Wall clock time and date at job start Tue Mar 31 2020 05:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.46855 * 2 1 4 4 C 1.38105 * 120.04064 * 300.84918 * 3 2 1 5 5 C 1.38287 * 120.07535 * 180.25576 * 4 3 2 6 6 C 1.38320 * 120.16372 * 359.76512 * 5 4 3 7 7 C 1.38066 * 120.08002 * 359.95841 * 6 5 4 8 8 C 1.50696 * 120.04192 * 180.02562 * 7 6 5 9 9 C 1.38948 * 120.03467 * 120.57493 * 3 2 1 10 10 N 1.39583 * 120.08468 * 359.97438 * 9 3 2 11 11 C 1.38684 * 120.00530 * 277.97858 * 10 9 3 12 12 C 1.38806 * 120.29758 * 68.24545 * 11 10 9 13 13 C 1.38118 * 120.01981 * 180.30413 * 12 11 10 14 14 C 1.38930 * 120.63479 * 359.44153 * 13 12 11 15 15 C 1.36422 * 120.60474 * 0.56570 * 14 13 12 16 16 C 1.40743 * 119.95312 * 359.71872 * 15 14 13 17 17 C 1.41014 * 120.30849 * 180.02562 * 16 15 14 18 18 H 1.08008 * 120.00085 * 149.07973 * 17 16 15 19 19 C 1.39911 * 120.00451 * 329.07777 * 17 16 15 20 20 N 1.30893 * 119.99288 * 345.81497 * 19 17 16 21 21 Si 1.86793 * 120.00519 * 165.81106 * 19 17 16 22 22 H 1.48497 * 109.47114 * 90.00110 * 21 19 17 23 23 H 1.48497 * 109.47618 * 210.00260 * 21 19 17 24 24 H 1.48506 * 109.47134 * 330.00391 * 21 19 17 25 25 H 1.09000 * 109.47349 * 184.48748 * 1 2 3 26 26 H 1.09007 * 109.47304 * 304.48647 * 1 2 3 27 27 H 1.09004 * 109.47504 * 64.48664 * 1 2 3 28 28 H 1.09004 * 109.46835 * 240.00278 * 2 1 3 29 29 H 1.08995 * 109.47486 * 120.00515 * 2 1 3 30 30 H 1.08003 * 119.96381 * 359.97438 * 4 3 2 31 31 H 1.07995 * 119.91814 * 179.74911 * 5 4 3 32 32 H 1.07994 * 119.96381 * 179.97438 * 6 5 4 33 33 H 1.09007 * 109.46664 * 263.55306 * 8 7 6 34 34 H 1.08996 * 109.47361 * 23.55067 * 8 7 6 35 35 H 1.09000 * 109.47110 * 143.55866 * 8 7 6 36 36 H 0.97001 * 119.99902 * 97.97346 * 10 9 3 37 37 H 1.07994 * 119.98779 * 0.02752 * 12 11 10 38 38 H 1.07998 * 119.68116 * 179.72493 * 13 12 11 39 39 H 1.07997 * 119.69889 * 180.30402 * 14 13 12 40 40 H 1.08006 * 120.02620 * 179.74799 * 15 14 13 41 41 H 0.97005 * 119.99539 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 1.6847 2.2770 -1.0264 5 6 2.1495 3.5795 -1.0299 6 6 2.9597 4.0310 -0.0037 7 6 3.3066 3.1824 1.0286 8 6 4.1889 3.6754 2.1464 9 6 2.8409 1.8727 1.0357 10 7 3.1892 1.0120 2.0779 11 6 2.3087 0.8039 3.1291 12 6 1.1166 0.1243 2.9200 13 6 0.2411 -0.0742 3.9696 14 6 0.5454 0.3907 5.2429 15 6 1.7097 1.0619 5.4774 16 6 2.6174 1.2834 4.4248 17 6 3.8233 1.9759 4.6588 18 1 4.7024 1.7413 4.0769 19 6 3.8810 2.9668 5.6448 20 7 2.7756 3.4477 6.1548 21 14 5.5355 3.6035 6.2335 22 1 5.9464 4.7603 5.3981 23 1 5.4254 4.0312 7.6513 24 1 6.5501 2.5251 6.1192 25 1 -0.3634 -1.0245 0.0804 26 1 -0.3634 0.5819 0.8471 27 1 -0.3634 0.4426 -0.9275 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.0528 1.9277 -1.8296 31 1 1.8794 4.2456 -1.8358 32 1 3.3212 5.0486 -0.0099 33 1 5.2225 3.3938 1.9445 34 1 4.1149 4.7606 2.2160 35 1 3.8677 3.2281 3.0870 36 1 4.0470 0.5593 2.0670 37 1 0.8717 -0.2454 1.9353 38 1 -0.6869 -0.5998 3.7998 39 1 -0.1480 0.2228 6.0537 40 1 1.9350 1.4228 6.4701 41 1 2.8156 4.1345 6.8387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210875944.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:01 Heat of formation + Delta-G solvation = 54.135940 kcal Electronic energy + Delta-G solvation = -22350.369383 eV Core-core repulsion = 19387.784514 eV Total energy + Delta-G solvation = -2962.584868 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.55665 -37.49255 -34.50519 -34.12148 -33.46131 -30.85244 -29.53971 -29.28524 -27.13949 -25.81459 -25.02113 -23.43290 -21.53990 -20.71086 -19.84301 -19.60725 -17.38867 -16.46920 -16.05282 -15.29865 -14.95972 -14.78358 -14.37788 -13.89193 -13.50109 -13.21088 -12.87154 -12.79364 -12.55594 -12.18215 -12.06110 -11.70260 -11.60713 -11.45698 -11.19789 -11.05134 -10.90848 -10.85539 -10.68045 -10.46226 -10.35941 -10.23998 -9.61292 -9.55826 -9.11732 -8.10228 -7.96479 -7.64936 -7.30392 -6.82925 -6.71966 -4.28447 1.90930 1.94857 2.79183 3.02354 3.07169 3.10493 3.22518 3.93580 4.26932 4.65380 4.77181 5.22450 5.30022 5.49410 5.59731 5.64520 5.70323 5.80802 5.91255 6.04345 6.18052 6.24883 6.27255 6.39769 6.41702 6.48208 6.50690 6.58388 6.65869 6.73289 6.98561 7.05135 7.08992 7.18290 7.27401 7.35912 7.43772 7.51844 7.62702 7.80811 7.98042 8.12684 8.30519 8.49990 8.77822 8.85640 8.96598 9.22628 10.23451 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015638 B = 0.007728 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.064199 B = 3622.297289 C = 4966.099601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.092 4.092 4 C -0.128 4.128 5 C -0.132 4.132 6 C -0.130 4.130 7 C -0.077 4.077 8 C -0.148 4.148 9 C 0.189 3.811 10 N -0.721 5.721 11 C 0.056 3.944 12 C -0.133 4.133 13 C -0.228 4.228 14 C -0.115 4.115 15 C -0.149 4.149 16 C 0.104 3.896 17 C -0.452 4.452 18 H 0.080 0.920 19 C 0.076 3.924 20 N -0.798 5.798 21 Si 0.896 3.104 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.262 1.262 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.137 0.863 36 H 0.388 0.612 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.150 -1.487 -8.573 8.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.094 4.094 4 C -0.147 4.147 5 C -0.150 4.150 6 C -0.149 4.149 7 C -0.079 4.079 8 C -0.204 4.204 9 C 0.095 3.905 10 N -0.360 5.360 11 C -0.038 4.038 12 C -0.153 4.153 13 C -0.248 4.248 14 C -0.133 4.133 15 C -0.169 4.169 16 C 0.100 3.900 17 C -0.482 4.482 18 H 0.098 0.902 19 C -0.141 4.141 20 N -0.424 5.424 21 Si 0.721 3.279 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.186 1.186 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.154 0.846 36 H 0.225 0.775 37 H 0.137 0.863 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.129 0.871 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.081 -1.222 -8.383 8.472 hybrid contribution 0.874 0.586 0.282 1.089 sum 0.793 -0.636 -8.101 8.164 Atomic orbital electron populations 1.21869 0.95428 1.01411 1.02015 1.20759 0.95669 0.93601 1.03101 1.20296 0.98669 0.96009 0.94455 1.20707 1.01476 0.93826 0.98675 1.20925 0.99424 0.95870 0.98817 1.20909 1.00037 0.99203 0.94753 1.20562 0.98366 0.93328 0.95673 1.21486 0.97280 1.00236 1.01397 1.17300 0.95682 0.89120 0.88350 1.40367 1.20504 1.53133 1.22000 1.17399 0.92775 1.06734 0.86847 1.21691 0.95797 0.99105 0.98724 1.20278 1.00288 1.10268 0.93990 1.20439 0.97243 1.00005 0.95636 1.20891 0.95503 1.01468 0.99080 1.17882 0.93092 0.88905 0.90120 1.19172 0.97149 1.16312 1.15608 0.90213 1.25826 0.97445 0.95918 0.94864 1.69838 1.28288 1.21951 1.22274 0.86496 0.83017 0.79771 0.78607 1.19441 1.20251 1.18552 0.92863 0.91614 0.93178 0.92120 0.88513 0.87061 0.87105 0.87026 0.92897 0.93740 0.84570 0.77529 0.86258 0.89754 0.89794 0.87088 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.45 37.16 0.31 -1.82 16 2 C -0.09 -1.45 5.27 -27.88 -0.15 -1.60 16 3 C -0.09 -1.59 5.30 -104.41 -0.55 -2.14 16 4 C -0.13 -2.01 9.26 -39.61 -0.37 -2.37 16 5 C -0.13 -2.04 10.04 -39.53 -0.40 -2.44 16 6 C -0.13 -2.22 9.67 -39.61 -0.38 -2.60 16 7 C -0.08 -1.49 5.90 -104.40 -0.62 -2.11 16 8 C -0.15 -2.94 9.65 36.00 0.35 -2.59 16 9 C 0.19 3.67 5.80 -83.78 -0.49 3.18 16 10 N -0.72 -14.46 2.71 -8.04 -0.02 -14.48 16 11 C 0.06 1.27 5.97 -83.28 -0.50 0.77 16 12 C -0.13 -2.90 8.58 -39.42 -0.34 -3.23 16 13 C -0.23 -5.03 10.03 -39.37 -0.40 -5.42 16 14 C -0.11 -2.65 9.96 -39.98 -0.40 -3.05 16 15 C -0.15 -3.76 8.59 -39.29 -0.34 -4.10 16 16 C 0.10 2.60 5.51 -106.63 -0.59 2.01 16 17 C -0.45 -11.02 5.45 -37.90 -0.21 -11.23 16 18 H 0.08 1.88 7.42 -52.48 -0.39 1.49 16 19 C 0.08 1.83 4.98 -17.33 -0.09 1.75 16 20 N -0.80 -20.08 11.19 55.55 0.62 -19.46 16 21 Si 0.90 18.23 29.58 -169.99 -5.03 13.21 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 1.08 7.00 -51.92 -0.36 0.72 16 27 H 0.05 0.63 7.51 -51.93 -0.39 0.24 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.10 1.64 4.60 -51.93 -0.24 1.40 16 30 H 0.11 1.48 7.58 -52.48 -0.40 1.08 16 31 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 32 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.04 0.83 8.04 -51.93 -0.42 0.41 16 35 H 0.14 3.10 3.27 -51.93 -0.17 2.93 16 36 H 0.39 7.31 8.95 -40.82 -0.37 6.94 16 37 H 0.12 2.29 2.24 -52.49 -0.12 2.17 16 38 H 0.08 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.08 1.76 8.06 -52.49 -0.42 1.33 16 40 H 0.11 2.89 6.52 -52.48 -0.34 2.55 16 41 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 LS Contribution 321.29 15.07 4.84 4.84 Total: -1.00 -25.90 321.29 -10.01 -35.91 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -5.29 Total: 16.98 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: -5.13 Total: -36.99 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.60 Total: -33.94 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -25.90 -10.01 -35.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210875944.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.041 kcal (2) G-P(sol) polarization free energy of solvation -25.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds