Wall clock time and date at job start Tue Mar 31 2020 05:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35908 * 116.99913 * 2 1 4 4 C 1.38787 * 120.44640 * 0.02562 * 3 2 1 5 5 N 1.31802 * 120.80585 * 179.97438 * 4 3 2 6 6 C 1.31833 * 121.83230 * 359.97438 * 5 4 3 7 7 C 1.38745 * 120.80458 * 0.02562 * 6 5 4 8 8 O 1.35916 * 120.44293 * 179.97438 * 7 6 5 9 9 C 1.42901 * 117.00202 * 185.67120 * 8 7 6 10 10 H 1.08997 * 109.46636 * 33.80934 * 9 8 7 11 11 C 1.50695 * 109.47088 * 273.81310 * 9 8 7 12 12 H 1.07993 * 120.00394 * 120.00182 * 11 9 8 13 13 C 1.37883 * 120.00060 * 299.99611 * 11 9 8 14 14 N 1.31515 * 119.99880 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00360 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46882 * 59.99838 * 15 13 11 17 17 H 1.48492 * 109.47378 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47088 * 300.00296 * 15 13 11 19 19 C 1.52999 * 109.46824 * 153.80987 * 9 8 7 20 20 N 1.46898 * 109.47260 * 294.49885 * 19 9 8 21 21 C 1.46899 * 109.46862 * 64.82570 * 20 19 9 22 22 C 1.46903 * 109.47081 * 184.82338 * 20 19 9 23 23 C 1.46899 * 109.47376 * 304.82518 * 20 19 9 24 24 C 1.39000 * 120.44120 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.47049 * 300.00151 * 1 2 3 26 26 H 1.09001 * 109.46964 * 60.00239 * 1 2 3 27 27 H 1.08994 * 109.47290 * 180.02562 * 1 2 3 28 28 H 1.07996 * 119.59391 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.59648 * 180.27967 * 6 5 4 30 30 H 0.96993 * 120.00208 * 179.97438 * 14 13 11 31 31 H 1.08997 * 109.47140 * 54.50575 * 19 9 8 32 32 H 1.09001 * 109.46546 * 174.49900 * 19 9 8 33 33 H 1.08997 * 109.47012 * 52.33715 * 21 20 19 34 34 H 1.08998 * 109.47006 * 172.33478 * 21 20 19 35 35 H 1.08998 * 109.47473 * 292.33413 * 21 20 19 36 36 H 1.08995 * 109.47078 * 59.99889 * 22 20 19 37 37 H 1.08997 * 109.47361 * 180.02562 * 22 20 19 38 38 H 1.09006 * 109.46780 * 300.00483 * 22 20 19 39 39 H 1.08996 * 109.47016 * 59.99432 * 23 20 19 40 40 H 1.08997 * 109.47096 * 180.02562 * 23 20 19 41 41 H 1.09004 * 109.46549 * 299.99991 * 23 20 19 42 42 H 1.08003 * 120.83662 * 0.04137 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2992 2.3808 0.0005 5 7 1.8902 3.5589 0.0010 6 6 3.2031 3.6782 0.0016 7 6 4.0186 2.5557 0.0011 8 8 5.3713 2.6872 0.0011 9 6 6.1397 1.4890 -0.1253 10 1 5.6096 0.7833 -0.7649 11 6 6.3437 0.8772 1.2367 12 1 5.9794 -0.1186 1.4415 13 6 6.9958 1.5887 2.2215 14 7 7.4392 2.8015 1.9723 15 14 7.2494 0.8301 3.9095 16 1 8.0482 -0.4149 3.7777 17 1 7.9708 1.7917 4.7811 18 1 5.9301 0.5103 4.5118 19 6 7.4991 1.8180 -0.7455 20 7 7.3072 2.2914 -2.1228 21 6 6.5665 3.5598 -2.1059 22 6 8.6164 2.4972 -2.7567 23 6 6.5470 1.2905 -2.8832 24 6 3.4335 1.2944 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.2207 2.3250 0.0014 29 1 3.6493 4.6617 0.0066 30 1 7.8976 3.3022 2.6651 31 1 7.9875 2.5959 -0.1586 32 1 8.1214 0.9232 -0.7522 33 1 7.0601 4.2598 -1.4319 34 1 6.5420 3.9797 -3.1115 35 1 5.5478 3.3812 -1.7619 36 1 9.1660 1.5561 -2.7692 37 1 8.4741 2.8489 -3.7785 38 1 9.1805 3.2399 -2.1924 39 1 5.5757 1.1377 -2.4129 40 1 6.4051 1.6415 -3.9053 41 1 7.0967 0.3493 -2.8957 42 1 4.0418 0.4020 0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226100821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:50 Heat of formation + Delta-G solvation = 72.865771 kcal Electronic energy + Delta-G solvation = -23742.238806 eV Core-core repulsion = 20421.387032 eV Total energy + Delta-G solvation = -3320.851773 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.165 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.42741 -41.46944 -39.62362 -38.22160 -34.82741 -32.48486 -31.96548 -30.51607 -30.31983 -30.16054 -28.29913 -27.92550 -25.26572 -24.58707 -23.41781 -22.34844 -19.73502 -19.09854 -18.69024 -18.39654 -17.96550 -17.67201 -17.34473 -17.04990 -16.71009 -16.13259 -15.62865 -15.28692 -15.01260 -14.87046 -14.47649 -14.33716 -14.16442 -14.03502 -13.98495 -13.89836 -13.79405 -13.51409 -13.17188 -12.87239 -12.70805 -12.51161 -12.35303 -12.18269 -11.85893 -11.29473 -11.01207 -10.38222 -10.18447 -9.68602 -8.88770 -7.85013 -6.07269 0.26328 0.48756 0.56031 2.06553 2.15622 2.20645 2.23889 2.28984 2.31234 2.32650 2.60444 2.95814 3.06270 3.10321 3.16335 3.36449 3.45598 3.58859 3.62917 3.69212 3.71925 3.76682 3.83158 3.95904 4.05707 4.08803 4.16779 4.19653 4.25936 4.27174 4.34742 4.50920 4.61785 4.65965 4.98471 5.17769 5.42803 5.58236 6.00541 6.16997 6.33705 6.65410 7.09952 7.25526 7.78309 9.17612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.312 6.312 3 C 0.116 3.884 4 C -0.037 4.037 5 N -0.414 5.414 6 C 0.019 3.981 7 C 0.143 3.857 8 O -0.294 6.294 9 C 0.189 3.811 10 H 0.049 0.951 11 C -0.567 4.567 12 H 0.079 0.921 13 C 0.093 3.907 14 N -0.860 5.860 15 Si 0.904 3.096 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.268 1.268 19 C -0.001 4.001 20 N -0.273 5.273 21 C -0.044 4.044 22 C -0.040 4.040 23 C -0.047 4.047 24 C -0.200 4.200 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.155 0.845 29 H 0.159 0.841 30 H 0.281 0.719 31 H 0.161 0.839 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.132 0.868 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.197 -0.203 -16.089 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.068 3.932 4 C -0.195 4.195 5 N -0.124 5.124 6 C -0.141 4.141 7 C 0.094 3.906 8 O -0.206 6.206 9 C 0.135 3.865 10 H 0.067 0.933 11 C -0.603 4.603 12 H 0.097 0.903 13 C -0.118 4.118 14 N -0.494 5.494 15 Si 0.730 3.270 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.192 1.192 19 C -0.119 4.119 20 N 0.069 4.931 21 C -0.185 4.185 22 C -0.182 4.182 23 C -0.189 4.189 24 C -0.227 4.227 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.121 0.879 28 H 0.172 0.828 29 H 0.177 0.823 30 H 0.091 0.909 31 H 0.178 0.822 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.118 0.882 35 H 0.150 0.850 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.135 0.865 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.018 0.656 -15.995 16.291 hybrid contribution 0.387 -1.205 1.184 1.733 sum 3.405 -0.548 -14.811 15.207 Atomic orbital electron populations 1.23134 0.77806 1.04398 1.01721 1.86080 1.21778 1.26335 1.88187 1.19920 0.92509 0.85505 0.95272 1.22676 1.00390 0.87184 1.09239 1.67496 1.10750 1.26265 1.07856 1.22078 0.87870 0.97645 1.06505 1.19817 0.85091 0.93038 0.92696 1.86333 1.12128 1.37001 1.85168 1.20412 0.85408 0.82638 0.98013 0.93316 1.21180 1.41249 1.03306 0.94557 0.90284 1.25034 0.92470 0.94174 1.00102 1.69587 1.34320 1.09616 1.35832 0.86366 0.79611 0.79504 0.81566 1.19266 1.20251 1.19240 1.24872 1.04480 1.06825 0.75759 1.46391 1.14223 1.15282 1.17239 1.24354 1.02953 0.84651 1.06547 1.24004 0.84243 1.07962 1.01995 1.24070 1.01260 0.94308 0.99290 1.21038 0.92340 0.98776 1.10508 0.92231 0.92349 0.87888 0.82833 0.82347 0.90889 0.82196 0.85801 0.85988 0.88151 0.85050 0.86829 0.87182 0.86444 0.86484 0.87068 0.86549 0.83181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.82 101.05 0.99 0.98 16 2 O -0.31 -0.94 10.51 -19.45 -0.20 -1.15 16 3 C 0.12 0.43 6.71 -39.10 -0.26 0.16 16 4 C -0.04 -0.13 10.22 -17.36 -0.18 -0.31 16 5 N -0.41 -1.97 10.35 -13.00 -0.13 -2.10 16 6 C 0.02 0.07 11.13 -17.36 -0.19 -0.13 16 7 C 0.14 0.42 6.04 -39.10 -0.24 0.18 16 8 O -0.29 -0.51 6.14 -19.47 -0.12 -0.62 16 9 C 0.19 0.08 1.35 -27.89 -0.04 0.05 16 10 H 0.05 -0.08 4.04 -51.93 -0.21 -0.29 16 11 C -0.57 -3.62 8.16 -34.44 -0.28 -3.90 16 12 H 0.08 0.61 7.81 -52.49 -0.41 0.20 16 13 C 0.09 0.78 5.24 -17.82 -0.09 0.69 16 14 N -0.86 -7.00 10.93 55.43 0.61 -6.39 16 15 Si 0.90 8.03 29.54 -169.99 -5.02 3.01 16 16 H -0.27 -2.40 7.11 56.52 0.40 -1.99 16 17 H -0.28 -2.73 7.11 56.52 0.40 -2.33 16 18 H -0.27 -2.79 7.11 56.52 0.40 -2.39 16 19 C 0.00 0.00 3.56 -3.83 -0.01 -0.01 16 20 N -0.27 2.73 0.05 -395.63 -0.02 2.71 16 21 C -0.04 0.39 7.21 60.06 0.43 0.83 16 22 C -0.04 0.51 8.00 60.07 0.48 0.99 16 23 C -0.05 0.53 7.53 60.06 0.45 0.98 16 24 C -0.20 -0.69 8.78 -39.00 -0.34 -1.04 16 25 H 0.06 -0.06 7.68 -51.93 -0.40 -0.46 16 26 H 0.06 -0.12 7.68 -51.93 -0.40 -0.52 16 27 H 0.10 -0.24 8.14 -51.93 -0.42 -0.67 16 28 H 0.15 0.21 6.31 -52.49 -0.33 -0.12 16 29 H 0.16 0.27 8.06 -52.49 -0.42 -0.15 16 30 H 0.28 2.52 8.31 -40.82 -0.34 2.18 16 31 H 0.16 -0.24 6.09 -51.93 -0.32 -0.55 16 32 H 0.12 -0.66 8.09 -51.93 -0.42 -1.08 16 33 H 0.12 -0.93 7.97 -51.93 -0.41 -1.35 16 34 H 0.10 -1.19 8.04 -51.93 -0.42 -1.60 16 35 H 0.13 -0.83 4.98 -51.93 -0.26 -1.09 16 36 H 0.11 -1.51 8.11 -51.93 -0.42 -1.93 16 37 H 0.11 -1.59 8.09 -51.93 -0.42 -2.01 16 38 H 0.12 -1.42 8.14 -51.93 -0.42 -1.84 16 39 H 0.12 -1.05 5.89 -51.93 -0.31 -1.36 16 40 H 0.11 -1.49 8.14 -51.93 -0.42 -1.91 16 41 H 0.12 -1.42 8.14 -51.93 -0.42 -1.84 16 42 H 0.15 0.48 5.87 -52.48 -0.31 0.17 16 LS Contribution 328.17 15.07 4.95 4.95 Total: 0.00 -17.57 328.17 -5.50 -23.07 By element: Atomic # 1 Polarization: -16.67 SS G_CDS: -6.28 Total: -22.95 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 0.72 Total: -0.53 kcal Atomic # 7 Polarization: -6.23 SS G_CDS: 0.45 Total: -5.78 kcal Atomic # 8 Polarization: -1.45 SS G_CDS: -0.32 Total: -1.77 kcal Atomic # 14 Polarization: 8.03 SS G_CDS: -5.02 Total: 3.01 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -17.57 -5.50 -23.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226100821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.938 kcal (2) G-P(sol) polarization free energy of solvation -17.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds