Wall clock time and date at job start Tue Mar 31 2020 05:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47052 * 2 1 4 4 O 1.42902 * 109.46960 * 240.00469 * 2 1 3 5 5 C 1.42898 * 114.00186 * 89.99675 * 4 2 1 6 6 C 1.52997 * 109.47319 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47482 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47482 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47452 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47088 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00496 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99572 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47371 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47443 * 120.00267 * 14 12 10 17 17 H 1.48504 * 109.46979 * 239.99975 * 14 12 10 18 18 C 1.50698 * 109.47335 * 120.00417 * 2 1 3 19 19 N 1.31872 * 119.63384 * 74.99702 * 18 2 1 20 20 C 1.31852 * 121.74827 * 180.02562 * 19 18 2 21 21 C 1.38233 * 120.81977 * 359.97438 * 20 19 18 22 22 C 1.38589 * 119.18831 * 0.02562 * 21 20 19 23 23 C 1.38421 * 119.63773 * 254.72698 * 18 2 1 24 24 F 1.35106 * 120.43943 * 359.97438 * 23 18 2 25 25 H 1.09005 * 109.47615 * 59.99772 * 1 2 3 26 26 H 1.09006 * 109.47596 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47046 * 299.99764 * 1 2 3 28 28 H 1.09002 * 109.47259 * 300.00293 * 5 4 2 29 29 H 1.09001 * 109.47074 * 60.00315 * 5 4 2 30 30 H 1.09002 * 109.47153 * 300.00307 * 6 5 4 31 31 H 1.08998 * 109.47533 * 59.99936 * 6 5 4 32 32 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 33 33 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 34 34 H 1.09002 * 109.47153 * 300.00216 * 8 7 6 35 35 H 1.09001 * 109.47289 * 60.00300 * 8 7 6 36 36 H 1.09002 * 109.46935 * 300.00125 * 9 8 7 37 37 H 1.09001 * 109.46812 * 59.99783 * 9 8 7 38 38 H 0.97000 * 120.00354 * 179.97438 * 13 12 10 39 39 H 1.08000 * 119.58792 * 179.97438 * 20 19 18 40 40 H 1.07999 * 120.40687 * 180.02562 * 21 20 19 41 41 H 1.08011 * 120.79921 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.1999 0.1830 -2.2941 6 6 2.7077 -0.6406 -3.4793 7 6 2.9157 0.2766 -4.6860 8 6 3.4240 -0.5469 -5.8710 9 6 3.6326 0.3704 -7.0777 10 6 4.1327 -0.4409 -8.2450 11 1 4.2869 -1.5043 -8.1370 12 6 4.3936 0.1746 -9.4509 13 7 4.2054 1.4695 -9.5826 14 14 5.0128 -0.8311 -10.8981 15 1 5.1396 -2.2544 -10.4937 16 1 4.0525 -0.7200 -12.0253 17 1 6.3393 -0.3185 -11.3257 18 6 2.0323 -0.7105 1.2304 19 7 1.9700 -2.0261 1.2948 20 6 2.3969 -2.6901 2.3509 21 6 2.9306 -2.0239 3.4382 22 6 3.0135 -0.6408 3.4093 23 6 2.5593 0.0247 2.2781 24 9 2.6259 1.3721 2.2035 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.2536 0.6548 -2.5588 29 1 2.9319 0.9514 -2.0451 30 1 3.6539 -1.1127 -3.2149 31 1 1.9756 -1.4087 -3.7283 32 1 1.9697 0.7491 -4.9506 33 1 3.6481 1.0444 -4.4368 34 1 4.3701 -1.0190 -5.6062 35 1 2.6919 -1.3150 -6.1205 36 1 2.6867 0.8429 -7.3427 37 1 4.3649 1.1383 -6.8280 38 1 4.3893 1.9026 -10.4308 39 1 2.3288 -3.7678 2.3666 40 1 3.2786 -2.5745 4.2996 41 1 3.4255 -0.0939 4.2446 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224377201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:58 Heat of formation + Delta-G solvation = -104.752540 kcal Electronic energy + Delta-G solvation = -20776.506356 eV Core-core repulsion = 17376.262341 eV Total energy + Delta-G solvation = -3400.244015 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.11034 -41.22628 -39.26034 -36.96339 -35.02100 -33.98568 -33.02469 -31.83899 -30.50471 -28.16608 -25.84254 -25.12985 -24.37513 -22.53423 -22.40261 -21.68974 -18.83383 -18.52974 -18.37062 -17.79458 -17.11709 -17.01824 -16.79665 -16.52345 -15.85960 -15.82659 -14.94645 -14.70552 -14.59101 -14.43696 -14.17878 -14.09794 -13.79623 -13.53113 -13.32783 -13.17216 -13.02368 -12.77647 -12.62857 -12.30742 -12.09456 -11.94267 -11.76795 -11.35765 -11.30675 -11.01026 -10.91760 -10.78116 -10.55984 -10.41309 -9.94036 -8.20397 -6.31554 -0.18332 0.08286 1.39290 1.39725 1.53504 2.37243 2.41689 2.67631 2.97374 3.12228 3.20540 3.61806 3.71292 3.94810 3.98780 4.01484 4.11429 4.18680 4.30171 4.40842 4.42350 4.44163 4.59684 4.69345 4.72502 4.82904 4.86826 4.88387 4.96612 4.99867 5.08098 5.16162 5.29945 5.30249 5.38712 5.55453 5.59427 5.78228 5.86952 6.18995 6.26544 6.85895 6.87209 7.37613 8.91685 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034431 B = 0.002275 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.034600 B =12306.126804 C =12546.982288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 H 0.082 0.918 4 O -0.383 6.383 5 C 0.062 3.938 6 C -0.105 4.105 7 C -0.106 4.106 8 C -0.099 4.099 9 C 0.021 3.979 10 C -0.544 4.544 11 H 0.058 0.942 12 C -0.004 4.004 13 N -0.934 5.934 14 Si 0.967 3.033 15 H -0.263 1.263 16 H -0.277 1.277 17 H -0.277 1.277 18 C 0.082 3.918 19 N -0.467 5.467 20 C 0.080 3.920 21 C -0.129 4.129 22 C -0.106 4.106 23 C 0.037 3.963 24 F -0.135 7.135 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.050 0.950 36 H -0.008 1.008 37 H -0.009 1.009 38 H 0.264 0.736 39 H 0.190 0.810 40 H 0.187 0.813 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.213 -4.987 31.406 32.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.070 3.930 3 H 0.100 0.900 4 O -0.302 6.302 5 C -0.014 4.014 6 C -0.143 4.143 7 C -0.144 4.144 8 C -0.137 4.137 9 C -0.016 4.016 10 C -0.582 4.582 11 H 0.076 0.924 12 C -0.201 4.201 13 N -0.575 5.575 14 Si 0.791 3.209 15 H -0.187 1.187 16 H -0.202 1.202 17 H -0.202 1.202 18 C -0.057 4.057 19 N -0.175 5.175 20 C -0.077 4.077 21 C -0.148 4.148 22 C -0.133 4.133 23 C 0.015 3.985 24 F -0.114 7.114 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.010 0.990 37 H 0.009 0.991 38 H 0.073 0.927 39 H 0.207 0.793 40 H 0.205 0.795 41 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.516 -5.455 30.565 31.534 hybrid contribution 0.629 0.907 -0.445 1.190 sum -4.887 -4.548 30.120 30.851 Atomic orbital electron populations 1.22164 0.93178 1.03162 1.03309 1.20895 0.95263 0.94431 0.82367 0.89985 1.88012 1.86654 1.35670 1.19905 1.22652 1.00163 0.92898 0.85726 1.21396 1.01649 0.98480 0.92763 1.21433 1.01107 0.98005 0.93818 1.21445 0.99736 0.98069 0.94448 1.19049 0.94768 0.94675 0.93090 1.21772 1.44014 0.95177 0.97266 0.92360 1.26023 0.95821 0.96138 1.02112 1.70103 1.50212 1.10860 1.26280 0.85376 0.77998 0.79025 0.78508 1.18672 1.20210 1.20239 1.21262 0.98567 0.90788 0.95067 1.67550 1.15407 1.07386 1.27199 1.23539 0.93683 1.02343 0.88172 1.22577 0.97772 0.93431 1.01002 1.22065 0.98087 0.96076 0.97037 1.18742 1.03941 0.77963 0.97859 1.91501 1.94421 1.28905 1.96559 0.90828 0.92022 0.90497 0.92047 0.92784 0.91926 0.91444 0.92045 0.92320 0.93327 0.93160 0.98968 0.99057 0.92747 0.79329 0.79536 0.80529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.51 71.98 0.68 -2.47 16 2 C 0.13 2.99 2.97 29.85 0.09 3.08 16 3 H 0.08 1.76 6.90 -2.39 -0.02 1.74 16 4 O -0.38 -10.83 9.83 -148.98 -1.46 -12.29 16 5 C 0.06 1.62 5.75 71.98 0.41 2.04 16 6 C -0.11 -3.15 5.58 30.59 0.17 -2.97 16 7 C -0.11 -3.68 5.21 30.59 0.16 -3.52 16 8 C -0.10 -4.28 5.15 30.60 0.16 -4.12 16 9 C 0.02 1.17 4.97 29.85 0.15 1.31 16 10 C -0.54 -32.21 9.11 25.60 0.23 -31.98 16 11 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 12 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 13 N -0.93 -58.26 13.29 21.45 0.28 -57.98 16 14 Si 0.97 45.42 29.54 68.60 2.03 47.45 16 15 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 C 0.08 1.84 5.76 42.60 0.25 2.09 16 19 N -0.47 -10.52 10.10 -183.71 -1.86 -12.38 16 20 C 0.08 1.12 11.18 84.69 0.95 2.07 16 21 C -0.13 -1.12 10.11 22.35 0.23 -0.89 16 22 C -0.11 -1.23 10.16 22.51 0.23 -1.00 16 23 C 0.04 0.68 7.28 22.47 0.16 0.84 16 24 F -0.14 -2.66 16.28 44.97 0.73 -1.93 16 25 H 0.07 1.34 7.87 -2.38 -0.02 1.32 16 26 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.45 7.87 -2.39 -0.02 1.44 16 29 H 0.05 1.34 8.09 -2.39 -0.02 1.32 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 36 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.19 0.06 8.06 -2.91 -0.02 0.04 16 41 H 0.18 0.95 8.06 -2.90 -0.02 0.93 16 Total: -1.00 -72.61 350.93 5.04 -67.57 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 0.99 Total: 4.84 kcal Atomic # 6 Polarization: -39.61 SS G_CDS: 4.33 Total: -35.29 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -1.57 Total: -70.36 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -1.46 Total: -12.29 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.73 Total: -1.93 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -72.61 5.04 -67.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.179 kcal (2) G-P(sol) polarization free energy of solvation -72.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds