Wall clock time and date at job start Tue Mar 31 2020 05:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 O 1.42903 * 109.46726 * 239.99756 * 2 1 3 5 5 C 1.42901 * 113.99972 * 90.00358 * 4 2 1 6 6 C 1.53001 * 109.47367 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.47073 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.46775 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.46849 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47175 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99720 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00320 * 180.02562 * 10 9 8 13 13 N 1.31520 * 120.00245 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 120.00025 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.46753 * 89.99804 * 14 12 10 16 16 H 1.48497 * 109.47066 * 209.99734 * 14 12 10 17 17 H 1.48497 * 109.46850 * 330.00225 * 14 12 10 18 18 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 19 19 C 1.38550 * 120.42779 * 94.72266 * 18 2 1 20 20 C 1.38715 * 118.44731 * 179.73702 * 19 18 2 21 21 C 1.38140 * 119.22299 * 0.55916 * 20 19 18 22 22 N 1.31910 * 120.79758 * 359.70038 * 21 20 19 23 23 C 1.32062 * 121.68445 * 0.02562 * 22 21 20 24 24 F 1.35102 * 119.64215 * 179.97438 * 23 22 21 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 1.08999 * 109.46765 * 300.00001 * 5 4 2 29 29 H 1.09003 * 109.47264 * 59.99735 * 5 4 2 30 30 H 1.08999 * 109.46850 * 300.00261 * 6 5 4 31 31 H 1.09003 * 109.46783 * 59.99884 * 6 5 4 32 32 H 1.08999 * 109.47515 * 299.99877 * 7 6 5 33 33 H 1.09003 * 109.47391 * 60.00281 * 7 6 5 34 34 H 1.08992 * 109.47213 * 300.00000 * 8 7 6 35 35 H 1.08998 * 109.47191 * 60.00641 * 8 7 6 36 36 H 1.08999 * 109.47698 * 299.99850 * 9 8 7 37 37 H 1.09003 * 109.47134 * 60.00208 * 9 8 7 38 38 H 0.96998 * 119.99880 * 179.97438 * 13 12 10 39 39 H 1.07999 * 120.77765 * 359.97438 * 19 18 2 40 40 H 1.08008 * 120.38482 * 180.26081 * 20 19 18 41 41 H 1.08001 * 119.60464 * 179.68516 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.2000 0.1828 -2.2941 6 6 2.7089 -0.6407 -3.4789 7 6 2.9158 0.2763 -4.6860 8 6 3.4241 -0.5475 -5.8710 9 6 3.6303 0.3694 -7.0783 10 6 4.1316 -0.4417 -8.2453 11 1 4.2871 -1.5050 -8.1367 12 6 4.3917 0.1735 -9.4514 13 7 4.8287 -0.5345 -10.4700 14 14 4.1235 2.0126 -9.6389 15 1 5.3724 2.7336 -9.2847 16 1 3.7571 2.3186 -11.0451 17 1 3.0278 2.4476 -8.7360 18 6 2.0323 -0.7104 1.2305 19 6 2.3589 -2.0559 1.1797 20 6 2.8226 -2.6673 2.3353 21 6 2.9320 -1.9238 3.4944 22 7 2.6074 -0.6454 3.5099 23 6 2.1676 -0.0282 2.4283 24 9 1.8464 1.2825 2.4910 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.2538 0.6546 -2.5588 29 1 2.9320 0.9512 -2.0451 30 1 3.6553 -1.1122 -3.2139 31 1 1.9773 -1.4093 -3.7281 32 1 1.9692 0.7474 -4.9509 33 1 3.6472 1.0452 -4.4371 34 1 4.3705 -1.0189 -5.6064 35 1 2.6923 -1.3160 -6.1198 36 1 2.6837 0.8405 -7.3428 37 1 4.3619 1.1383 -6.8298 38 1 5.0113 -0.1018 -11.3187 39 1 2.2586 -2.6146 0.2610 40 1 3.0903 -3.7137 2.3300 41 1 3.2875 -2.3949 4.3989 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224377224.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:03 Heat of formation + Delta-G solvation = -80.916237 kcal Electronic energy + Delta-G solvation = -20827.519627 eV Core-core repulsion = 17428.309232 eV Total energy + Delta-G solvation = -3399.210395 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.40001 -40.58858 -38.57841 -35.65563 -33.88644 -32.70465 -32.14411 -30.62283 -29.74393 -26.88218 -24.93898 -24.02256 -23.18109 -21.83039 -20.97306 -20.04671 -18.43670 -17.84126 -16.86664 -16.62796 -16.50280 -16.08335 -15.94709 -15.25841 -14.70936 -14.22703 -14.17149 -13.88549 -13.70939 -13.36989 -13.29757 -13.01198 -12.83866 -12.52386 -12.16574 -12.00413 -11.95506 -11.47801 -11.12419 -11.05566 -10.67766 -10.55664 -10.31004 -10.20213 -9.88859 -9.81175 -9.68913 -9.48814 -9.29366 -9.14961 -8.52305 -6.02845 -4.00498 0.43663 0.70928 3.02673 3.14990 3.31274 3.35918 3.38535 3.42393 4.02339 4.27531 4.41202 4.46423 4.55107 4.72424 4.77777 5.00997 5.01850 5.11181 5.24144 5.26101 5.31203 5.35628 5.43667 5.55087 5.58830 5.65727 5.69769 5.78675 5.94284 6.15361 6.16367 6.25866 6.36221 6.64449 6.74022 6.95103 6.97410 7.18097 7.34066 7.46803 7.82083 8.56396 9.02564 9.60033 11.10762 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034493 B = 0.002371 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.564209 B =11807.722747 C =12183.082030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.132 3.868 3 H 0.076 0.924 4 O -0.378 6.378 5 C 0.062 3.938 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.101 4.101 9 C -0.015 4.015 10 C -0.520 4.520 11 H 0.071 0.929 12 C 0.064 3.936 13 N -0.905 5.905 14 Si 0.881 3.119 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.266 1.266 18 C -0.157 4.157 19 C -0.022 4.022 20 C -0.183 4.183 21 C 0.131 3.869 22 N -0.514 5.514 23 C 0.311 3.689 24 F -0.112 7.112 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.014 0.986 37 H 0.010 0.990 38 H 0.262 0.738 39 H 0.154 0.846 40 H 0.146 0.854 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.693 -1.454 28.358 29.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.073 3.927 3 H 0.094 0.906 4 O -0.298 6.298 5 C -0.014 4.014 6 C -0.153 4.153 7 C -0.157 4.157 8 C -0.139 4.139 9 C -0.053 4.053 10 C -0.558 4.558 11 H 0.089 0.911 12 C -0.137 4.137 13 N -0.544 5.544 14 Si 0.708 3.292 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.190 1.190 18 C -0.160 4.160 19 C -0.047 4.047 20 C -0.203 4.203 21 C -0.025 4.025 22 N -0.228 5.228 23 C 0.157 3.843 24 F -0.091 7.091 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.172 0.828 40 H 0.164 0.836 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.543 -1.100 28.928 29.915 hybrid contribution -0.212 1.043 -0.942 1.421 sum -7.755 -0.057 27.986 29.041 Atomic orbital electron populations 1.22251 0.94215 1.03332 1.02821 1.20613 0.93995 0.95054 0.83053 0.90598 1.87870 1.86497 1.35692 1.19729 1.22735 0.99592 0.93207 0.85882 1.21579 1.01914 0.98927 0.92925 1.21626 1.01157 0.98287 0.94591 1.21437 1.00078 0.98370 0.94017 1.19590 0.96243 0.95578 0.93871 1.21188 1.43674 0.96532 0.94390 0.91092 1.25060 0.94651 0.98118 0.95858 1.69923 1.46099 1.35976 1.02450 0.86756 0.79073 0.86146 0.77175 1.20345 1.21433 1.19032 1.20574 1.04768 0.96085 0.94608 1.21484 0.91416 0.92673 0.99173 1.22277 1.02127 1.02380 0.93549 1.22571 0.94052 0.87379 0.98522 1.67061 1.13866 1.12556 1.29310 1.17884 0.96800 0.79657 0.89963 1.91622 1.89486 1.31290 1.96674 0.91382 0.91518 0.91263 0.93096 0.93231 0.91272 0.91201 0.92368 0.92399 0.92807 0.92768 0.96736 0.97185 0.92794 0.82801 0.83584 0.81492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 9.51 37.16 0.35 -1.03 16 2 C 0.13 1.25 2.72 -27.88 -0.08 1.18 16 3 H 0.08 0.71 7.45 -51.93 -0.39 0.32 16 4 O -0.38 -4.17 8.91 -35.23 -0.31 -4.48 16 5 C 0.06 0.69 5.75 37.16 0.21 0.90 16 6 C -0.12 -1.48 5.58 -26.73 -0.15 -1.63 16 7 C -0.12 -1.81 5.21 -26.73 -0.14 -1.95 16 8 C -0.10 -1.98 5.15 -26.73 -0.14 -2.11 16 9 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 10 C -0.52 -15.03 9.66 -34.44 -0.33 -15.37 16 11 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 12 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 13 N -0.91 -28.24 13.96 55.43 0.77 -27.46 16 14 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 18 C -0.16 -1.51 5.09 -104.41 -0.53 -2.04 16 19 C -0.02 -0.18 9.47 -39.29 -0.37 -0.55 16 20 C -0.18 -1.17 10.11 -39.44 -0.40 -1.57 16 21 C 0.13 0.95 11.18 -17.55 -0.20 0.75 16 22 N -0.51 -5.37 10.37 -13.60 -0.14 -5.51 16 23 C 0.31 3.31 8.36 -17.35 -0.15 3.16 16 24 F -0.11 -1.24 16.60 2.25 0.04 -1.20 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.54 7.87 -51.93 -0.41 0.13 16 28 H 0.05 0.52 7.87 -51.93 -0.41 0.11 16 29 H 0.05 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 37 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 39 H 0.15 1.17 7.45 -52.49 -0.39 0.78 16 40 H 0.15 0.51 8.06 -52.48 -0.42 0.09 16 41 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 346.42 15.07 5.22 5.22 Total: -1.00 -32.39 346.42 -7.81 -40.20 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -6.60 Total: -5.08 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -2.12 Total: -18.95 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.63 Total: -32.97 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -0.31 Total: -4.48 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.39 -7.81 -40.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377224.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.717 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds