Wall clock time and date at job start Tue Mar 31 2020 05:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38144 * 120.39334 * 2 1 4 4 N 1.31902 * 120.80155 * 179.97438 * 3 2 1 5 5 C 1.32057 * 121.68760 * 359.97438 * 4 3 2 6 6 F 1.35097 * 119.65520 * 180.02562 * 5 4 3 7 7 C 1.38519 * 120.70105 * 0.02562 * 5 4 3 8 8 C 1.50701 * 120.43246 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47060 * 35.00172 * 8 7 5 10 10 C 1.52997 * 109.47212 * 275.00117 * 8 7 5 11 11 O 1.42896 * 109.47417 * 155.00146 * 8 7 5 12 12 C 1.42896 * 114.00446 * 210.00046 * 11 8 7 13 13 C 1.52998 * 109.47357 * 179.97438 * 12 11 8 14 14 C 1.53001 * 109.46966 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47149 * 180.02562 * 14 13 12 16 16 C 1.50705 * 109.47390 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99875 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00349 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99517 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00359 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46788 * 59.99705 * 20 18 16 22 22 H 1.48495 * 109.47508 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47176 * 300.00450 * 20 18 16 24 24 C 1.38544 * 119.14008 * 0.25394 * 7 5 4 25 25 H 1.09008 * 109.46950 * 90.00077 * 1 2 3 26 26 H 1.08996 * 109.47778 * 210.00029 * 1 2 3 27 27 H 1.08999 * 109.47237 * 330.00726 * 1 2 3 28 28 H 1.08003 * 119.59637 * 359.96781 * 3 2 1 29 29 H 1.09002 * 109.47153 * 299.99998 * 10 8 7 30 30 H 1.08998 * 109.47533 * 59.99628 * 10 8 7 31 31 H 1.08996 * 109.47853 * 179.97438 * 10 8 7 32 32 H 1.08999 * 109.47115 * 300.00419 * 12 11 8 33 33 H 1.09000 * 109.46923 * 59.99773 * 12 11 8 34 34 H 1.08997 * 109.47390 * 299.99916 * 13 12 11 35 35 H 1.09000 * 109.47045 * 60.00147 * 13 12 11 36 36 H 1.09007 * 109.47003 * 299.99973 * 14 13 12 37 37 H 1.08996 * 109.47521 * 59.99809 * 14 13 12 38 38 H 1.08997 * 109.47016 * 299.99718 * 15 14 13 39 39 H 1.09000 * 109.47235 * 59.99837 * 15 14 13 40 40 H 0.97001 * 119.99948 * 179.97438 * 19 18 16 41 41 H 1.08001 * 120.77926 * 179.72671 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1916 0.0000 4 7 3.5249 1.2010 0.0005 5 6 4.2265 0.0823 0.0015 6 9 5.5763 0.1398 0.0025 7 6 3.5933 -1.1497 0.0016 8 6 4.4000 -2.4226 0.0022 9 1 5.3053 -2.2788 0.5920 10 6 4.7798 -2.7864 -1.4346 11 8 3.6235 -3.4785 0.5715 12 6 4.3994 -4.4777 1.2359 13 6 3.4695 -5.5516 1.8040 14 6 4.3003 -6.6210 2.5159 15 6 3.3705 -7.6953 3.0835 16 6 4.1888 -8.7484 3.7852 17 1 5.2646 -8.6605 3.8223 18 6 3.5641 -9.8241 4.3800 19 7 2.2541 -9.9308 4.3352 20 14 4.5785 -11.1298 5.2492 21 1 5.3469 -10.5044 6.3555 22 1 3.6759 -12.1717 5.8012 23 1 5.5192 -11.7507 4.2825 24 6 2.2087 -1.1966 -0.0048 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6657 2.1268 -0.0005 29 1 3.8744 -2.9303 -2.0244 30 1 5.3721 -1.9811 -1.8689 31 1 5.3636 -3.7068 -1.4342 32 1 5.0900 -4.9330 0.5260 33 1 4.9634 -4.0192 2.0482 34 1 2.7792 -5.0960 2.5140 35 1 2.9052 -6.0102 0.9919 36 1 4.9909 -7.0768 1.8062 37 1 4.8643 -6.1622 3.3279 38 1 2.6797 -7.2399 3.7930 39 1 2.8069 -8.1541 2.2711 40 1 1.8146 -10.6878 4.7533 41 1 1.6877 -2.1426 -0.0094 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224690520.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:22 Heat of formation + Delta-G solvation = -85.148551 kcal Electronic energy + Delta-G solvation = -21107.030138 eV Core-core repulsion = 17707.636216 eV Total energy + Delta-G solvation = -3399.393922 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.26350 -40.60444 -38.39261 -34.98842 -33.84887 -33.46107 -32.14916 -30.00824 -28.59293 -27.37079 -25.07848 -24.64163 -23.07936 -21.72689 -21.20231 -20.02651 -18.30353 -17.88368 -16.48971 -16.37008 -16.20407 -15.69175 -15.59231 -14.86950 -14.46891 -14.27538 -14.08055 -14.03359 -13.72561 -13.20959 -13.05141 -12.74895 -12.68459 -12.57927 -12.36767 -12.20179 -11.78027 -11.48626 -11.15885 -11.00869 -10.75489 -10.58542 -10.43237 -10.07268 -10.04235 -9.70084 -9.55637 -9.32988 -9.07458 -8.99663 -8.34230 -5.99473 -4.01994 0.54207 0.82758 3.16920 3.24405 3.33305 3.37640 3.40041 3.54835 4.12820 4.37334 4.42598 4.46789 4.61417 4.75952 4.93638 4.95626 5.23585 5.25358 5.32094 5.34707 5.36329 5.38761 5.43495 5.61093 5.65606 5.70424 5.75833 5.88659 5.92248 6.07957 6.12191 6.29699 6.43892 6.75031 6.88509 7.05903 7.25128 7.29519 7.68062 7.82939 8.00852 8.43083 9.05066 9.61941 11.11881 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027156 B = 0.002663 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.814297 B =10512.182444 C =11131.288826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.149 4.149 3 C 0.129 3.871 4 N -0.510 5.510 5 C 0.303 3.697 6 F -0.112 7.112 7 C -0.150 4.150 8 C 0.131 3.869 9 H 0.076 0.924 10 C -0.168 4.168 11 O -0.379 6.379 12 C 0.063 3.937 13 C -0.115 4.115 14 C -0.108 4.108 15 C 0.022 3.978 16 C -0.522 4.522 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.024 4.024 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.166 0.834 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.261 0.739 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.965 21.630 -11.826 24.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.151 4.151 3 C -0.028 4.028 4 N -0.223 5.223 5 C 0.149 3.851 6 F -0.091 7.091 7 C -0.153 4.153 8 C 0.072 3.928 9 H 0.094 0.906 10 C -0.226 4.226 11 O -0.298 6.298 12 C -0.013 4.013 13 C -0.153 4.153 14 C -0.146 4.146 15 C -0.015 4.015 16 C -0.560 4.560 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.049 4.049 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.183 0.817 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.034 0.966 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.796 22.294 -11.777 25.226 hybrid contribution 0.706 -1.468 0.554 1.720 sum -0.090 20.826 -11.224 23.658 Atomic orbital electron populations 1.20723 0.89322 1.03692 1.02906 1.21038 0.98337 0.93682 1.02007 1.22422 0.87413 0.98184 0.94792 1.67028 1.09769 1.29902 1.15592 1.17847 0.78603 0.89271 0.99365 1.91611 1.27311 1.96930 1.93294 1.20586 0.95706 0.93954 1.05059 1.20605 0.92618 0.84456 0.95135 0.90647 1.22244 1.02405 1.02358 0.95546 1.87882 1.34185 1.34504 1.73256 1.22796 0.94656 0.88888 0.94969 1.21641 0.98480 0.94935 1.00240 1.21583 0.98758 0.95884 0.98351 1.19079 0.94410 0.92211 0.95798 1.21236 0.93324 1.06846 1.34637 0.92771 1.25030 0.94902 0.98153 0.96402 1.69956 1.08004 1.30683 1.44881 0.86657 0.80013 0.81355 0.79972 1.20254 1.21277 1.20245 1.21379 0.92118 0.99219 0.92187 0.90612 0.90670 0.90933 0.81674 0.91452 0.91643 0.91228 0.93273 0.93412 0.91691 0.91607 0.93286 0.93309 0.96561 0.96544 0.92947 0.82784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.03 36.00 0.36 -0.25 16 2 C -0.15 -1.25 5.90 -104.48 -0.62 -1.87 16 3 C 0.13 1.14 10.86 -17.56 -0.19 0.95 16 4 N -0.51 -6.04 10.37 -13.60 -0.14 -6.18 16 5 C 0.30 3.68 8.36 -17.35 -0.15 3.53 16 6 F -0.11 -1.40 16.60 2.25 0.04 -1.36 16 7 C -0.15 -1.71 5.09 -104.40 -0.53 -2.24 16 8 C 0.13 1.50 2.72 -27.88 -0.08 1.43 16 9 H 0.08 0.85 7.45 -51.93 -0.39 0.46 16 10 C -0.17 -1.67 9.51 37.16 0.35 -1.31 16 11 O -0.38 -5.12 8.91 -35.23 -0.31 -5.43 16 12 C 0.06 0.89 5.75 37.16 0.21 1.10 16 13 C -0.12 -1.96 5.58 -26.73 -0.15 -2.11 16 14 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 15 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 16 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 20 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 24 C -0.02 -0.24 9.15 -39.29 -0.36 -0.60 16 25 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 26 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 27 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 28 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.67 7.87 -51.93 -0.41 0.26 16 32 H 0.05 0.65 7.87 -51.93 -0.41 0.24 16 33 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.05 0.97 8.14 -51.92 -0.42 0.54 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.15 1.52 7.45 -52.49 -0.39 1.13 16 LS Contribution 349.98 15.07 5.27 5.27 Total: -1.00 -31.55 349.98 -7.88 -39.43 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -6.62 Total: -5.15 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -1.83 Total: -16.93 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.60 Total: -32.54 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.31 Total: -5.43 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.55 -7.88 -39.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690520.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.717 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds