Wall clock time and date at job start Tue Mar 31 2020 05:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 O 1.42898 * 109.47319 * 120.00307 * 2 1 3 5 5 C 1.42902 * 113.99874 * 270.00076 * 4 2 1 6 6 C 1.53001 * 109.47312 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47433 * 180.02562 * 6 5 4 8 8 C 1.52989 * 109.47184 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.46945 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46823 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00544 * 0.02562 * 10 9 8 12 12 C 1.37887 * 119.99954 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99710 * 0.02562 * 12 10 9 14 14 Si 1.86790 * 120.00220 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47214 * 59.99706 * 14 12 10 16 16 H 1.48495 * 109.47186 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47469 * 300.00053 * 14 12 10 18 18 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 19 19 C 1.38634 * 120.80065 * 264.99754 * 18 2 1 20 20 C 1.38187 * 119.19389 * 179.97438 * 19 18 2 21 21 N 1.31883 * 120.82239 * 0.02562 * 20 19 18 22 22 C 1.31838 * 121.74536 * 359.97438 * 21 20 19 23 23 C 1.38468 * 120.72902 * 359.73422 * 22 21 20 24 24 F 1.35102 * 120.44555 * 180.26574 * 23 22 21 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 28 28 H 1.09002 * 109.47082 * 300.00110 * 5 4 2 29 29 H 1.08997 * 109.47374 * 59.99540 * 5 4 2 30 30 H 1.09004 * 109.46662 * 299.99956 * 6 5 4 31 31 H 1.08997 * 109.47257 * 59.99492 * 6 5 4 32 32 H 1.09006 * 109.46528 * 300.00075 * 7 6 5 33 33 H 1.09004 * 109.47017 * 59.99321 * 7 6 5 34 34 H 1.09006 * 109.47423 * 299.99495 * 8 7 6 35 35 H 1.09003 * 109.47529 * 60.00234 * 8 7 6 36 36 H 1.08995 * 109.47228 * 299.99444 * 9 8 7 37 37 H 1.08996 * 109.46984 * 60.00083 * 9 8 7 38 38 H 0.96993 * 120.00302 * 180.02562 * 13 12 10 39 39 H 1.08001 * 120.39997 * 0.02562 * 19 18 2 40 40 H 1.07997 * 119.59134 * 180.02562 * 20 19 18 41 41 H 1.08007 * 119.63488 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 0.1829 2.2941 6 6 2.7079 -0.6409 3.4792 7 6 2.9148 0.2761 4.6864 8 6 3.4232 -0.5475 5.8712 9 6 3.6306 0.3696 7.0782 10 6 4.1308 -0.4418 8.2455 11 1 4.2858 -1.5051 8.1372 12 6 4.3908 0.1733 9.4518 13 7 4.2016 1.4681 9.5838 14 14 5.0115 -0.8322 10.8984 15 1 6.3010 -1.4743 10.5380 16 1 5.2127 0.0579 12.0699 17 1 4.0147 -1.8796 11.2373 18 6 2.0323 -0.7104 -1.2305 19 6 2.3668 -2.0550 -1.1870 20 6 2.8236 -2.6734 -2.3353 21 7 2.9435 -2.0005 -3.4632 22 6 2.6354 -0.7212 -3.5438 23 6 2.1655 -0.0354 -2.4364 24 9 1.8465 1.2743 -2.5267 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 2.9319 0.9513 2.0450 29 1 1.2539 0.6546 2.5588 30 1 1.9757 -1.4090 3.7280 31 1 3.6541 -1.1130 3.2147 32 1 3.6468 1.0445 4.4377 33 1 1.9683 0.7478 4.9507 34 1 2.6915 -1.3163 6.1200 35 1 4.3698 -1.0189 5.6066 36 1 4.3625 1.1379 6.8292 37 1 2.6843 0.8412 7.3430 38 1 4.3848 1.9010 10.4323 39 1 2.2708 -2.6127 -0.2671 40 1 3.0856 -3.7208 -2.3088 41 1 2.7471 -0.2032 -4.4849 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224374953.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:09 Heat of formation + Delta-G solvation = -88.988740 kcal Electronic energy + Delta-G solvation = -20759.508410 eV Core-core repulsion = 17359.947965 eV Total energy + Delta-G solvation = -3399.560445 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.39597 -40.55748 -38.57933 -35.56104 -33.94106 -32.71091 -31.33608 -30.61777 -29.90150 -26.54169 -25.02384 -23.97427 -23.28897 -21.82008 -21.05571 -20.05074 -18.01519 -17.84976 -17.16378 -16.35806 -16.26957 -16.10695 -15.86979 -14.97370 -14.62521 -14.49042 -14.45077 -14.07605 -13.83552 -13.45454 -13.13632 -12.79409 -12.54506 -12.46813 -12.21047 -11.89816 -11.61640 -11.41884 -11.05129 -10.95025 -10.53140 -10.50016 -10.41071 -10.13332 -10.04637 -9.72608 -9.64441 -9.37222 -9.26316 -9.02347 -8.33106 -5.98420 -4.00645 0.50117 0.64001 3.14586 3.23894 3.33988 3.38170 3.40860 3.64547 4.04066 4.08432 4.39126 4.43248 4.47317 4.71076 4.76002 5.05301 5.08329 5.14795 5.18028 5.29677 5.37068 5.37824 5.42607 5.52717 5.59753 5.66950 5.75701 5.78927 6.03212 6.19536 6.24155 6.37378 6.47695 6.79668 6.93270 6.98659 7.17035 7.39472 7.69675 7.85222 8.02280 8.45357 9.06633 9.63180 11.12956 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.036030 B = 0.002251 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.950577 B =12438.003306 C =12817.416866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.126 3.874 3 H 0.078 0.922 4 O -0.377 6.377 5 C 0.062 3.938 6 C -0.116 4.116 7 C -0.116 4.116 8 C -0.109 4.109 9 C 0.020 3.980 10 C -0.521 4.521 11 H 0.054 0.946 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.074 4.074 19 C -0.116 4.116 20 C 0.087 3.913 21 N -0.460 5.460 22 C 0.073 3.927 23 C 0.051 3.949 24 F -0.128 7.128 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.261 0.739 39 H 0.154 0.846 40 H 0.166 0.834 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.722 -3.752 -26.094 27.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.095 0.905 4 O -0.297 6.297 5 C -0.014 4.014 6 C -0.153 4.153 7 C -0.154 4.154 8 C -0.147 4.147 9 C -0.017 4.017 10 C -0.559 4.559 11 H 0.072 0.928 12 C -0.146 4.146 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.083 4.083 19 C -0.136 4.136 20 C -0.070 4.070 21 N -0.168 5.168 22 C -0.086 4.086 23 C 0.029 3.971 24 F -0.107 7.107 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.172 0.828 40 H 0.183 0.817 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.379 -4.188 -26.696 27.765 hybrid contribution -0.056 0.548 1.622 1.713 sum -6.434 -3.639 -25.074 26.141 Atomic orbital electron populations 1.22240 0.93978 1.03435 1.02930 1.20672 0.94182 0.95136 0.83227 0.90454 1.87884 1.86459 1.35658 1.19681 1.22757 0.99644 0.93219 0.85809 1.21599 1.01745 0.98956 0.93009 1.21593 1.01212 0.98203 0.94369 1.21610 0.99351 0.98669 0.95048 1.19106 0.96867 0.94552 0.91193 1.21255 1.43955 0.94644 0.96052 0.92779 1.25040 0.95766 0.94921 0.98839 1.69953 1.49220 1.09061 1.25399 0.86657 0.79402 0.79993 0.81942 1.20254 1.21310 1.20247 1.20389 0.98775 0.95285 0.93808 1.22056 0.97166 0.93599 1.00773 1.22931 0.95700 1.00721 0.87621 1.67727 1.13954 1.07196 1.27958 1.22875 0.97045 0.90935 0.97712 1.18621 1.03304 0.79533 0.95594 1.91522 1.90400 1.32065 1.96714 0.91297 0.91119 0.91477 0.93194 0.93061 0.91337 0.91400 0.92407 0.92372 0.93392 0.93408 0.96712 0.96707 0.92986 0.82823 0.81684 0.81507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 9.51 37.16 0.35 -1.05 16 2 C 0.13 1.22 2.76 -27.88 -0.08 1.14 16 3 H 0.08 0.74 7.53 -51.93 -0.39 0.35 16 4 O -0.38 -4.31 8.92 -35.23 -0.31 -4.62 16 5 C 0.06 0.72 5.75 37.16 0.21 0.93 16 6 C -0.12 -1.56 5.58 -26.73 -0.15 -1.71 16 7 C -0.12 -1.90 5.21 -26.74 -0.14 -2.04 16 8 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 11 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 14 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C -0.07 -0.70 5.10 -104.26 -0.53 -1.24 16 19 C -0.12 -1.01 9.43 -39.45 -0.37 -1.38 16 20 C 0.09 0.70 11.18 -17.55 -0.20 0.51 16 21 N -0.46 -4.35 10.36 -13.19 -0.14 -4.49 16 22 C 0.07 0.62 11.17 -17.46 -0.20 0.43 16 23 C 0.05 0.47 7.29 -39.28 -0.29 0.18 16 24 F -0.13 -1.21 16.71 2.25 0.04 -1.17 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.57 7.87 -51.93 -0.41 0.16 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.56 8.09 -51.93 -0.42 0.14 16 29 H 0.05 0.56 7.87 -51.93 -0.41 0.15 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.15 1.24 7.45 -52.49 -0.39 0.85 16 40 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -31.35 350.22 -8.12 -39.47 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -6.63 Total: -4.81 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -2.07 Total: -19.97 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 0.60 Total: -30.98 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.31 Total: -4.62 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.35 -8.12 -39.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224374953.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.518 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds