Wall clock time and date at job start Tue Mar 31 2020 05:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47052 * 2 1 4 4 O 1.42902 * 109.46960 * 240.00469 * 2 1 3 5 5 C 1.42898 * 114.00186 * 89.99675 * 4 2 1 6 6 C 1.52997 * 109.47319 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47482 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47482 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47452 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47088 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00496 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99572 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47371 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47443 * 120.00267 * 14 12 10 17 17 H 1.48504 * 109.46979 * 239.99975 * 14 12 10 18 18 C 1.50698 * 109.47335 * 120.00417 * 2 1 3 19 19 N 1.31872 * 119.63384 * 74.99702 * 18 2 1 20 20 C 1.31852 * 121.74827 * 180.02562 * 19 18 2 21 21 C 1.38233 * 120.81977 * 359.97438 * 20 19 18 22 22 C 1.38589 * 119.18831 * 0.02562 * 21 20 19 23 23 C 1.38421 * 119.63773 * 254.72698 * 18 2 1 24 24 F 1.35106 * 120.43943 * 359.97438 * 23 18 2 25 25 H 1.09005 * 109.47615 * 59.99772 * 1 2 3 26 26 H 1.09006 * 109.47596 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47046 * 299.99764 * 1 2 3 28 28 H 1.09002 * 109.47259 * 300.00293 * 5 4 2 29 29 H 1.09001 * 109.47074 * 60.00315 * 5 4 2 30 30 H 1.09002 * 109.47153 * 300.00307 * 6 5 4 31 31 H 1.08998 * 109.47533 * 59.99936 * 6 5 4 32 32 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 33 33 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 34 34 H 1.09002 * 109.47153 * 300.00216 * 8 7 6 35 35 H 1.09001 * 109.47289 * 60.00300 * 8 7 6 36 36 H 1.09002 * 109.46935 * 300.00125 * 9 8 7 37 37 H 1.09001 * 109.46812 * 59.99783 * 9 8 7 38 38 H 0.97000 * 120.00354 * 179.97438 * 13 12 10 39 39 H 1.08000 * 119.58792 * 179.97438 * 20 19 18 40 40 H 1.07999 * 120.40687 * 180.02562 * 21 20 19 41 41 H 1.08011 * 120.79921 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.1999 0.1830 -2.2941 6 6 2.7077 -0.6406 -3.4793 7 6 2.9157 0.2766 -4.6860 8 6 3.4240 -0.5469 -5.8710 9 6 3.6326 0.3704 -7.0777 10 6 4.1327 -0.4409 -8.2450 11 1 4.2869 -1.5043 -8.1370 12 6 4.3936 0.1746 -9.4509 13 7 4.2054 1.4695 -9.5826 14 14 5.0128 -0.8311 -10.8981 15 1 5.1396 -2.2544 -10.4937 16 1 4.0525 -0.7200 -12.0253 17 1 6.3393 -0.3185 -11.3257 18 6 2.0323 -0.7105 1.2304 19 7 1.9700 -2.0261 1.2948 20 6 2.3969 -2.6901 2.3509 21 6 2.9306 -2.0239 3.4382 22 6 3.0135 -0.6408 3.4093 23 6 2.5593 0.0247 2.2781 24 9 2.6259 1.3721 2.2035 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.2536 0.6548 -2.5588 29 1 2.9319 0.9514 -2.0451 30 1 3.6539 -1.1127 -3.2149 31 1 1.9756 -1.4087 -3.7283 32 1 1.9697 0.7491 -4.9506 33 1 3.6481 1.0444 -4.4368 34 1 4.3701 -1.0190 -5.6062 35 1 2.6919 -1.3150 -6.1205 36 1 2.6867 0.8429 -7.3427 37 1 4.3649 1.1383 -6.8280 38 1 4.3893 1.9026 -10.4308 39 1 2.3288 -3.7678 2.3666 40 1 3.2786 -2.5745 4.2996 41 1 3.4255 -0.0939 4.2446 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224377201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:59 Heat of formation + Delta-G solvation = -85.711184 kcal Electronic energy + Delta-G solvation = -20775.680660 eV Core-core repulsion = 17376.262341 eV Total energy + Delta-G solvation = -3399.418320 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.41227 -40.57773 -38.29931 -35.38672 -33.53599 -32.71175 -32.21411 -30.30684 -29.66170 -26.44085 -25.04094 -23.94229 -23.26336 -21.72315 -20.95678 -19.97797 -18.16037 -17.76604 -17.11473 -16.32374 -16.21941 -16.01418 -15.78135 -15.17383 -14.51189 -14.42682 -14.36890 -13.80484 -13.54644 -13.45207 -13.08305 -12.81255 -12.63810 -12.40880 -12.05163 -11.77099 -11.52740 -11.27819 -10.93910 -10.90491 -10.44081 -10.42560 -10.34265 -10.30233 -9.99976 -9.59821 -9.57435 -9.29905 -9.19997 -8.95263 -8.29955 -5.95006 -3.96798 0.43724 0.65319 3.11210 3.34260 3.38204 3.41448 3.46311 3.68013 3.85963 4.24386 4.32608 4.45226 4.50628 4.76741 4.89890 4.95898 5.18278 5.18856 5.29206 5.32341 5.39637 5.40652 5.50019 5.54205 5.61488 5.77873 5.81571 5.94405 6.14048 6.15823 6.34778 6.47903 6.56863 6.87568 7.01108 7.15045 7.23298 7.50725 7.74829 7.90465 8.06425 8.49916 9.11049 9.66984 11.16460 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034431 B = 0.002275 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.034600 B =12306.126804 C =12546.982288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.136 3.864 3 H 0.079 0.921 4 O -0.363 6.363 5 C 0.058 3.942 6 C -0.115 4.115 7 C -0.116 4.116 8 C -0.109 4.109 9 C 0.019 3.981 10 C -0.518 4.518 11 H 0.055 0.945 12 C 0.054 3.946 13 N -0.897 5.897 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.108 3.892 19 N -0.429 5.429 20 C 0.091 3.909 21 C -0.146 4.146 22 C -0.109 4.109 23 C 0.054 3.946 24 F -0.128 7.128 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.259 0.741 39 H 0.166 0.834 40 H 0.146 0.854 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.636 -3.740 29.825 30.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.077 3.923 3 H 0.097 0.903 4 O -0.282 6.282 5 C -0.018 4.018 6 C -0.152 4.152 7 C -0.153 4.153 8 C -0.147 4.147 9 C -0.018 4.018 10 C -0.556 4.556 11 H 0.073 0.927 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.031 4.031 19 N -0.137 5.137 20 C -0.067 4.067 21 C -0.166 4.166 22 C -0.136 4.136 23 C 0.032 3.968 24 F -0.106 7.106 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.183 0.817 40 H 0.164 0.836 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.932 -4.211 28.969 29.869 hybrid contribution 0.751 0.544 -0.042 0.928 sum -5.181 -3.666 28.927 29.616 Atomic orbital electron populations 1.22222 0.94061 1.03723 1.02463 1.20721 0.94450 0.94274 0.82895 0.90334 1.88060 1.86249 1.34787 1.19115 1.22762 0.99460 0.93309 0.86264 1.21574 1.01757 0.98917 0.92970 1.21590 1.01141 0.98184 0.94410 1.21611 0.99366 0.98671 0.95047 1.19119 0.96868 0.94568 0.91236 1.21339 1.43560 0.94708 0.96022 0.92669 1.25043 0.95832 0.94914 0.98847 1.69977 1.49462 1.09044 1.25194 0.86550 0.78447 0.80461 0.82635 1.19741 1.21044 1.21060 1.21312 0.96825 0.90365 0.94636 1.67613 1.13826 1.07075 1.25144 1.22992 0.94224 1.01107 0.88386 1.22148 0.99961 0.93782 1.00685 1.21649 0.99191 0.95397 0.97343 1.18545 1.03065 0.78176 0.97019 1.91527 1.94251 1.28396 1.96441 0.91205 0.90843 0.91881 0.93184 0.93411 0.91520 0.91309 0.92395 0.92469 0.93439 0.93382 0.96686 0.96711 0.93138 0.81682 0.83604 0.83334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 9.51 37.16 0.35 -1.29 16 2 C 0.14 1.57 2.97 -27.89 -0.08 1.48 16 3 H 0.08 0.83 6.90 -51.93 -0.36 0.48 16 4 O -0.36 -5.12 9.83 -35.23 -0.35 -5.47 16 5 C 0.06 0.78 5.75 37.16 0.21 0.99 16 6 C -0.11 -1.74 5.58 -26.74 -0.15 -1.89 16 7 C -0.12 -2.01 5.21 -26.74 -0.14 -2.15 16 8 C -0.11 -2.34 5.15 -26.73 -0.14 -2.47 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 11 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 12 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -27.59 13.29 55.43 0.74 -26.86 16 14 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 15 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 C 0.11 1.23 5.76 -82.51 -0.48 0.75 16 19 N -0.43 -4.92 10.10 -9.42 -0.10 -5.02 16 20 C 0.09 0.71 11.18 -17.54 -0.20 0.52 16 21 C -0.15 -0.86 10.11 -39.45 -0.40 -1.26 16 22 C -0.11 -0.77 10.16 -39.22 -0.40 -1.16 16 23 C 0.05 0.52 7.28 -39.28 -0.29 0.23 16 24 F -0.13 -1.28 16.28 2.25 0.04 -1.24 16 25 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.61 7.87 -51.93 -0.41 0.20 16 29 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16 41 H 0.15 0.66 8.06 -52.48 -0.42 0.23 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -33.13 350.93 -8.28 -41.41 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -6.63 Total: -5.40 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -2.25 Total: -19.84 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.64 Total: -31.88 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.35 Total: -5.47 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.13 -8.28 -41.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.299 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds