.3283 -0.0018 9 7 7.0199 -1.6453 -0.0044 10 6 8.3411 -1.0121 -0.0048 11 6 9.4244 -2.0924 -0.0063 12 6 9.2771 -2.9642 1.2424 13 6 9.2754 -2.9624 -1.2560 14 6 10.8041 -1.4312 -0.0074 15 6 11.8712 -2.4953 -0.0094 16 1 11.5931 -3.5390 -0.0095 17 6 13.2025 -2.1367 -0.0102 18 7 13.5411 -0.8658 -0.0095 19 14 14.5252 -3.4557 -0.0120 20 1 13.8870 -4.7966 -0.0131 21 1 15.3691 -3.3088 -1.2250 22 1 15.3709 -3.3104 1.2000 23 7 2.3055 -1.1250 -0.0067 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3632 0.8900 0.5139 27 1 1.9476 2.1073 -0.0004 28 1 4.6181 -2.4336 -0.0038 29 1 6.9457 -2.6124 -0.0054 30 1 8.4459 -0.3908 -0.8942 31 1 8.4474 -0.3926 0.8858 32 1 8.2942 -3.4353 1.2427 33 1 10.0486 -3.7342 1.2411 34 1 9.3832 -2.3445 2.1328 35 1 9.3804 -2.3414 -2.1457 36 1 10.0475 -3.7318 -1.2573 37 1 8.2924 -3.4335 -1.2558 38 1 10.9088 -0.8105 -0.8971 39 1 10.9105 -0.8112 0.8828 40 1 14.4777 -0.6135 -0.0097 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205753809.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:04 Heat of formation + Delta-G solvation = 67.394430 kcal Electronic energy + Delta-G solvation = -21612.136495 eV Core-core repulsion = 18271.570046 eV Total energy + Delta-G solvation = -3340.566449 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.23575 -39.87843 -37.28969 -35.14814 -33.75456 -33.20439 -32.00147 -31.05989 -27.43203 -26.99518 -26.48687 -26.02540 -23.28432 -22.50843 -21.80523 -20.37014 -18.75849 -18.00823 -17.44479 -16.38604 -16.36638 -16.09948 -15.27654 -15.04468 -14.59399 -14.34840 -13.98179 -13.93486 -13.49172 -13.38325 -13.04318 -12.73037 -12.20572 -12.04945 -11.95929 -11.22782 -11.02453 -10.91834 -10.82044 -10.61934 -10.38661 -10.31490 -10.22043 -9.96383 -9.85433 -9.72095 -9.19074 -8.90291 -8.89854 -8.55441 -8.34107 -5.98023 -3.99108 1.41834 1.79761 2.66219 2.74209 3.31673 3.39753 3.42038 3.57358 3.98029 4.22858 4.45430 4.48987 4.74083 4.95771 5.00336 5.36100 5.37603 5.51114 5.66190 5.77223 6.09113 6.20038 6.20984 6.27517 6.43251 6.45732 6.58495 6.61577 6.65473 6.79093 6.82717 7.08560 7.10159 7.15413 7.66979 7.79115 7.81744 8.01016 8.22738 8.42518 8.70509 9.05909 9.63894 11.13463 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.058952 B = 0.002758 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.845296 B =10149.895732 C =10423.079847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.387 5.387 3 C 0.267 3.733 4 N -0.515 5.515 5 C 0.475 3.525 6 N -0.642 5.642 7 C 0.698 3.302 8 O -0.535 6.535 9 N -0.729 5.729 10 C 0.147 3.853 11 C -0.072 4.072 12 C -0.127 4.127 13 C -0.127 4.127 14 C 0.035 3.965 15 C -0.510 4.510 16 H 0.060 0.940 17 C 0.055 3.945 18 N -0.894 5.894 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 N -0.352 5.352 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.222 0.778 28 H 0.417 0.583 29 H 0.395 0.605 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.028 0.972 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.028 0.972 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.617 -0.792 0.093 25.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.180 5.180 3 C -0.030 4.030 4 N -0.245 5.245 5 C 0.104 3.896 6 N -0.299 5.299 7 C 0.397 3.603 8 O -0.406 6.406 9 N -0.386 5.386 10 C 0.024 3.976 11 C -0.072 4.072 12 C -0.184 4.184 13 C -0.185 4.185 14 C -0.002 4.002 15 C -0.548 4.548 16 H 0.078 0.922 17 C -0.146 4.146 18 N -0.533 5.533 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.212 1.212 23 N -0.189 5.189 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.238 0.762 28 H 0.253 0.747 29 H 0.230 0.770 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.216 -0.069 0.089 25.216 hybrid contribution 0.466 -1.393 -0.014 1.469 sum -24.749 -1.462 0.076 24.792 Atomic orbital electron populations 1.21900 0.73700 1.04817 1.03676 1.50113 1.07644 1.03688 1.56517 1.26202 0.85024 0.95718 0.96103 1.70693 1.19504 1.09053 1.25204 1.19960 0.85714 0.87475 0.96453 1.41689 1.01381 1.09072 1.77744 1.15876 0.79581 0.85972 0.78902 1.91056 1.84605 1.11100 1.53836 1.45340 1.04973 1.09466 1.78796 1.21576 0.78271 0.95673 1.02044 1.20920 0.96659 0.94553 0.95111 1.21763 0.99312 1.00037 0.97329 1.21766 0.99305 1.00055 0.97324 1.19101 0.87778 0.95728 0.97624 1.21215 0.90543 0.92926 1.50098 0.92204 1.25024 0.98818 0.95132 0.95616 1.69984 1.17084 1.15317 1.50959 0.86591 0.82105 0.82101 0.77503 1.19823 1.21166 1.21159 1.78147 0.99339 1.06909 1.34533 0.90410 0.89177 0.88881 0.76168 0.74666 0.76992 0.91676 0.91681 0.95281 0.91436 0.93292 0.93297 0.91430 0.95280 0.96224 0.96226 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.38 11.53 59.85 0.69 1.07 16 2 N -0.39 -3.62 4.03 -69.45 -0.28 -3.90 16 3 C 0.27 2.67 12.65 -90.69 -1.15 1.52 16 4 N -0.51 -7.94 9.37 -14.92 -0.14 -8.08 16 5 C 0.47 7.05 8.81 -320.82 -2.83 4.22 16 6 N -0.64 -8.77 5.44 -17.22 -0.09 -8.87 16 7 C 0.70 11.59 8.53 -86.92 -0.74 10.85 16 8 O -0.54 -11.20 15.02 5.30 0.08 -11.12 16 9 N -0.73 -10.89 4.96 -65.23 -0.32 -11.21 16 10 C 0.15 2.64 4.56 -4.04 -0.02 2.62 16 11 C -0.07 -1.36 0.54 -154.51 -0.08 -1.44 16 12 C -0.13 -2.21 8.05 37.16 0.30 -1.92 16 13 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 14 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 15 C -0.51 -13.49 7.65 -34.44 -0.26 -13.76 16 16 H 0.06 1.52 5.68 -52.48 -0.30 1.23 16 17 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 18 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 19 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 N -0.35 -4.54 12.72 30.04 0.38 -4.16 16 24 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 27 H 0.22 1.03 8.06 -52.48 -0.42 0.61 16 28 H 0.42 4.18 8.84 -40.82 -0.36 3.82 16 29 H 0.40 4.82 6.18 -40.82 -0.25 4.56 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 32 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 33 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 37 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 332.85 15.07 5.02 5.02 Total: -1.00 -36.67 332.85 -9.32 -45.99 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.67 Total: 2.40 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -4.00 Total: 3.45 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.28 Total: -61.95 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.67 -9.32 -45.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205753809.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.385 kcal (2) G-P(sol) polarization free energy of solvation -36.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds