Wall clock time and date at job start Tue Mar 31 2020 05:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30864 * 125.89446 * 2 1 4 4 C 1.33633 * 109.77267 * 180.02562 * 3 2 1 5 5 N 1.39885 * 125.60175 * 180.02562 * 4 3 2 6 6 C 1.34779 * 120.00148 * 179.97438 * 5 4 3 7 7 O 1.21584 * 119.99721 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00092 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99889 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47066 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.47393 * 300.00018 * 10 9 8 12 12 C 1.53006 * 109.47063 * 59.99917 * 10 9 8 13 13 C 1.50700 * 109.47233 * 179.97438 * 10 9 8 14 14 H 1.08000 * 119.99933 * 357.00930 * 13 10 9 15 15 C 1.37878 * 120.00130 * 177.00428 * 13 10 9 16 16 N 1.31519 * 119.99624 * 5.55086 * 15 13 10 17 17 Si 1.86791 * 120.00017 * 185.54243 * 15 13 10 18 18 H 1.48504 * 109.47269 * 85.00387 * 17 15 13 19 19 H 1.48508 * 109.47285 * 205.00304 * 17 15 13 20 20 H 1.48507 * 109.47339 * 325.00308 * 17 15 13 21 21 N 1.31167 * 108.79716 * 359.70980 * 4 3 2 22 22 N 1.34361 * 125.90190 * 179.97438 * 2 1 3 23 23 C 1.46501 * 126.76694 * 0.02562 * 22 2 1 24 24 H 1.09006 * 109.46979 * 270.00016 * 1 2 3 25 25 H 1.08993 * 109.47611 * 30.00270 * 1 2 3 26 26 H 1.09001 * 109.46887 * 150.00854 * 1 2 3 27 27 H 0.97001 * 119.99774 * 359.97438 * 5 4 3 28 28 H 0.97001 * 119.99830 * 359.97438 * 8 6 5 29 29 H 1.08998 * 109.46926 * 299.99472 * 9 8 6 30 30 H 1.08997 * 109.47503 * 59.99497 * 9 8 6 31 31 H 1.09002 * 109.46854 * 53.92939 * 11 10 9 32 32 H 1.08993 * 109.47139 * 173.93560 * 11 10 9 33 33 H 1.08999 * 109.46645 * 293.93495 * 11 10 9 34 34 H 1.09000 * 109.46829 * 59.99832 * 12 10 9 35 35 H 1.08995 * 109.47269 * 179.97438 * 12 10 9 36 36 H 1.09006 * 109.46769 * 299.99946 * 12 10 9 37 37 H 0.96997 * 119.99570 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.47361 * 89.99497 * 23 22 2 39 39 H 1.09001 * 109.47239 * 210.00277 * 23 22 2 40 40 H 1.09008 * 109.47128 * 329.99516 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0601 0.0000 4 6 3.5580 0.6891 -0.0006 5 7 4.6561 1.5556 -0.0002 6 6 5.9082 1.0568 -0.0003 7 8 6.0832 -0.1464 -0.0012 8 7 6.9663 1.8917 0.0005 9 6 8.3272 1.3494 -0.0002 10 6 9.3349 2.5007 0.0004 11 6 9.1278 3.3604 -1.2482 12 6 9.1283 3.3587 1.2503 13 6 10.7349 1.9430 0.0003 14 1 10.8908 0.8754 0.0487 15 6 11.8167 2.7955 -0.0617 16 7 11.6321 4.0967 -0.0105 17 14 13.5442 2.1026 -0.2180 18 1 13.8465 1.8446 -1.6489 19 1 14.5209 3.0803 0.3257 20 1 13.6389 0.8319 0.5448 21 7 3.6192 -0.6212 0.0054 22 7 2.2949 -1.0884 0.0005 23 6 1.8584 -2.4868 0.0006 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8901 -0.5137 27 1 4.5165 2.5155 0.0001 28 1 6.8266 2.8516 0.0008 29 1 8.4746 0.7367 0.8891 30 1 8.4745 0.7385 -0.8908 31 1 8.0858 3.6754 -1.3038 32 1 9.7707 4.2390 -1.1951 33 1 9.3794 2.7792 -2.1353 34 1 9.2759 2.7462 2.1398 35 1 9.8465 4.1786 1.2509 36 1 8.1157 3.7621 1.2507 37 1 12.3931 4.6965 -0.0545 38 1 1.7505 -2.8339 -1.0270 39 1 2.5996 -3.0987 0.5148 40 1 0.9004 -2.5685 0.5142 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218784383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:53 Heat of formation + Delta-G solvation = 69.615223 kcal Electronic energy + Delta-G solvation = -21884.657017 eV Core-core repulsion = 18544.186868 eV Total energy + Delta-G solvation = -3340.470148 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.16266 -39.66222 -36.59642 -35.07918 -33.45816 -33.11953 -32.28843 -30.70943 -28.66089 -26.72499 -25.70802 -25.55794 -24.85317 -22.31852 -21.00943 -20.04208 -18.79192 -18.18139 -17.38782 -16.41588 -15.95463 -15.76299 -15.08861 -14.73398 -14.41025 -14.21078 -13.73389 -13.61524 -13.51915 -13.35361 -12.86447 -12.78653 -12.72644 -12.16787 -11.63108 -11.44399 -11.18282 -10.89160 -10.70356 -10.66966 -10.34653 -10.21315 -10.06746 -9.76900 -9.72693 -9.60577 -9.32312 -8.78454 -8.68843 -8.38866 -8.21240 -6.01143 -4.09782 1.59018 2.06940 2.71713 2.76919 3.30770 3.37077 3.40996 3.73448 4.03216 4.24840 4.40673 4.57923 4.78206 4.90253 5.06744 5.16850 5.26191 5.30146 5.38990 5.57882 6.17330 6.28487 6.36156 6.50855 6.61614 6.77261 6.83180 6.84454 6.88843 7.03812 7.04466 7.09359 7.38271 7.57853 7.72014 8.01212 8.01838 8.14607 8.38448 8.44619 8.87448 8.92962 9.55539 11.01030 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.044991 B = 0.003099 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.196870 B = 9033.816839 C = 9452.357286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.285 3.715 3 N -0.560 5.560 4 C 0.462 3.538 5 N -0.641 5.641 6 C 0.696 3.304 7 O -0.552 6.552 8 N -0.723 5.723 9 C 0.150 3.850 10 C 0.057 3.943 11 C -0.129 4.129 12 C -0.131 4.131 13 C -0.507 4.507 14 H 0.058 0.942 15 C 0.067 3.933 16 N -0.885 5.885 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.275 1.275 21 N -0.288 5.288 22 N -0.386 5.386 23 C 0.100 3.900 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.417 0.583 28 H 0.396 0.604 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.007 0.993 32 H 0.081 0.919 33 H 0.030 0.970 34 H 0.027 0.973 35 H 0.086 0.914 36 H 0.006 0.994 37 H 0.260 0.740 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.070 -5.718 0.021 22.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.009 3.991 3 N -0.294 5.294 4 C 0.092 3.908 5 N -0.298 5.298 6 C 0.395 3.605 7 O -0.425 6.425 8 N -0.379 5.379 9 C 0.028 3.972 10 C 0.056 3.944 11 C -0.187 4.187 12 C -0.188 4.188 13 C -0.546 4.546 14 H 0.076 0.924 15 C -0.134 4.134 16 N -0.524 5.524 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.200 1.200 21 N -0.123 5.123 22 N -0.179 5.179 23 C -0.042 4.042 24 H 0.109 0.891 25 H 0.115 0.885 26 H 0.101 0.899 27 H 0.254 0.746 28 H 0.231 0.769 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.026 0.974 32 H 0.100 0.900 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.104 0.896 36 H 0.025 0.975 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.112 0.888 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.104 -6.809 0.027 22.175 hybrid contribution 0.671 0.522 -0.110 0.857 sum -20.433 -6.287 -0.083 21.378 Atomic orbital electron populations 1.20363 0.83749 1.04848 1.04371 1.24104 0.96356 0.82182 0.96501 1.70088 0.99844 1.29724 1.29705 1.19963 0.85987 0.87135 0.97739 1.41751 1.01636 1.08719 1.77651 1.15954 0.79569 0.86113 0.78894 1.91005 1.83599 1.12600 1.55272 1.45471 1.05664 1.09041 1.77685 1.21676 0.77007 0.97835 1.00685 1.18373 0.92586 0.90583 0.92882 1.21810 0.96943 1.02155 0.97791 1.21855 0.97749 1.01622 0.97614 1.20963 0.89552 0.93170 1.50903 0.92352 1.24872 0.98958 0.94828 0.94764 1.69829 1.30527 1.01806 1.50207 0.86589 0.84095 0.78828 0.78364 1.20627 1.21351 1.19953 1.78980 0.93789 1.09051 1.30469 1.50266 1.04077 1.07619 1.55956 1.21879 1.01164 0.77513 1.03683 0.89107 0.88465 0.89909 0.74561 0.76857 0.92631 0.92605 0.97431 0.89989 0.95125 0.95393 0.89564 0.97543 0.93009 0.90360 0.88805 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.00 36.00 0.36 -0.03 16 2 C 0.29 3.26 7.97 -155.73 -1.24 2.02 16 3 N -0.56 -8.25 11.21 -11.07 -0.12 -8.37 16 4 C 0.46 7.98 8.83 -320.83 -2.83 5.15 16 5 N -0.64 -10.46 5.44 -17.22 -0.09 -10.55 16 6 C 0.70 13.54 8.53 -86.91 -0.74 12.79 16 7 O -0.55 -12.90 15.03 5.29 0.08 -12.82 16 8 N -0.72 -13.43 4.91 -65.23 -0.32 -13.75 16 9 C 0.15 3.28 4.50 -4.04 -0.02 3.26 16 10 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 11 C -0.13 -2.93 8.03 37.16 0.30 -2.63 16 12 C -0.13 -2.96 8.11 37.16 0.30 -2.66 16 13 C -0.51 -13.40 8.01 -34.44 -0.28 -13.67 16 14 H 0.06 1.56 7.75 -52.49 -0.41 1.15 16 15 C 0.07 1.78 5.13 -17.82 -0.09 1.69 16 16 N -0.89 -23.72 9.45 55.43 0.52 -23.19 16 17 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 N -0.29 -5.21 10.88 30.04 0.33 -4.88 16 22 N -0.39 -4.89 4.03 -65.10 -0.26 -5.15 16 23 C 0.10 0.71 11.15 59.85 0.67 1.37 16 24 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.23 7.75 -51.93 -0.40 -0.17 16 27 H 0.42 5.37 8.84 -40.82 -0.36 5.01 16 28 H 0.40 6.48 6.17 -40.82 -0.25 6.22 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.01 0.13 6.71 -51.93 -0.35 -0.21 16 32 H 0.08 2.03 6.25 -51.93 -0.32 1.70 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 2.16 6.10 -51.93 -0.32 1.84 16 36 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 37 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.09 0.29 7.70 -51.92 -0.40 -0.10 16 LS Contribution 330.15 15.07 4.98 4.98 Total: -1.00 -34.51 330.15 -9.25 -43.76 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.68 Total: 5.57 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -3.65 Total: 8.53 kcal Atomic # 7 Polarization: -65.94 SS G_CDS: 0.05 Total: -65.89 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.51 -9.25 -43.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218784383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.377 kcal (2) G-P(sol) polarization free energy of solvation -34.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds