Wall clock time and date at job start Tue Mar 31 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36937 * 119.99710 * 2 1 4 4 H 1.07999 * 119.99990 * 200.26767 * 3 2 1 5 5 C 1.38813 * 120.00039 * 20.27348 * 3 2 1 6 6 N 1.31617 * 120.00324 * 11.57430 * 5 3 2 7 7 Si 1.86800 * 119.99887 * 191.57130 * 5 3 2 8 8 H 1.48504 * 109.47135 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.47012 * 119.99861 * 7 5 3 10 10 H 1.48502 * 109.47561 * 240.00028 * 7 5 3 11 11 C 1.46500 * 120.00155 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46921 * 89.99286 * 11 2 1 13 13 C 1.50700 * 109.47442 * 294.99906 * 12 11 2 14 14 C 1.38235 * 119.99867 * 306.66807 * 13 12 11 15 15 C 1.38236 * 119.99760 * 179.76599 * 14 13 12 16 16 C 1.38237 * 120.00046 * 0.50642 * 15 14 13 17 17 C 1.38239 * 119.99704 * 359.74120 * 16 15 14 18 18 C 1.38231 * 119.99764 * 126.94012 * 13 12 11 19 19 C 1.50703 * 109.46767 * 174.99932 * 12 11 2 20 20 C 1.38236 * 120.00055 * 230.04812 * 19 12 11 21 21 C 1.38233 * 120.00078 * 179.76752 * 20 19 12 22 22 C 1.38243 * 119.99769 * 0.50723 * 21 20 19 23 23 C 1.38239 * 119.99745 * 359.74749 * 22 21 20 24 24 C 1.38230 * 120.00082 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.46822 * 274.95362 * 1 2 3 26 26 H 1.09000 * 109.47559 * 34.95011 * 1 2 3 27 27 H 1.08996 * 109.47474 * 154.95558 * 1 2 3 28 28 H 0.96993 * 120.00387 * 179.97438 * 6 5 3 29 29 H 1.09001 * 109.47068 * 329.99671 * 11 2 1 30 30 H 1.08992 * 109.46680 * 209.99376 * 11 2 1 31 31 H 1.08999 * 109.47090 * 55.00733 * 12 11 2 32 32 H 1.07997 * 119.99907 * 359.97438 * 14 13 12 33 33 H 1.07998 * 119.99830 * 180.23155 * 15 14 13 34 34 H 1.07993 * 120.00118 * 179.72761 * 16 15 14 35 35 H 1.08004 * 119.99684 * 179.97438 * 17 16 15 36 36 H 1.08005 * 120.00251 * 359.97438 * 18 13 12 37 37 H 1.08003 * 119.99824 * 0.02562 * 20 19 12 38 38 H 1.07997 * 120.00501 * 180.23170 * 21 20 19 39 39 H 1.07999 * 120.00096 * 179.72514 * 22 21 20 40 40 H 1.08002 * 119.99438 * 179.97438 * 23 22 21 41 41 H 1.07997 * 119.99817 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1795 1.2149 -0.3240 5 6 1.5200 2.3508 0.4165 6 7 0.3531 2.2879 1.0220 7 14 2.3290 4.0079 0.1178 8 1 3.6265 3.8073 -0.5763 9 1 1.4411 4.8472 -0.7263 10 1 2.5623 4.6865 1.4180 11 6 2.1976 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 6 1.1378 -2.0082 -2.1171 14 6 0.2470 -2.8901 -1.5344 15 6 -0.9609 -3.1601 -2.1500 16 6 -1.2734 -2.5562 -3.3536 17 6 -0.3803 -1.6782 -3.9388 18 6 0.8254 -1.4043 -3.3206 19 6 3.3106 -2.9485 -1.4456 20 6 4.4393 -3.0059 -2.2417 21 6 5.2292 -4.1403 -2.2402 22 6 4.8846 -5.2214 -1.4506 23 6 3.7530 -5.1660 -0.6585 24 6 2.9663 -4.0294 -0.6557 25 1 -0.3633 0.0887 1.0239 26 1 -0.3634 0.8423 -0.5887 27 1 -0.3634 -0.9310 -0.4350 28 1 -0.0867 3.1018 1.3134 29 1 1.6085 -2.0286 0.5130 30 1 3.1499 -1.1385 0.5132 31 1 2.9641 -0.9123 -1.9820 32 1 0.4933 -3.3655 -0.5965 33 1 -1.6584 -3.8462 -1.6929 34 1 -2.2152 -2.7705 -3.8367 35 1 -0.6244 -1.2067 -4.8794 36 1 1.5231 -0.7183 -3.7778 37 1 4.7063 -2.1628 -2.8616 38 1 6.1131 -4.1838 -2.8592 39 1 5.4993 -6.1095 -1.4527 40 1 3.4836 -6.0108 -0.0419 41 1 2.0821 -3.9863 -0.0372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207525519.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:27 Heat of formation + Delta-G solvation = 59.821611 kcal Electronic energy + Delta-G solvation = -21861.323662 eV Core-core repulsion = 18898.985343 eV Total energy + Delta-G solvation = -2962.338319 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.03671 -39.43121 -37.56064 -35.09897 -32.74527 -31.94567 -31.53370 -31.04481 -28.95893 -27.79156 -25.65779 -23.98667 -22.98695 -22.85482 -22.64226 -20.80483 -18.72056 -17.74906 -17.65737 -16.88983 -16.38058 -15.94746 -15.74072 -15.45064 -15.32167 -15.10361 -14.71291 -14.38818 -14.11520 -13.95272 -13.77174 -13.43753 -13.25111 -13.07338 -12.80491 -12.72544 -12.42664 -12.24713 -12.13215 -11.94850 -11.87918 -11.77871 -11.52404 -11.38209 -10.65632 -9.74873 -9.67278 -9.64581 -9.35897 -8.72113 -7.79625 -5.26648 0.47361 0.57047 0.63705 0.69371 1.43930 1.45000 1.55199 2.50457 2.94509 3.03842 3.32430 3.63695 3.88714 4.03530 4.13332 4.18500 4.19355 4.29518 4.29665 4.41469 4.46324 4.55962 4.70549 4.77073 4.81417 4.85367 4.94937 4.96957 5.11465 5.17745 5.26442 5.26682 5.30790 5.44104 5.61793 5.65152 5.68075 5.69694 5.71983 5.74479 5.80536 5.93897 6.20163 6.25949 6.33266 7.17352 7.89965 8.33224 9.22820 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.006227 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.609112 B = 4495.115900 C = 5604.427226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.187 3.813 2 N -0.609 5.609 3 C -0.255 4.255 4 H 0.069 0.931 5 C -0.055 4.055 6 N -0.941 5.941 7 Si 0.965 3.035 8 H -0.267 1.267 9 H -0.293 1.293 10 H -0.292 1.292 11 C 0.168 3.832 12 C -0.027 4.027 13 C -0.050 4.050 14 C -0.126 4.126 15 C -0.124 4.124 16 C -0.135 4.135 17 C -0.126 4.126 18 C -0.136 4.136 19 C -0.073 4.073 20 C -0.134 4.134 21 C -0.122 4.122 22 C -0.131 4.131 23 C -0.122 4.122 24 C -0.126 4.126 25 H -0.007 1.007 26 H 0.009 0.991 27 H 0.035 0.965 28 H 0.246 0.754 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.061 0.939 32 H 0.123 0.877 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.135 0.865 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.484 -16.175 -8.201 18.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.332 5.332 3 C -0.386 4.386 4 H 0.087 0.913 5 C -0.249 4.249 6 N -0.588 5.588 7 Si 0.793 3.207 8 H -0.191 1.191 9 H -0.220 1.220 10 H -0.219 1.219 11 C 0.042 3.958 12 C -0.048 4.048 13 C -0.050 4.050 14 C -0.144 4.144 15 C -0.142 4.142 16 C -0.153 4.153 17 C -0.144 4.144 18 C -0.154 4.154 19 C -0.074 4.074 20 C -0.152 4.152 21 C -0.140 4.140 22 C -0.149 4.149 23 C -0.140 4.140 24 C -0.144 4.144 25 H 0.012 0.988 26 H 0.028 0.972 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.141 0.859 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.152 0.848 36 H 0.127 0.873 37 H 0.136 0.864 38 H 0.159 0.841 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.388 -16.040 -8.131 18.300 hybrid contribution 0.183 1.600 0.080 1.613 sum 3.571 -14.440 -8.052 16.914 Atomic orbital electron populations 1.20515 0.82676 0.95985 0.96646 1.44020 1.01986 1.01280 1.85883 1.19545 0.96699 0.86448 1.35872 0.91345 1.25697 0.98257 1.01512 0.99467 1.70271 1.18045 1.26805 1.43718 0.85231 0.78060 0.80332 0.77034 1.19143 1.21952 1.21877 1.20853 0.95248 0.87117 0.92630 1.19758 0.92147 0.94068 0.98803 1.19646 0.95414 0.95659 0.94272 1.21122 0.94592 0.98590 1.00111 1.21380 0.96559 1.00381 0.95881 1.21364 1.00108 0.97600 0.96239 1.21325 0.93833 0.98588 1.00633 1.21148 0.98145 1.00110 0.95977 1.19814 0.95579 0.94882 0.97099 1.21227 0.95265 0.99194 0.99525 1.21383 0.99863 0.93134 0.99632 1.21453 0.97449 0.99236 0.96739 1.21422 0.95148 0.97966 0.99419 1.21203 1.00375 0.93485 0.99331 0.98822 0.97230 0.94678 0.94475 0.93102 0.94236 0.92021 0.85948 0.84063 0.83911 0.84759 0.87287 0.86405 0.84101 0.83602 0.83923 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.68 8.52 127.77 1.09 10.77 16 2 N -0.61 -31.26 2.81 -726.93 -2.04 -33.30 16 3 C -0.26 -14.36 9.69 84.03 0.81 -13.55 16 4 H 0.07 3.76 7.86 -2.91 -0.02 3.74 16 5 C -0.05 -3.16 5.14 84.86 0.44 -2.73 16 6 N -0.94 -57.32 10.47 21.65 0.23 -57.10 16 7 Si 0.96 46.34 29.57 68.60 2.03 48.36 16 8 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 9 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 10 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 11 C 0.17 7.01 4.58 86.38 0.40 7.41 16 12 C -0.03 -0.96 2.46 -12.28 -0.03 -0.99 16 13 C -0.05 -1.73 3.50 -19.87 -0.07 -1.80 16 14 C -0.13 -3.95 6.43 22.27 0.14 -3.81 16 15 C -0.12 -3.39 10.05 22.27 0.22 -3.17 16 16 C -0.14 -3.58 10.05 22.27 0.22 -3.35 16 17 C -0.13 -3.68 10.05 22.27 0.22 -3.46 16 18 C -0.14 -4.64 9.67 22.27 0.22 -4.42 16 19 C -0.07 -2.24 4.78 -19.87 -0.09 -2.34 16 20 C -0.13 -3.72 9.67 22.27 0.22 -3.51 16 21 C -0.12 -2.75 10.05 22.27 0.22 -2.52 16 22 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 23 C -0.12 -2.70 10.05 22.27 0.22 -2.47 16 24 C -0.13 -3.42 8.33 22.27 0.19 -3.24 16 25 H -0.01 -0.37 7.43 -2.38 -0.02 -0.39 16 26 H 0.01 0.52 7.10 -2.39 -0.02 0.50 16 27 H 0.03 1.58 5.09 -2.39 -0.01 1.57 16 28 H 0.25 14.55 8.31 -92.71 -0.77 13.77 16 29 H 0.05 1.98 5.86 -2.39 -0.01 1.96 16 30 H 0.04 1.71 8.04 -2.39 -0.02 1.69 16 31 H 0.06 2.46 7.66 -2.39 -0.02 2.44 16 32 H 0.12 3.58 5.08 -2.91 -0.01 3.57 16 33 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 35 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 36 H 0.11 3.72 7.96 -2.91 -0.02 3.70 16 37 H 0.12 3.16 7.97 -2.91 -0.02 3.14 16 38 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 41 H 0.12 3.20 5.17 -2.91 -0.02 3.19 16 Total: -1.00 -66.86 329.09 5.86 -61.00 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 1.01 Total: 16.66 kcal Atomic # 6 Polarization: -40.27 SS G_CDS: 4.64 Total: -35.62 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -1.82 Total: -90.40 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -66.86 5.86 -61.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207525519.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.819 kcal (2) G-P(sol) polarization free energy of solvation -66.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds