Wall clock time and date at job start Tue Mar 31 2020 05:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47757 * 2 1 4 4 C 1.50707 * 109.47033 * 239.99477 * 2 1 3 5 5 H 1.07995 * 119.99988 * 240.00226 * 4 2 1 6 6 C 1.37874 * 119.99600 * 60.00269 * 4 2 1 7 7 N 1.31516 * 119.99899 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99938 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46961 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46757 * 120.00257 * 8 6 4 11 11 H 1.48503 * 109.47098 * 239.99879 * 8 6 4 12 12 C 1.53004 * 109.47141 * 120.00012 * 2 1 3 13 13 N 1.46496 * 109.47116 * 299.99719 * 12 2 1 14 14 C 1.34780 * 120.00090 * 180.02562 * 13 12 2 15 15 O 1.21587 * 120.00083 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99679 * 180.02562 * 14 13 12 17 17 C 1.46506 * 119.99507 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.46951 * 179.97438 * 17 16 14 19 19 N 1.46500 * 109.47084 * 179.97438 * 18 17 16 20 20 C 1.34429 * 126.81895 * 124.99739 * 19 18 17 21 21 N 1.30837 * 108.07952 * 180.02562 * 20 19 18 22 22 C 1.33246 * 109.82318 * 359.97438 * 21 20 19 23 23 N 1.30712 * 108.94935 * 0.27015 * 22 21 20 24 24 H 1.09004 * 109.47021 * 300.00309 * 1 2 3 25 25 H 1.08996 * 109.47395 * 59.99901 * 1 2 3 26 26 H 1.09001 * 109.47294 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47574 * 180.02562 * 3 2 1 28 28 H 1.09010 * 109.46557 * 300.00352 * 3 2 1 29 29 H 1.08997 * 109.46874 * 59.99433 * 3 2 1 30 30 H 0.97001 * 119.99675 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47109 * 180.02562 * 12 2 1 32 32 H 1.09001 * 109.47222 * 59.99717 * 12 2 1 33 33 H 0.96999 * 119.99808 * 359.97438 * 13 12 2 34 34 H 0.96992 * 120.00540 * 359.97438 * 16 14 13 35 35 H 1.09002 * 109.47315 * 59.99396 * 17 16 14 36 36 H 1.08996 * 109.46995 * 299.99247 * 17 16 14 37 37 H 1.09002 * 109.47279 * 59.99772 * 18 17 16 38 38 H 1.08995 * 109.47424 * 299.99951 * 18 17 16 39 39 H 1.08000 * 125.96340 * 359.97438 * 20 19 18 40 40 H 1.08002 * 125.52127 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7106 -1.2305 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6033 8 14 2.3224 -1.1198 -4.0079 9 1 3.1472 -2.2865 -3.6037 10 1 1.1676 -1.5867 -4.8164 11 1 3.1471 -0.1860 -4.8161 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5767 -1.4794 3.7811 16 7 1.4281 0.1443 4.7699 17 6 1.7820 -0.3562 6.1006 18 6 1.1489 0.5393 7.1673 19 7 1.5023 0.0385 8.4979 20 6 2.0931 0.7296 9.4881 21 7 2.2376 -0.0717 10.5123 22 6 1.7528 -1.2767 10.2152 23 7 1.2962 -1.2605 8.9906 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 0.7095 1.1617 -3.4844 31 1 3.1300 -0.7209 1.2495 32 1 1.6766 -1.7489 1.2493 33 1 0.9944 0.7582 2.3564 34 1 0.8702 0.9327 4.6810 35 1 2.8659 -0.3473 6.2157 36 1 1.4128 -1.3753 6.2154 37 1 0.0650 0.5308 7.0524 38 1 1.5183 1.5583 7.0524 39 1 2.3963 1.7652 9.4455 40 1 1.7434 -2.1300 10.8773 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221826360.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:22 Heat of formation + Delta-G solvation = 58.765344 kcal Electronic energy + Delta-G solvation = -21404.298128 eV Core-core repulsion = 18063.357494 eV Total energy + Delta-G solvation = -3340.940634 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.36731 -39.70981 -36.78377 -35.78878 -33.63606 -33.20016 -31.52749 -30.90456 -29.00694 -25.75409 -25.65816 -25.02923 -23.75409 -22.34411 -21.70905 -20.77012 -18.83617 -18.40125 -17.45056 -16.52509 -15.85814 -15.76587 -15.42836 -15.18281 -14.72143 -14.57647 -14.21366 -14.11532 -13.61206 -13.02878 -12.91309 -12.75723 -12.40303 -12.20924 -11.79724 -11.40000 -11.22944 -10.89729 -10.67496 -10.41551 -10.37135 -10.23447 -10.14537 -10.06619 -9.88858 -9.66186 -9.34395 -9.16028 -8.80770 -8.44801 -8.26631 -6.04425 -4.14164 1.28876 1.82541 2.65843 3.01531 3.26004 3.34773 3.40002 3.54090 3.97502 4.01321 4.32476 4.36891 4.53655 4.66934 4.71303 4.87879 5.22693 5.44566 5.63340 5.87475 6.09014 6.16344 6.33310 6.36087 6.45159 6.48245 6.75744 6.79127 6.85566 7.00174 7.03496 7.19542 7.35807 7.53133 7.68018 7.74218 7.98647 8.09808 8.33947 8.39868 8.85605 8.94609 9.51838 10.97098 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.054434 B = 0.002584 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.262913 B =10834.181083 C =11049.992248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.150 3.850 13 N -0.731 5.731 14 C 0.700 3.300 15 O -0.595 6.595 16 N -0.754 5.754 17 C 0.133 3.867 18 C 0.120 3.880 19 N -0.377 5.377 20 C 0.257 3.743 21 N -0.548 5.548 22 C 0.198 3.802 23 N -0.312 5.312 24 H 0.005 0.995 25 H 0.085 0.915 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.085 0.915 29 H 0.005 0.995 30 H 0.259 0.741 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.394 0.606 34 H 0.395 0.605 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.220 0.780 40 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 4.767 19.433 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.543 4.543 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.027 3.973 13 N -0.385 5.385 14 C 0.399 3.601 15 O -0.473 6.473 16 N -0.413 5.413 17 C 0.007 3.993 18 C -0.003 4.003 19 N -0.168 5.168 20 C -0.040 4.040 21 N -0.275 5.275 22 C -0.105 4.105 23 N -0.140 5.140 24 H 0.024 0.976 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.229 0.771 34 H 0.228 0.772 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.127 0.873 39 H 0.236 0.764 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -1.464 3.429 19.225 19.583 hybrid contribution -0.193 0.561 -1.032 1.190 sum -1.657 3.990 18.193 18.699 Atomic orbital electron populations 1.21825 0.97766 0.99205 0.99997 1.18372 0.92805 0.92778 0.90546 1.21824 0.98604 0.98355 0.99999 1.21026 1.31357 1.12081 0.89832 0.92333 1.24882 0.94867 0.94939 0.98880 1.69813 1.36808 1.22787 1.23119 0.86511 0.78648 0.79765 0.82945 1.19734 1.21067 1.21064 1.21617 0.97930 0.95478 0.82289 1.45501 1.55505 1.33012 1.04480 1.15988 0.80565 0.82945 0.80577 1.90912 1.42908 1.27549 1.85961 1.44881 1.58130 1.33737 1.04520 1.21184 1.00212 0.98128 0.79806 1.21935 1.02275 0.98271 0.77825 1.50377 1.45172 1.08336 1.12948 1.26137 0.93933 1.00043 0.83894 1.70567 1.25801 1.02621 1.28530 1.26068 0.95709 0.96410 0.92320 1.78138 1.25365 0.97444 1.13031 0.97571 0.89621 0.95415 0.95427 0.89618 0.97572 0.93073 0.92889 0.92867 0.77137 0.77193 0.91233 0.90202 0.88447 0.87272 0.76369 0.76592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 4 C -0.50 -13.08 8.01 -34.44 -0.28 -13.35 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -23.31 9.35 55.43 0.52 -22.80 16 8 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.15 3.15 4.50 -4.04 -0.02 3.14 16 13 N -0.73 -12.55 4.96 -65.22 -0.32 -12.87 16 14 C 0.70 11.92 8.57 -86.91 -0.74 11.18 16 15 O -0.60 -12.87 16.34 5.29 0.09 -12.78 16 16 N -0.75 -8.59 5.56 -65.22 -0.36 -8.95 16 17 C 0.13 1.39 5.88 -4.04 -0.02 1.36 16 18 C 0.12 0.75 6.66 -4.04 -0.03 0.72 16 19 N -0.38 -3.24 3.69 -62.63 -0.23 -3.47 16 20 C 0.26 1.91 12.63 -90.65 -1.14 0.76 16 21 N -0.55 -5.44 11.19 -15.83 -0.18 -5.62 16 22 C 0.20 1.91 13.03 -91.81 -1.20 0.71 16 23 N -0.31 -3.47 12.56 29.29 0.37 -3.11 16 24 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 25 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 2.09 6.07 -51.92 -0.32 1.77 16 29 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 30 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 31 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.39 5.90 6.18 -40.82 -0.25 5.65 16 34 H 0.39 3.08 8.49 -40.82 -0.35 2.73 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.11 0.32 8.09 -51.93 -0.42 -0.10 16 39 H 0.22 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.22 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -33.40 333.39 -8.83 -42.23 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.71 Total: 4.59 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -3.00 Total: 2.20 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.21 Total: -56.82 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.78 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.40 -8.83 -42.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221826360.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.993 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds