Wall clock time and date at job start Tue Mar 31 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36937 * 119.99710 * 2 1 4 4 H 1.07999 * 119.99990 * 200.26767 * 3 2 1 5 5 C 1.38813 * 120.00039 * 20.27348 * 3 2 1 6 6 N 1.31617 * 120.00324 * 11.57430 * 5 3 2 7 7 Si 1.86800 * 119.99887 * 191.57130 * 5 3 2 8 8 H 1.48504 * 109.47135 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.47012 * 119.99861 * 7 5 3 10 10 H 1.48502 * 109.47561 * 240.00028 * 7 5 3 11 11 C 1.46500 * 120.00155 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46921 * 89.99286 * 11 2 1 13 13 C 1.50700 * 109.47442 * 294.99906 * 12 11 2 14 14 C 1.38235 * 119.99867 * 306.66807 * 13 12 11 15 15 C 1.38236 * 119.99760 * 179.76599 * 14 13 12 16 16 C 1.38237 * 120.00046 * 0.50642 * 15 14 13 17 17 C 1.38239 * 119.99704 * 359.74120 * 16 15 14 18 18 C 1.38231 * 119.99764 * 126.94012 * 13 12 11 19 19 C 1.50703 * 109.46767 * 174.99932 * 12 11 2 20 20 C 1.38236 * 120.00055 * 230.04812 * 19 12 11 21 21 C 1.38233 * 120.00078 * 179.76752 * 20 19 12 22 22 C 1.38243 * 119.99769 * 0.50723 * 21 20 19 23 23 C 1.38239 * 119.99745 * 359.74749 * 22 21 20 24 24 C 1.38230 * 120.00082 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.46822 * 274.95362 * 1 2 3 26 26 H 1.09000 * 109.47559 * 34.95011 * 1 2 3 27 27 H 1.08996 * 109.47474 * 154.95558 * 1 2 3 28 28 H 0.96993 * 120.00387 * 179.97438 * 6 5 3 29 29 H 1.09001 * 109.47068 * 329.99671 * 11 2 1 30 30 H 1.08992 * 109.46680 * 209.99376 * 11 2 1 31 31 H 1.08999 * 109.47090 * 55.00733 * 12 11 2 32 32 H 1.07997 * 119.99907 * 359.97438 * 14 13 12 33 33 H 1.07998 * 119.99830 * 180.23155 * 15 14 13 34 34 H 1.07993 * 120.00118 * 179.72761 * 16 15 14 35 35 H 1.08004 * 119.99684 * 179.97438 * 17 16 15 36 36 H 1.08005 * 120.00251 * 359.97438 * 18 13 12 37 37 H 1.08003 * 119.99824 * 0.02562 * 20 19 12 38 38 H 1.07997 * 120.00501 * 180.23170 * 21 20 19 39 39 H 1.07999 * 120.00096 * 179.72514 * 22 21 20 40 40 H 1.08002 * 119.99438 * 179.97438 * 23 22 21 41 41 H 1.07997 * 119.99817 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1795 1.2149 -0.3240 5 6 1.5200 2.3508 0.4165 6 7 0.3531 2.2879 1.0220 7 14 2.3290 4.0079 0.1178 8 1 3.6265 3.8073 -0.5763 9 1 1.4411 4.8472 -0.7263 10 1 2.5623 4.6865 1.4180 11 6 2.1976 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 6 1.1378 -2.0082 -2.1171 14 6 0.2470 -2.8901 -1.5344 15 6 -0.9609 -3.1601 -2.1500 16 6 -1.2734 -2.5562 -3.3536 17 6 -0.3803 -1.6782 -3.9388 18 6 0.8254 -1.4043 -3.3206 19 6 3.3106 -2.9485 -1.4456 20 6 4.4393 -3.0059 -2.2417 21 6 5.2292 -4.1403 -2.2402 22 6 4.8846 -5.2214 -1.4506 23 6 3.7530 -5.1660 -0.6585 24 6 2.9663 -4.0294 -0.6557 25 1 -0.3633 0.0887 1.0239 26 1 -0.3634 0.8423 -0.5887 27 1 -0.3634 -0.9310 -0.4350 28 1 -0.0867 3.1018 1.3134 29 1 1.6085 -2.0286 0.5130 30 1 3.1499 -1.1385 0.5132 31 1 2.9641 -0.9123 -1.9820 32 1 0.4933 -3.3655 -0.5965 33 1 -1.6584 -3.8462 -1.6929 34 1 -2.2152 -2.7705 -3.8367 35 1 -0.6244 -1.2067 -4.8794 36 1 1.5231 -0.7183 -3.7778 37 1 4.7063 -2.1628 -2.8616 38 1 6.1131 -4.1838 -2.8592 39 1 5.4993 -6.1095 -1.4527 40 1 3.4836 -6.0108 -0.0419 41 1 2.0821 -3.9863 -0.0372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207525519.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:28 Heat of formation + Delta-G solvation = 73.550621 kcal Electronic energy + Delta-G solvation = -21860.728328 eV Core-core repulsion = 18898.985343 eV Total energy + Delta-G solvation = -2961.742985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.82521 -38.33483 -35.82718 -33.54128 -30.93458 -30.74297 -30.41152 -29.90046 -27.41575 -25.70278 -24.14518 -22.73097 -21.86260 -21.71654 -20.98223 -19.44014 -16.82107 -16.67373 -16.30823 -15.31448 -14.91609 -14.70974 -14.43837 -14.25525 -13.65325 -13.59814 -13.27217 -13.01262 -12.89450 -12.71436 -12.24513 -12.14712 -11.90234 -11.45480 -11.18589 -10.96158 -10.84085 -10.70291 -10.62465 -10.47769 -10.31704 -10.01158 -9.82697 -9.78768 -8.72792 -8.62263 -8.46635 -8.37853 -8.15022 -6.68282 -5.65542 -3.10334 1.55029 1.59432 1.83986 1.87102 3.39926 3.46959 3.48736 3.99324 4.23785 4.53645 4.98066 5.08586 5.15775 5.24213 5.29240 5.30748 5.39682 5.48786 5.49936 5.66042 5.72193 5.82579 5.90637 5.93758 6.04390 6.16893 6.21272 6.27098 6.45038 6.45816 6.60826 6.66152 6.68297 6.76534 6.88092 6.89989 6.95042 6.97940 7.19653 7.21259 7.44830 7.54756 7.80100 7.90057 8.44685 9.30431 9.94120 10.42075 11.38442 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.006227 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.609112 B = 4495.115900 C = 5604.427226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.596 5.596 3 C -0.251 4.251 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.901 3.099 8 H -0.279 1.279 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.165 3.835 12 C -0.044 4.044 13 C -0.032 4.032 14 C -0.113 4.113 15 C -0.122 4.122 16 C -0.135 4.135 17 C -0.121 4.121 18 C -0.111 4.111 19 C -0.053 4.053 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.135 4.135 23 C -0.120 4.120 24 C -0.115 4.115 25 H 0.022 0.978 26 H 0.041 0.959 27 H 0.007 0.993 28 H 0.250 0.750 29 H 0.039 0.961 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.939 -14.106 -7.330 16.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.317 5.317 3 C -0.380 4.380 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.554 5.554 7 Si 0.732 3.268 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.037 3.963 12 C -0.066 4.066 13 C -0.032 4.032 14 C -0.131 4.131 15 C -0.140 4.140 16 C -0.153 4.153 17 C -0.139 4.139 18 C -0.129 4.129 19 C -0.054 4.054 20 C -0.136 4.136 21 C -0.139 4.139 22 C -0.153 4.153 23 C -0.139 4.139 24 C -0.133 4.133 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.025 0.975 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.809 -13.933 -7.244 15.953 hybrid contribution 0.317 1.099 -0.148 1.154 sum 3.126 -12.833 -7.392 15.136 Atomic orbital electron populations 1.20875 0.82289 0.96074 0.98902 1.43863 1.01976 1.00309 1.85570 1.19244 0.96553 0.85254 1.36993 0.91399 1.24953 0.97469 0.98254 0.99035 1.70107 1.16628 1.26418 1.42241 0.86227 0.78613 0.84555 0.77422 1.20400 1.21730 1.21806 1.20755 0.96261 0.88737 0.90556 1.20169 0.91238 0.93475 1.01697 1.19588 0.95301 0.94595 0.93709 1.20964 0.94032 0.98491 0.99593 1.20997 0.96786 1.00397 0.95844 1.20963 0.99263 0.98618 0.96433 1.21019 0.94461 0.98510 0.99872 1.21002 0.97063 0.99437 0.95364 1.19954 0.94988 0.95236 0.95192 1.21097 0.95118 0.98128 0.99257 1.21067 0.99526 0.93817 0.99516 1.21034 0.97672 0.98517 0.98067 1.21090 0.95426 0.97984 0.99351 1.21119 0.99802 0.93078 0.99285 0.95957 0.93992 0.97478 0.93945 0.94297 0.93128 0.89678 0.86535 0.86797 0.86949 0.86822 0.86606 0.86298 0.86590 0.86732 0.86516 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.11 8.52 59.85 0.51 4.62 16 2 N -0.60 -14.87 2.81 -181.12 -0.51 -15.38 16 3 C -0.25 -6.89 9.69 -15.06 -0.15 -7.03 16 4 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 5 C 0.00 0.02 5.14 -17.43 -0.09 -0.07 16 6 N -0.91 -26.87 10.47 55.49 0.58 -26.29 16 7 Si 0.90 22.10 29.57 -169.99 -5.03 17.08 16 8 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 C 0.17 3.37 4.58 -4.04 -0.02 3.36 16 12 C -0.04 -0.78 2.46 -92.92 -0.23 -1.01 16 13 C -0.03 -0.55 3.50 -104.63 -0.37 -0.92 16 14 C -0.11 -1.82 6.43 -39.58 -0.25 -2.07 16 15 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 16 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 17 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 18 C -0.11 -1.87 9.67 -39.58 -0.38 -2.25 16 19 C -0.05 -0.82 4.78 -104.62 -0.50 -1.32 16 20 C -0.12 -1.66 9.67 -39.58 -0.38 -2.05 16 21 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 22 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 23 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 24 C -0.11 -1.62 8.33 -39.59 -0.33 -1.95 16 25 H 0.02 0.61 7.43 -51.93 -0.39 0.22 16 26 H 0.04 1.16 7.10 -51.93 -0.37 0.79 16 27 H 0.01 0.15 5.09 -51.93 -0.26 -0.11 16 28 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.04 0.75 5.86 -51.93 -0.30 0.44 16 30 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16 31 H 0.08 1.61 7.66 -51.93 -0.40 1.21 16 32 H 0.12 1.76 5.08 -52.49 -0.27 1.49 16 33 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 36 H 0.12 1.89 7.96 -52.48 -0.42 1.47 16 37 H 0.12 1.56 7.97 -52.48 -0.42 1.15 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.12 1.65 5.17 -52.49 -0.27 1.38 16 LS Contribution 329.09 15.07 4.96 4.96 Total: -1.00 -30.48 329.09 -10.17 -40.65 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.60 Total: 2.22 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -4.58 Total: -23.24 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.07 Total: -41.67 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.48 -10.17 -40.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207525519.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.200 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds