Wall clock time and date at job start Tue Mar 31 2020 05:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 O 1.42898 * 109.47319 * 120.00307 * 2 1 3 5 5 C 1.42902 * 113.99874 * 270.00076 * 4 2 1 6 6 C 1.53001 * 109.47312 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47433 * 180.02562 * 6 5 4 8 8 C 1.52989 * 109.47184 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.46945 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46823 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00544 * 0.02562 * 10 9 8 12 12 C 1.37887 * 119.99954 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99710 * 0.02562 * 12 10 9 14 14 Si 1.86790 * 120.00220 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47214 * 59.99706 * 14 12 10 16 16 H 1.48495 * 109.47186 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47469 * 300.00053 * 14 12 10 18 18 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 19 19 C 1.38634 * 120.80065 * 264.99754 * 18 2 1 20 20 C 1.38187 * 119.19389 * 179.97438 * 19 18 2 21 21 N 1.31883 * 120.82239 * 0.02562 * 20 19 18 22 22 C 1.31838 * 121.74536 * 359.97438 * 21 20 19 23 23 C 1.38468 * 120.72902 * 359.73422 * 22 21 20 24 24 F 1.35102 * 120.44555 * 180.26574 * 23 22 21 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 28 28 H 1.09002 * 109.47082 * 300.00110 * 5 4 2 29 29 H 1.08997 * 109.47374 * 59.99540 * 5 4 2 30 30 H 1.09004 * 109.46662 * 299.99956 * 6 5 4 31 31 H 1.08997 * 109.47257 * 59.99492 * 6 5 4 32 32 H 1.09006 * 109.46528 * 300.00075 * 7 6 5 33 33 H 1.09004 * 109.47017 * 59.99321 * 7 6 5 34 34 H 1.09006 * 109.47423 * 299.99495 * 8 7 6 35 35 H 1.09003 * 109.47529 * 60.00234 * 8 7 6 36 36 H 1.08995 * 109.47228 * 299.99444 * 9 8 7 37 37 H 1.08996 * 109.46984 * 60.00083 * 9 8 7 38 38 H 0.96993 * 120.00302 * 180.02562 * 13 12 10 39 39 H 1.08001 * 120.39997 * 0.02562 * 19 18 2 40 40 H 1.07997 * 119.59134 * 180.02562 * 20 19 18 41 41 H 1.08007 * 119.63488 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 0.1829 2.2941 6 6 2.7079 -0.6409 3.4792 7 6 2.9148 0.2761 4.6864 8 6 3.4232 -0.5475 5.8712 9 6 3.6306 0.3696 7.0782 10 6 4.1308 -0.4418 8.2455 11 1 4.2858 -1.5051 8.1372 12 6 4.3908 0.1733 9.4518 13 7 4.2016 1.4681 9.5838 14 14 5.0115 -0.8322 10.8984 15 1 6.3010 -1.4743 10.5380 16 1 5.2127 0.0579 12.0699 17 1 4.0147 -1.8796 11.2373 18 6 2.0323 -0.7104 -1.2305 19 6 2.3668 -2.0550 -1.1870 20 6 2.8236 -2.6734 -2.3353 21 7 2.9435 -2.0005 -3.4632 22 6 2.6354 -0.7212 -3.5438 23 6 2.1655 -0.0354 -2.4364 24 9 1.8465 1.2743 -2.5267 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 2.9319 0.9513 2.0450 29 1 1.2539 0.6546 2.5588 30 1 1.9757 -1.4090 3.7280 31 1 3.6541 -1.1130 3.2147 32 1 3.6468 1.0445 4.4377 33 1 1.9683 0.7478 4.9507 34 1 2.6915 -1.3163 6.1200 35 1 4.3698 -1.0189 5.6066 36 1 4.3625 1.1379 6.8292 37 1 2.6843 0.8412 7.3430 38 1 4.3848 1.9010 10.4323 39 1 2.2708 -2.6127 -0.2671 40 1 3.0856 -3.7208 -2.3088 41 1 2.7471 -0.2032 -4.4849 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224374953.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:09 Heat of formation + Delta-G solvation = -105.710621 kcal Electronic energy + Delta-G solvation = -20760.233525 eV Core-core repulsion = 17359.947965 eV Total energy + Delta-G solvation = -3400.285560 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.08985 -41.22110 -39.41303 -37.00666 -35.18697 -34.31185 -32.04884 -31.92811 -30.85162 -28.17823 -25.83689 -25.14240 -24.37736 -22.56993 -22.39364 -21.68286 -18.71803 -18.57450 -18.40936 -17.83183 -17.16578 -16.91497 -16.82908 -16.52911 -15.85146 -15.68784 -15.12038 -14.78872 -14.67444 -14.53702 -14.29808 -14.21549 -13.81571 -13.36832 -13.27351 -13.15889 -13.02257 -12.77747 -12.67679 -12.32837 -12.14736 -11.96007 -11.78777 -11.34622 -11.31049 -11.00878 -10.91795 -10.70410 -10.54750 -10.48465 -10.02191 -8.19961 -6.31220 -0.15085 -0.02439 1.39689 1.42919 1.50893 2.34222 2.41740 2.57759 2.97873 3.12729 3.35217 3.48675 3.74506 3.76504 3.98456 4.01824 4.08231 4.16292 4.29970 4.41416 4.43302 4.49562 4.54814 4.70184 4.72840 4.79078 4.86676 4.89044 4.95634 5.02257 5.10685 5.13507 5.31153 5.31523 5.40058 5.55971 5.57038 5.78987 5.87516 6.12966 6.26530 6.75862 6.86284 7.37972 8.91651 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.036030 B = 0.002251 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.950577 B =12438.003306 C =12817.416866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.124 3.876 3 H 0.077 0.923 4 O -0.385 6.385 5 C 0.065 3.935 6 C -0.106 4.106 7 C -0.108 4.108 8 C -0.099 4.099 9 C 0.021 3.979 10 C -0.546 4.546 11 H 0.059 0.941 12 C -0.003 4.003 13 N -0.934 5.934 14 Si 0.966 3.034 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.266 1.266 18 C -0.084 4.084 19 C -0.122 4.122 20 C 0.089 3.911 21 N -0.479 5.479 22 C 0.073 3.927 23 C 0.041 3.959 24 F -0.132 7.132 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.049 0.951 36 H -0.010 1.010 37 H -0.009 1.009 38 H 0.264 0.736 39 H 0.159 0.841 40 H 0.191 0.809 41 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.726 -5.019 -26.702 27.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.066 3.934 3 H 0.095 0.905 4 O -0.305 6.305 5 C -0.011 4.011 6 C -0.143 4.143 7 C -0.146 4.146 8 C -0.137 4.137 9 C -0.016 4.016 10 C -0.584 4.584 11 H 0.078 0.922 12 C -0.201 4.201 13 N -0.575 5.575 14 Si 0.790 3.210 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.191 1.191 18 C -0.093 4.093 19 C -0.141 4.141 20 C -0.067 4.067 21 N -0.187 5.187 22 C -0.086 4.086 23 C 0.020 3.980 24 F -0.111 7.111 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.008 0.992 37 H 0.009 0.991 38 H 0.072 0.928 39 H 0.176 0.824 40 H 0.208 0.792 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -6.388 -5.462 -27.324 28.587 hybrid contribution -0.057 0.958 1.779 2.021 sum -6.445 -4.505 -25.545 26.727 Atomic orbital electron populations 1.22211 0.92996 1.03572 1.03417 1.20770 0.94952 0.95023 0.82674 0.90469 1.87847 1.86738 1.35918 1.20006 1.22625 1.00197 0.92836 0.85418 1.21411 1.01992 0.98452 0.92479 1.21441 1.01001 0.98097 0.94028 1.21439 0.99824 0.98035 0.94359 1.19048 0.94682 0.94700 0.93193 1.21732 1.44166 0.95238 0.97251 0.92238 1.26021 0.95823 0.96113 1.02117 1.70088 1.50136 1.10896 1.26344 0.85494 0.79196 0.78431 0.77904 1.19163 1.20810 1.19092 1.20500 0.99164 0.95805 0.93847 1.22160 0.97349 0.93371 1.01247 1.23354 0.94583 1.01787 0.87007 1.67797 1.14690 1.07645 1.28594 1.23223 0.96147 0.90831 0.98350 1.18697 1.04008 0.79487 0.95853 1.91509 1.90531 1.32300 1.96746 0.91319 0.90837 0.90775 0.92831 0.92109 0.91043 0.91419 0.92501 0.92216 0.93035 0.93202 0.99183 0.99078 0.92774 0.82368 0.79180 0.79448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.51 71.98 0.68 -1.84 16 2 C 0.12 2.25 2.76 29.85 0.08 2.33 16 3 H 0.08 1.39 7.53 -2.39 -0.02 1.38 16 4 O -0.39 -8.23 8.92 -148.98 -1.33 -9.56 16 5 C 0.07 1.42 5.75 71.98 0.41 1.83 16 6 C -0.11 -2.70 5.58 30.59 0.17 -2.53 16 7 C -0.11 -3.46 5.21 30.59 0.16 -3.30 16 8 C -0.10 -4.03 5.15 30.59 0.16 -3.87 16 9 C 0.02 1.11 4.97 29.85 0.15 1.26 16 10 C -0.55 -31.58 9.11 25.60 0.23 -31.34 16 11 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 12 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 13 N -0.93 -57.55 13.29 21.45 0.28 -57.26 16 14 Si 0.97 44.58 29.54 68.60 2.03 46.61 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 18 C -0.08 -1.52 5.10 -19.63 -0.10 -1.62 16 19 C -0.12 -1.95 9.43 22.35 0.21 -1.74 16 20 C 0.09 1.30 11.18 84.67 0.95 2.24 16 21 N -0.48 -8.36 10.36 -195.66 -2.03 -10.38 16 22 C 0.07 1.15 11.17 84.75 0.95 2.09 16 23 C 0.04 0.72 7.29 22.47 0.16 0.88 16 24 F -0.13 -2.39 16.71 44.97 0.75 -1.63 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 1.08 7.87 -2.39 -0.02 1.06 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.05 1.13 8.09 -2.39 -0.02 1.11 16 29 H 0.06 1.21 7.87 -2.39 -0.02 1.19 16 30 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 36 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 39 H 0.16 2.34 7.45 -2.91 -0.02 2.32 16 40 H 0.19 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -66.76 350.22 5.38 -61.38 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 0.99 Total: 6.18 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 4.68 Total: -35.33 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: -1.74 Total: -67.65 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -1.33 Total: -9.56 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.75 Total: -1.63 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -66.76 5.38 -61.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224374953.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.329 kcal (2) G-P(sol) polarization free energy of solvation -66.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds