Wall clock time and date at job start Tue Mar 31 2020 05:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 O 1.42903 * 109.46726 * 239.99756 * 2 1 3 5 5 C 1.42901 * 113.99972 * 90.00358 * 4 2 1 6 6 C 1.53001 * 109.47367 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.47073 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.46775 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.46849 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47175 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99720 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00320 * 180.02562 * 10 9 8 13 13 N 1.31520 * 120.00245 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 120.00025 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.46753 * 89.99804 * 14 12 10 16 16 H 1.48497 * 109.47066 * 209.99734 * 14 12 10 17 17 H 1.48497 * 109.46850 * 330.00225 * 14 12 10 18 18 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 19 19 C 1.38550 * 120.42779 * 94.72266 * 18 2 1 20 20 C 1.38715 * 118.44731 * 179.73702 * 19 18 2 21 21 C 1.38140 * 119.22299 * 0.55916 * 20 19 18 22 22 N 1.31910 * 120.79758 * 359.70038 * 21 20 19 23 23 C 1.32062 * 121.68445 * 0.02562 * 22 21 20 24 24 F 1.35102 * 119.64215 * 179.97438 * 23 22 21 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 1.08999 * 109.46765 * 300.00001 * 5 4 2 29 29 H 1.09003 * 109.47264 * 59.99735 * 5 4 2 30 30 H 1.08999 * 109.46850 * 300.00261 * 6 5 4 31 31 H 1.09003 * 109.46783 * 59.99884 * 6 5 4 32 32 H 1.08999 * 109.47515 * 299.99877 * 7 6 5 33 33 H 1.09003 * 109.47391 * 60.00281 * 7 6 5 34 34 H 1.08992 * 109.47213 * 300.00000 * 8 7 6 35 35 H 1.08998 * 109.47191 * 60.00641 * 8 7 6 36 36 H 1.08999 * 109.47698 * 299.99850 * 9 8 7 37 37 H 1.09003 * 109.47134 * 60.00208 * 9 8 7 38 38 H 0.96998 * 119.99880 * 179.97438 * 13 12 10 39 39 H 1.07999 * 120.77765 * 359.97438 * 19 18 2 40 40 H 1.08008 * 120.38482 * 180.26081 * 20 19 18 41 41 H 1.08001 * 119.60464 * 179.68516 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.2000 0.1828 -2.2941 6 6 2.7089 -0.6407 -3.4789 7 6 2.9158 0.2763 -4.6860 8 6 3.4241 -0.5475 -5.8710 9 6 3.6303 0.3694 -7.0783 10 6 4.1316 -0.4417 -8.2453 11 1 4.2871 -1.5050 -8.1367 12 6 4.3917 0.1735 -9.4514 13 7 4.8287 -0.5345 -10.4700 14 14 4.1235 2.0126 -9.6389 15 1 5.3724 2.7336 -9.2847 16 1 3.7571 2.3186 -11.0451 17 1 3.0278 2.4476 -8.7360 18 6 2.0323 -0.7104 1.2305 19 6 2.3589 -2.0559 1.1797 20 6 2.8226 -2.6673 2.3353 21 6 2.9320 -1.9238 3.4944 22 7 2.6074 -0.6454 3.5099 23 6 2.1676 -0.0282 2.4283 24 9 1.8464 1.2825 2.4910 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.2538 0.6546 -2.5588 29 1 2.9320 0.9512 -2.0451 30 1 3.6553 -1.1122 -3.2139 31 1 1.9773 -1.4093 -3.7281 32 1 1.9692 0.7474 -4.9509 33 1 3.6472 1.0452 -4.4371 34 1 4.3705 -1.0189 -5.6064 35 1 2.6923 -1.3160 -6.1198 36 1 2.6837 0.8405 -7.3428 37 1 4.3619 1.1383 -6.8298 38 1 5.0113 -0.1018 -11.3187 39 1 2.2586 -2.6146 0.2610 40 1 3.0903 -3.7137 2.3300 41 1 3.2875 -2.3949 4.3989 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224377224.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:03 Heat of formation + Delta-G solvation = -99.776724 kcal Electronic energy + Delta-G solvation = -20828.337479 eV Core-core repulsion = 17428.309232 eV Total energy + Delta-G solvation = -3400.028247 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.15016 -41.22165 -39.37014 -37.02545 -35.09738 -34.26779 -32.86891 -32.12095 -30.43347 -28.42691 -25.65560 -25.01344 -24.32617 -22.54402 -22.22478 -21.68568 -19.10995 -18.87147 -18.51222 -17.53790 -17.26871 -16.92653 -16.78591 -16.32501 -15.87068 -15.84699 -14.96484 -14.78394 -14.65075 -14.59889 -14.14975 -14.09429 -13.79924 -13.66771 -13.48687 -13.25570 -13.10730 -12.71198 -12.67102 -12.13321 -11.95133 -11.79861 -11.70755 -11.37705 -11.29391 -11.19040 -10.98178 -10.85304 -10.75843 -10.55075 -9.92769 -8.29158 -6.33336 -0.17785 0.08970 1.36198 1.38234 1.50620 2.31331 2.36863 2.54342 2.64699 3.06142 3.39230 3.63078 3.82747 3.95783 4.01522 4.11418 4.13301 4.18985 4.29701 4.41898 4.44567 4.46267 4.68586 4.70975 4.72687 4.81077 4.86442 4.94593 5.01421 5.03886 5.11624 5.15523 5.20031 5.29275 5.35793 5.57866 5.60522 5.67314 5.69450 6.17199 6.30094 6.57474 6.75329 7.31428 8.87855 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034493 B = 0.002371 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.564209 B =11807.722747 C =12183.082030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.130 3.870 3 H 0.075 0.925 4 O -0.387 6.387 5 C 0.065 3.935 6 C -0.109 4.109 7 C -0.109 4.109 8 C -0.097 4.097 9 C -0.015 4.015 10 C -0.535 4.535 11 H 0.029 0.971 12 C -0.001 4.001 13 N -0.954 5.954 14 Si 0.955 3.045 15 H -0.267 1.267 16 H -0.284 1.284 17 H -0.244 1.244 18 C -0.165 4.165 19 C -0.032 4.032 20 C -0.168 4.168 21 C 0.128 3.872 22 N -0.541 5.541 23 C 0.287 3.713 24 F -0.123 7.123 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.020 0.980 37 H 0.018 0.982 38 H 0.266 0.734 39 H 0.159 0.841 40 H 0.180 0.820 41 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.298 -0.593 29.963 31.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.072 3.928 3 H 0.093 0.907 4 O -0.307 6.307 5 C -0.011 4.011 6 C -0.147 4.147 7 C -0.147 4.147 8 C -0.135 4.135 9 C -0.052 4.052 10 C -0.573 4.573 11 H 0.047 0.953 12 C -0.198 4.198 13 N -0.595 5.595 14 Si 0.778 3.222 15 H -0.192 1.192 16 H -0.210 1.210 17 H -0.167 1.167 18 C -0.168 4.168 19 C -0.058 4.058 20 C -0.188 4.188 21 C -0.028 4.028 22 N -0.256 5.256 23 C 0.134 3.866 24 F -0.102 7.102 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.036 0.964 38 H 0.075 0.925 39 H 0.176 0.824 40 H 0.198 0.802 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -8.157 -0.244 30.557 31.628 hybrid contribution 0.027 0.594 -1.417 1.537 sum -8.130 0.350 29.140 30.255 Atomic orbital electron populations 1.22215 0.93309 1.03447 1.03215 1.20679 0.94696 0.94892 0.82547 0.90728 1.87836 1.86762 1.36026 1.20058 1.22636 1.00286 0.92828 0.85362 1.21428 1.01848 0.98592 0.92789 1.21476 1.01582 0.98075 0.93528 1.21334 0.99847 0.98034 0.94271 1.19575 0.96187 0.95812 0.93628 1.21588 1.43739 0.95372 0.96614 0.95289 1.26111 0.94262 1.04049 0.95343 1.70085 1.47607 1.38537 1.03259 0.85587 0.79988 0.78978 0.77659 1.19163 1.21017 1.16731 1.20609 1.05280 0.96749 0.94199 1.21691 0.91663 0.92249 1.00170 1.22646 1.00024 1.03763 0.92357 1.23213 0.93046 0.86439 1.00142 1.67077 1.14704 1.14172 1.29626 1.18042 0.98316 0.79566 0.90657 1.91581 1.89796 1.32049 1.96774 0.91383 0.91175 0.90784 0.91939 0.92700 0.91685 0.91324 0.91374 0.91588 0.93609 0.93464 0.96126 0.96365 0.92540 0.82351 0.80214 0.78271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.51 71.98 0.68 -1.82 16 2 C 0.13 2.35 2.72 29.85 0.08 2.43 16 3 H 0.07 1.34 7.45 -2.39 -0.02 1.32 16 4 O -0.39 -7.92 8.91 -148.98 -1.33 -9.25 16 5 C 0.06 1.30 5.75 71.98 0.41 1.72 16 6 C -0.11 -2.59 5.58 30.59 0.17 -2.42 16 7 C -0.11 -3.08 5.21 30.59 0.16 -2.92 16 8 C -0.10 -3.72 5.15 30.60 0.16 -3.56 16 9 C -0.01 -0.69 4.04 29.85 0.12 -0.57 16 10 C -0.54 -31.51 9.66 25.60 0.25 -31.27 16 11 H 0.03 1.88 7.99 -2.91 -0.02 1.85 16 12 C 0.00 -0.09 5.47 84.65 0.46 0.38 16 13 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 14 Si 0.95 44.61 27.47 68.60 1.88 46.49 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 16 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 17 H -0.24 -10.46 6.54 99.48 0.65 -9.81 16 18 C -0.16 -3.03 5.09 -19.73 -0.10 -3.13 16 19 C -0.03 -0.47 9.47 22.46 0.21 -0.26 16 20 C -0.17 -1.71 10.11 22.36 0.23 -1.48 16 21 C 0.13 1.57 11.18 84.66 0.95 2.51 16 22 N -0.54 -10.85 10.37 -196.93 -2.04 -12.89 16 23 C 0.29 6.03 8.36 84.72 0.71 6.74 16 24 F -0.12 -2.76 16.60 44.97 0.75 -2.01 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.04 7.87 -2.39 -0.02 1.02 16 28 H 0.06 1.12 7.87 -2.39 -0.02 1.10 16 29 H 0.05 1.05 8.09 -2.39 -0.02 1.03 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 37 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 38 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 39 H 0.16 2.14 7.45 -2.91 -0.02 2.12 16 40 H 0.18 0.55 8.06 -2.91 -0.02 0.52 16 41 H 0.20 0.94 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -71.28 346.42 4.99 -66.29 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 0.94 Total: 5.56 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 4.49 Total: -33.64 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -1.74 Total: -73.44 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -1.33 Total: -9.25 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.75 Total: -2.01 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -71.28 4.99 -66.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377224.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.485 kcal (2) G-P(sol) polarization free energy of solvation -71.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds