Wall clock time and date at job start Tue Mar 31 2020 05:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.47029 * 2 1 4 4 C 1.38099 * 120.04083 * 309.36534 * 3 2 1 5 5 C 1.38288 * 120.07978 * 179.70355 * 4 3 2 6 6 C 1.38323 * 120.16050 * 0.02562 * 5 4 3 7 7 C 1.38066 * 120.07906 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.03978 * 180.02562 * 7 6 5 9 9 C 1.38949 * 120.03935 * 129.08973 * 3 2 1 10 10 N 1.39599 * 120.08126 * 0.25510 * 9 3 2 11 11 C 1.38816 * 120.00040 * 269.07958 * 10 9 3 12 12 C 1.39601 * 119.84610 * 77.53467 * 11 10 9 13 13 C 1.36312 * 120.15783 * 179.72143 * 12 11 10 14 14 C 1.40904 * 119.83870 * 0.55445 * 13 12 11 15 15 C 1.41100 * 120.15498 * 179.70053 * 14 13 12 16 16 H 1.08006 * 120.00036 * 28.93035 * 15 14 13 17 17 C 1.39852 * 120.00349 * 208.93215 * 15 14 13 18 18 N 1.30913 * 119.99554 * 13.70075 * 17 15 14 19 19 Si 1.86795 * 120.00001 * 193.69941 * 17 15 14 20 20 H 1.48494 * 109.47195 * 60.00304 * 19 17 15 21 21 H 1.48505 * 109.46682 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47623 * 299.99786 * 19 17 15 23 23 C 1.40903 * 119.69169 * 359.72202 * 14 13 12 24 24 C 1.36308 * 119.84212 * 0.02562 * 23 14 13 25 25 H 1.08995 * 109.47215 * 58.53140 * 1 2 3 26 26 H 1.08998 * 109.47292 * 178.53176 * 1 2 3 27 27 H 1.09000 * 109.46825 * 298.53017 * 1 2 3 28 28 H 1.09001 * 109.46754 * 239.99736 * 2 1 3 29 29 H 1.08998 * 109.46808 * 120.00505 * 2 1 3 30 30 H 1.07997 * 119.96203 * 359.72502 * 4 3 2 31 31 H 1.08002 * 119.91640 * 180.02562 * 5 4 3 32 32 H 1.08001 * 119.96146 * 179.97438 * 6 5 4 33 33 H 1.09005 * 109.46841 * 95.13907 * 8 7 6 34 34 H 1.09003 * 109.46973 * 215.13980 * 8 7 6 35 35 H 1.08998 * 109.47202 * 335.14340 * 8 7 6 36 36 H 0.96997 * 120.00418 * 89.07416 * 10 9 3 37 37 H 1.07996 * 119.92110 * 359.97438 * 12 11 10 38 38 H 1.08004 * 120.08343 * 180.30197 * 13 12 11 39 39 H 0.97002 * 119.99633 * 180.02562 * 18 17 15 40 40 H 1.08002 * 120.07624 * 179.97438 * 23 14 13 41 41 H 1.08000 * 119.92280 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 1.5479 2.3253 -0.9242 5 6 2.0037 3.6309 -0.9211 6 6 2.9464 4.0356 0.0068 7 6 3.4352 3.1368 0.9338 8 6 4.4618 3.5788 1.9447 9 6 2.9793 1.8238 0.9336 10 7 3.4710 0.9123 1.8697 11 6 2.8472 0.7789 3.1026 12 6 1.6571 0.0563 3.2046 13 6 1.0422 -0.0835 4.4130 14 6 1.6043 0.5134 5.5589 15 6 0.9701 0.3783 6.8121 16 1 0.3734 -0.4967 7.0238 17 6 1.1139 1.3775 7.7800 18 7 1.6011 2.5460 7.4470 19 14 0.6108 1.0445 9.5478 20 1 1.4048 -0.0904 10.0831 21 1 0.8620 2.2553 10.3703 22 1 -0.8338 0.7041 9.5958 23 6 2.8026 1.2463 5.4475 24 6 3.4095 1.3736 4.2336 25 1 -0.3633 0.5364 -0.8765 26 1 -0.3634 -1.0273 -0.0263 27 1 -0.3633 0.4908 0.9029 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 0.8119 2.0128 -1.6502 31 1 1.6228 4.3362 -1.6448 32 1 3.3005 5.0559 0.0061 33 1 3.9615 3.8605 2.8712 34 1 5.1549 2.7605 2.1402 35 1 5.0114 4.4350 1.5537 36 1 4.2484 0.3721 1.6587 37 1 1.2248 -0.3966 2.3246 38 1 0.1241 -0.6469 4.4914 39 1 1.7012 3.2389 8.1184 40 1 3.2387 1.7068 6.3217 41 1 4.3278 1.9354 4.1467 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210874224.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:58 Heat of formation + Delta-G solvation = 41.109943 kcal Electronic energy + Delta-G solvation = -21545.301014 eV Core-core repulsion = 18582.151296 eV Total energy + Delta-G solvation = -2963.149718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.64204 -37.54326 -34.81980 -34.31061 -33.04822 -31.00125 -29.56375 -29.30988 -27.73942 -26.34699 -24.47316 -23.51262 -21.54974 -20.79098 -20.06760 -19.81509 -17.32609 -16.71295 -16.09752 -15.47567 -15.13409 -14.92285 -14.25633 -13.94926 -13.42444 -13.33270 -13.17161 -13.04976 -12.60436 -12.28562 -12.08217 -11.92638 -11.72310 -11.59548 -11.33222 -11.21830 -11.09228 -11.08712 -10.78206 -10.60523 -10.54748 -10.35757 -9.72745 -9.43581 -9.14999 -8.21223 -8.11389 -7.67592 -7.49906 -7.04781 -6.70230 -4.31980 1.72138 1.73408 2.77944 3.07472 3.10445 3.13798 3.20665 3.95203 4.07090 4.52760 4.69037 5.06513 5.15083 5.25434 5.49350 5.55825 5.65939 5.67838 5.70928 5.81906 5.96184 6.06322 6.09201 6.16130 6.23547 6.29285 6.36206 6.41065 6.54323 6.69107 6.80468 6.86459 6.92631 7.07123 7.12063 7.20316 7.31919 7.38588 7.62416 7.65988 8.06107 8.13793 8.29955 8.57087 8.65214 8.78108 8.91680 9.11423 10.23787 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021940 B = 0.004671 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.885392 B = 5993.219190 C = 6611.826367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.088 4.088 4 C -0.124 4.124 5 C -0.130 4.130 6 C -0.126 4.126 7 C -0.091 4.091 8 C -0.104 4.104 9 C 0.187 3.813 10 N -0.733 5.733 11 C 0.029 3.971 12 C -0.103 4.103 13 C -0.220 4.220 14 C 0.111 3.889 15 C -0.464 4.464 16 H 0.076 0.924 17 C 0.075 3.925 18 N -0.799 5.799 19 Si 0.908 3.092 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.157 4.157 24 C -0.104 4.104 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.386 0.614 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.280 0.720 40 H 0.115 0.885 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.357 0.469 -11.447 11.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 C -0.091 4.091 4 C -0.143 4.143 5 C -0.148 4.148 6 C -0.145 4.145 7 C -0.093 4.093 8 C -0.161 4.161 9 C 0.093 3.907 10 N -0.375 5.375 11 C -0.063 4.063 12 C -0.123 4.123 13 C -0.240 4.240 14 C 0.109 3.891 15 C -0.494 4.494 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.425 5.425 19 Si 0.733 3.267 20 H -0.189 1.189 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.177 4.177 24 C -0.124 4.124 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.222 0.778 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.132 0.868 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.260 0.802 -11.273 11.526 hybrid contribution -0.149 0.000 0.744 0.759 sum 2.110 0.803 -10.529 10.768 Atomic orbital electron populations 1.21786 0.95360 1.01259 1.02052 1.20661 0.95779 0.93326 1.03154 1.20360 0.96684 0.96222 0.95789 1.20805 1.00697 0.93421 0.99364 1.20966 0.98435 0.95986 0.99452 1.20863 0.98602 0.98805 0.96183 1.20431 0.98380 0.93795 0.96684 1.20674 0.97015 1.00568 0.97803 1.17323 0.94340 0.88972 0.90020 1.40572 1.36228 1.46706 1.13948 1.16806 0.97785 1.07732 0.84003 1.20920 0.96011 0.98698 0.96628 1.20686 1.01049 1.09557 0.92683 1.17643 0.90142 0.89272 0.92086 1.19477 1.27586 1.04778 0.97536 0.90633 1.25872 0.93348 0.94196 1.00794 1.69844 1.34454 1.02638 1.35559 0.86370 0.79972 0.78737 0.81626 1.18908 1.20400 1.19089 1.20935 0.96201 1.04339 0.96237 1.20815 0.99076 0.98981 0.93531 0.93085 0.92854 0.92146 0.91953 0.88857 0.86744 0.86817 0.86763 0.90914 0.91415 0.92871 0.77788 0.88392 0.89173 0.90963 0.86759 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.18 37.16 0.34 -1.65 16 2 C -0.09 -1.33 5.65 -27.88 -0.16 -1.49 16 3 C -0.09 -1.40 5.47 -104.41 -0.57 -1.98 16 4 C -0.12 -1.78 9.16 -39.61 -0.36 -2.14 16 5 C -0.13 -1.79 10.04 -39.53 -0.40 -2.19 16 6 C -0.13 -1.85 9.67 -39.61 -0.38 -2.23 16 7 C -0.09 -1.49 5.90 -104.41 -0.62 -2.11 16 8 C -0.10 -1.60 8.95 36.01 0.32 -1.27 16 9 C 0.19 3.23 5.85 -83.78 -0.49 2.74 16 10 N -0.73 -13.00 3.15 -8.30 -0.03 -13.02 16 11 C 0.03 0.62 5.91 -83.68 -0.49 0.12 16 12 C -0.10 -2.27 9.45 -39.77 -0.38 -2.65 16 13 C -0.22 -5.36 9.74 -39.27 -0.38 -5.74 16 14 C 0.11 2.94 5.54 -106.79 -0.59 2.34 16 15 C -0.46 -12.29 9.03 -37.89 -0.34 -12.64 16 16 H 0.08 1.92 7.88 -52.48 -0.41 1.51 16 17 C 0.07 1.88 5.19 -17.34 -0.09 1.79 16 18 N -0.80 -20.81 11.00 55.54 0.61 -20.20 16 19 Si 0.91 18.77 29.58 -169.99 -5.03 13.74 16 20 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 C -0.16 -4.03 8.60 -39.27 -0.34 -4.37 16 24 C -0.10 -2.37 9.65 -39.77 -0.38 -2.75 16 25 H 0.05 0.61 6.88 -51.93 -0.36 0.25 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.94 7.97 -51.93 -0.41 0.53 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.50 4.28 -51.93 -0.22 1.28 16 30 H 0.11 1.39 7.02 -52.49 -0.37 1.02 16 31 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 34 H 0.07 1.03 7.42 -51.93 -0.39 0.64 16 35 H 0.05 0.68 8.05 -51.93 -0.42 0.27 16 36 H 0.39 6.17 8.95 -40.82 -0.37 5.80 16 37 H 0.10 1.95 4.42 -52.49 -0.23 1.72 16 38 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 39 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 40 H 0.11 3.05 6.33 -52.49 -0.33 2.71 16 41 H 0.09 1.85 7.11 -52.49 -0.37 1.47 16 LS Contribution 331.00 15.07 4.99 4.99 Total: -1.00 -27.17 331.00 -10.31 -37.48 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -5.54 Total: 13.22 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: -5.31 Total: -36.20 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.59 Total: -33.22 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.17 -10.31 -37.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210874224.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.585 kcal (2) G-P(sol) polarization free energy of solvation -27.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds