Wall clock time and date at job start Tue Mar 31 2020 05:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46756 * 2 1 4 4 C 1.38118 * 120.03794 * 301.61107 * 3 2 1 5 5 C 1.38269 * 120.07720 * 180.02562 * 4 3 2 6 6 C 1.38314 * 120.15220 * 0.25458 * 5 4 3 7 7 C 1.38074 * 120.07571 * 359.48748 * 6 5 4 8 8 C 1.50698 * 120.04223 * 180.25276 * 7 6 5 9 9 C 1.38909 * 120.04053 * 121.63737 * 3 2 1 10 10 N 1.39716 * 120.07547 * 359.97438 * 9 3 2 11 11 C 1.39726 * 119.99772 * 271.92554 * 10 9 3 12 12 C 1.39348 * 119.95562 * 74.62943 * 11 10 9 13 13 C 1.38473 * 120.42126 * 179.72433 * 12 11 10 14 14 C 1.37698 * 120.32672 * 0.54514 * 13 12 11 15 15 C 1.40754 * 119.89028 * 359.73281 * 14 13 12 16 16 C 1.41414 * 120.19929 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00390 * 28.18341 * 16 15 14 18 18 C 1.39932 * 119.99818 * 208.18298 * 16 15 14 19 19 N 1.30832 * 120.00025 * 13.60291 * 18 16 15 20 20 Si 1.86800 * 119.99983 * 193.60617 * 18 16 15 21 21 H 1.48502 * 109.47221 * 90.00064 * 20 18 16 22 22 H 1.48500 * 109.46816 * 209.99622 * 20 18 16 23 23 H 1.48500 * 109.47078 * 329.99855 * 20 18 16 24 24 C 1.38298 * 119.95014 * 254.89932 * 11 10 9 25 25 H 1.09001 * 109.47112 * 56.83229 * 1 2 3 26 26 H 1.09000 * 109.46717 * 176.83377 * 1 2 3 27 27 H 1.08999 * 109.47223 * 296.82991 * 1 2 3 28 28 H 1.08994 * 109.47339 * 239.99796 * 2 1 3 29 29 H 1.08995 * 109.47273 * 119.99541 * 2 1 3 30 30 H 1.07999 * 119.96254 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.92532 * 179.97438 * 5 4 3 32 32 H 1.08000 * 119.96283 * 179.74933 * 6 5 4 33 33 H 1.09007 * 109.47275 * 274.92857 * 8 7 6 34 34 H 1.09006 * 109.47015 * 34.92849 * 8 7 6 35 35 H 1.09002 * 109.47433 * 154.92555 * 8 7 6 36 36 H 0.97000 * 120.00232 * 91.91612 * 10 9 3 37 37 H 1.08000 * 119.78574 * 359.97438 * 12 11 10 38 38 H 1.07995 * 119.83599 * 180.27669 * 13 12 11 39 39 H 1.07997 * 120.05207 * 179.74717 * 14 13 12 40 40 H 0.96999 * 120.00451 * 179.97438 * 19 18 16 41 41 H 1.08007 * 120.16144 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 1.6718 2.2816 -1.0183 5 6 2.1325 3.5853 -1.0194 6 6 2.9599 4.0306 -0.0043 7 6 3.3199 3.1770 1.0196 8 6 4.2167 3.6647 2.1281 9 6 2.8587 1.8663 1.0238 10 7 3.2254 0.9983 2.0554 11 6 2.4161 0.8783 3.1882 12 6 1.2175 0.1714 3.1152 13 6 0.4109 0.0416 4.2333 14 6 0.7795 0.6197 5.4274 15 6 1.9846 1.3417 5.5148 16 6 2.3698 1.9376 6.7380 17 1 2.0443 1.5082 7.6741 18 6 3.1727 3.0836 6.7357 19 7 3.3483 3.7571 5.6279 20 14 3.9939 3.6518 8.3144 21 1 5.3313 3.0173 8.4329 22 1 4.1473 5.1287 8.2886 23 1 3.1560 3.2613 9.4765 24 6 2.8033 1.4660 4.3787 25 1 -0.3633 0.5622 -0.8602 26 1 -0.3633 -1.0261 -0.0568 27 1 -0.3633 0.4638 0.9170 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.0299 1.9357 -1.8150 31 1 1.8495 4.2561 -1.8170 32 1 3.3213 5.0483 -0.0103 33 1 5.2584 3.5667 1.8225 34 1 3.9969 4.7112 2.3395 35 1 4.0434 3.0689 3.0244 36 1 4.0416 0.4790 1.9853 37 1 0.9177 -0.2815 2.1818 38 1 -0.5140 -0.5121 4.1672 39 1 0.1450 0.5191 6.2956 40 1 3.9046 4.5517 5.6263 41 1 3.7302 2.0175 4.4354 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210876188.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:04 Heat of formation + Delta-G solvation = 43.279041 kcal Electronic energy + Delta-G solvation = -21940.599244 eV Core-core repulsion = 18977.543585 eV Total energy + Delta-G solvation = -2963.055659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.58938 -37.46028 -34.64957 -34.20846 -33.27235 -30.91580 -29.61672 -29.09771 -27.19624 -25.88418 -25.12551 -23.51499 -21.46684 -20.91617 -19.85777 -19.74962 -17.37529 -16.63036 -15.90608 -15.25406 -14.89370 -14.85271 -14.64714 -13.85211 -13.41085 -13.23421 -13.04966 -12.90705 -12.66896 -12.38417 -12.16727 -11.80971 -11.60353 -11.45810 -11.20480 -11.14529 -11.02678 -10.81322 -10.65169 -10.47876 -10.28904 -10.27375 -9.67936 -9.63314 -9.17597 -8.14319 -8.03650 -7.77903 -7.30957 -7.02942 -6.67260 -4.33130 1.78735 1.81623 2.80888 3.01617 3.09915 3.12885 3.25101 3.97339 4.14082 4.49310 4.70254 5.14294 5.22293 5.38045 5.53428 5.64095 5.69722 5.74086 5.81724 5.93117 6.12473 6.14261 6.23808 6.24803 6.33498 6.37852 6.47370 6.49858 6.73615 6.80351 6.87964 6.92265 7.00040 7.12959 7.23558 7.25585 7.29380 7.43744 7.52427 7.91590 8.03737 8.10525 8.21226 8.48610 8.65868 8.86105 8.94554 9.06060 10.26758 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018643 B = 0.006017 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.569627 B = 4652.432949 C = 5810.524474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.086 4.086 4 C -0.128 4.128 5 C -0.128 4.128 6 C -0.128 4.128 7 C -0.079 4.079 8 C -0.122 4.122 9 C 0.184 3.816 10 N -0.745 5.745 11 C 0.169 3.831 12 C -0.253 4.253 13 C -0.095 4.095 14 C -0.225 4.225 15 C 0.114 3.886 16 C -0.467 4.467 17 H 0.075 0.925 18 C 0.076 3.924 19 N -0.797 5.797 20 Si 0.906 3.094 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.165 4.165 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.104 0.896 36 H 0.391 0.609 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.277 0.723 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.544 -1.427 -9.963 10.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.088 4.088 4 C -0.147 4.147 5 C -0.146 4.146 6 C -0.146 4.146 7 C -0.081 4.081 8 C -0.178 4.178 9 C 0.091 3.909 10 N -0.387 5.387 11 C 0.078 3.922 12 C -0.274 4.274 13 C -0.114 4.114 14 C -0.245 4.245 15 C 0.111 3.889 16 C -0.497 4.497 17 H 0.093 0.907 18 C -0.140 4.140 19 N -0.423 5.423 20 Si 0.731 3.269 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.188 1.188 24 C -0.186 4.186 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.228 0.772 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.506 -1.112 -10.015 10.089 hybrid contribution 0.522 0.415 0.606 0.901 sum 1.028 -0.697 -9.409 9.490 Atomic orbital electron populations 1.21822 0.95310 1.01093 1.02294 1.20629 0.95843 0.93275 1.02936 1.20319 0.97588 0.96252 0.94663 1.20752 1.01402 0.93764 0.98748 1.20961 0.98975 0.95833 0.98845 1.20885 0.99708 0.99239 0.94809 1.20512 0.98245 0.93490 0.95885 1.20919 0.96384 1.02013 0.98473 1.17204 0.95930 0.89201 0.88577 1.41063 1.28230 1.51038 1.18387 1.17312 0.91563 0.97487 0.85848 1.21096 0.98874 1.09119 0.98281 1.20435 0.97701 0.99598 0.93630 1.21054 0.98397 1.08413 0.96654 1.17499 0.89314 0.89181 0.92911 1.19518 1.27503 1.09090 0.93606 0.90687 1.25823 0.94771 0.95906 0.97535 1.69808 1.30524 1.14019 1.27901 0.86354 0.80168 0.77940 0.82446 1.19490 1.20458 1.18828 1.21640 1.01558 1.02658 0.92707 0.93167 0.92989 0.91726 0.92111 0.89004 0.86860 0.86883 0.86761 0.92845 0.92392 0.87712 0.77217 0.87687 0.89574 0.89214 0.91172 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.99 37.16 0.33 -1.71 16 2 C -0.09 -1.33 5.44 -27.88 -0.15 -1.48 16 3 C -0.09 -1.42 5.37 -104.42 -0.56 -1.98 16 4 C -0.13 -1.91 9.17 -39.61 -0.36 -2.27 16 5 C -0.13 -1.86 10.04 -39.54 -0.40 -2.26 16 6 C -0.13 -2.04 9.71 -39.61 -0.38 -2.42 16 7 C -0.08 -1.44 5.90 -104.42 -0.62 -2.06 16 8 C -0.12 -2.23 9.82 36.00 0.35 -1.87 16 9 C 0.18 3.39 5.84 -83.75 -0.49 2.90 16 10 N -0.75 -14.16 3.15 -8.45 -0.03 -14.18 16 11 C 0.17 3.77 5.85 -83.82 -0.49 3.28 16 12 C -0.25 -5.51 9.26 -39.08 -0.36 -5.87 16 13 C -0.09 -2.12 10.02 -39.69 -0.40 -2.52 16 14 C -0.23 -5.52 9.79 -38.83 -0.38 -5.90 16 15 C 0.11 2.98 5.54 -106.85 -0.59 2.39 16 16 C -0.47 -12.24 9.05 -37.74 -0.34 -12.58 16 17 H 0.07 1.91 7.88 -52.48 -0.41 1.50 16 18 C 0.08 1.89 5.20 -17.34 -0.09 1.80 16 19 N -0.80 -19.95 10.96 55.55 0.61 -19.34 16 20 Si 0.91 18.66 29.58 -169.99 -5.03 13.63 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 24 C -0.16 -4.10 7.76 -38.68 -0.30 -4.40 16 25 H 0.05 0.63 7.19 -51.93 -0.37 0.25 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.04 7.09 -51.93 -0.37 0.67 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.50 4.74 -51.93 -0.25 1.25 16 30 H 0.11 1.42 7.46 -52.49 -0.39 1.03 16 31 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.04 8.12 -51.93 -0.42 0.61 16 35 H 0.10 2.21 4.46 -51.93 -0.23 1.98 16 36 H 0.39 6.75 8.95 -40.82 -0.37 6.39 16 37 H 0.11 2.05 3.21 -52.49 -0.17 1.88 16 38 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 40 H 0.28 6.41 8.30 -40.82 -0.34 6.08 16 41 H 0.12 3.16 4.56 -52.48 -0.24 2.92 16 LS Contribution 326.38 15.07 4.92 4.92 Total: -1.00 -26.67 326.38 -10.07 -36.74 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -5.31 Total: 15.21 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: -5.23 Total: -36.96 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.58 Total: -33.53 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.67 -10.07 -36.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210876188.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.016 kcal (2) G-P(sol) polarization free energy of solvation -26.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds