Wall clock time and date at job start Tue Mar 31 2020 05:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35908 * 116.99913 * 2 1 4 4 C 1.38787 * 120.44640 * 0.02562 * 3 2 1 5 5 N 1.31802 * 120.80585 * 179.97438 * 4 3 2 6 6 C 1.31833 * 121.83230 * 359.97438 * 5 4 3 7 7 C 1.38745 * 120.80458 * 0.02562 * 6 5 4 8 8 O 1.35916 * 120.44293 * 179.97438 * 7 6 5 9 9 C 1.42901 * 117.00202 * 185.67120 * 8 7 6 10 10 H 1.08997 * 109.46636 * 33.80934 * 9 8 7 11 11 C 1.50695 * 109.47088 * 273.81310 * 9 8 7 12 12 H 1.07993 * 120.00394 * 120.00182 * 11 9 8 13 13 C 1.37883 * 120.00060 * 299.99611 * 11 9 8 14 14 N 1.31515 * 119.99880 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00360 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46882 * 59.99838 * 15 13 11 17 17 H 1.48492 * 109.47378 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47088 * 300.00296 * 15 13 11 19 19 C 1.52999 * 109.46824 * 153.80987 * 9 8 7 20 20 N 1.46898 * 109.47260 * 294.49885 * 19 9 8 21 21 C 1.46899 * 109.46862 * 64.82570 * 20 19 9 22 22 C 1.46903 * 109.47081 * 184.82338 * 20 19 9 23 23 C 1.46899 * 109.47376 * 304.82518 * 20 19 9 24 24 C 1.39000 * 120.44120 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.47049 * 300.00151 * 1 2 3 26 26 H 1.09001 * 109.46964 * 60.00239 * 1 2 3 27 27 H 1.08994 * 109.47290 * 180.02562 * 1 2 3 28 28 H 1.07996 * 119.59391 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.59648 * 180.27967 * 6 5 4 30 30 H 0.96993 * 120.00208 * 179.97438 * 14 13 11 31 31 H 1.08997 * 109.47140 * 54.50575 * 19 9 8 32 32 H 1.09001 * 109.46546 * 174.49900 * 19 9 8 33 33 H 1.08997 * 109.47012 * 52.33715 * 21 20 19 34 34 H 1.08998 * 109.47006 * 172.33478 * 21 20 19 35 35 H 1.08998 * 109.47473 * 292.33413 * 21 20 19 36 36 H 1.08995 * 109.47078 * 59.99889 * 22 20 19 37 37 H 1.08997 * 109.47361 * 180.02562 * 22 20 19 38 38 H 1.09006 * 109.46780 * 300.00483 * 22 20 19 39 39 H 1.08996 * 109.47016 * 59.99432 * 23 20 19 40 40 H 1.08997 * 109.47096 * 180.02562 * 23 20 19 41 41 H 1.09004 * 109.46549 * 299.99991 * 23 20 19 42 42 H 1.08003 * 120.83662 * 0.04137 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2992 2.3808 0.0005 5 7 1.8902 3.5589 0.0010 6 6 3.2031 3.6782 0.0016 7 6 4.0186 2.5557 0.0011 8 8 5.3713 2.6872 0.0011 9 6 6.1397 1.4890 -0.1253 10 1 5.6096 0.7833 -0.7649 11 6 6.3437 0.8772 1.2367 12 1 5.9794 -0.1186 1.4415 13 6 6.9958 1.5887 2.2215 14 7 7.4392 2.8015 1.9723 15 14 7.2494 0.8301 3.9095 16 1 8.0482 -0.4149 3.7777 17 1 7.9708 1.7917 4.7811 18 1 5.9301 0.5103 4.5118 19 6 7.4991 1.8180 -0.7455 20 7 7.3072 2.2914 -2.1228 21 6 6.5665 3.5598 -2.1059 22 6 8.6164 2.4972 -2.7567 23 6 6.5470 1.2905 -2.8832 24 6 3.4335 1.2944 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.2207 2.3250 0.0014 29 1 3.6493 4.6617 0.0066 30 1 7.8976 3.3022 2.6651 31 1 7.9875 2.5959 -0.1586 32 1 8.1214 0.9232 -0.7522 33 1 7.0601 4.2598 -1.4319 34 1 6.5420 3.9797 -3.1115 35 1 5.5478 3.3812 -1.7619 36 1 9.1660 1.5561 -2.7692 37 1 8.4741 2.8489 -3.7785 38 1 9.1805 3.2399 -2.1924 39 1 5.5757 1.1377 -2.4129 40 1 6.4051 1.6415 -3.9053 41 1 7.0967 0.3493 -2.8957 42 1 4.0418 0.4020 0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226100821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:49 Heat of formation + Delta-G solvation = 66.999849 kcal Electronic energy + Delta-G solvation = -23742.493171 eV Core-core repulsion = 20421.387032 eV Total energy + Delta-G solvation = -3321.106139 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.165 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.84242 -41.60938 -39.72605 -38.38724 -35.24212 -32.69638 -32.03803 -30.44058 -29.55494 -29.43585 -28.31395 -27.92887 -25.35878 -24.38160 -23.52182 -22.29325 -19.93066 -18.96102 -18.29106 -18.09802 -17.79237 -17.62954 -17.30026 -17.00165 -16.83247 -16.59227 -15.76982 -15.35120 -14.70950 -14.56435 -14.35845 -14.15293 -13.98957 -13.61701 -13.33027 -13.28768 -13.20228 -13.16507 -13.14148 -12.98837 -12.87565 -12.76362 -12.64047 -12.47750 -12.40344 -11.46443 -11.38765 -10.91233 -10.56256 -9.90958 -9.11497 -8.44733 -6.61386 0.24895 0.30472 1.00304 1.30664 1.40740 1.47649 2.14018 2.24386 2.37217 2.80837 2.82754 3.05265 3.11532 3.23995 3.64759 3.76555 3.84429 3.97852 4.08953 4.11441 4.22748 4.27138 4.33454 4.34913 4.36661 4.40802 4.44442 4.48851 4.61672 4.68066 4.73867 4.74965 4.82122 4.94483 4.97544 5.08475 5.25923 5.39316 5.54026 5.71822 6.17942 6.32846 6.66301 7.00383 7.21597 8.53679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.328 6.328 3 C 0.111 3.889 4 C -0.045 4.045 5 N -0.435 5.435 6 C 0.011 3.989 7 C 0.145 3.855 8 O -0.289 6.289 9 C 0.184 3.816 10 H 0.072 0.928 11 C -0.569 4.569 12 H 0.059 0.941 13 C 0.075 3.925 14 N -0.862 5.862 15 Si 0.914 3.086 16 H -0.268 1.268 17 H -0.292 1.292 18 H -0.295 1.295 19 C 0.018 3.982 20 N -0.259 5.259 21 C -0.045 4.045 22 C -0.042 4.042 23 C -0.053 4.053 24 C -0.210 4.210 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.120 0.880 28 H 0.172 0.828 29 H 0.171 0.829 30 H 0.271 0.729 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.106 0.894 34 H 0.139 0.861 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.140 0.860 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.144 0.856 41 H 0.131 0.869 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.525 -0.228 -19.035 19.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.063 3.937 4 C -0.203 4.203 5 N -0.144 5.144 6 C -0.149 4.149 7 C 0.095 3.905 8 O -0.200 6.200 9 C 0.130 3.870 10 H 0.089 0.911 11 C -0.607 4.607 12 H 0.077 0.923 13 C -0.133 4.133 14 N -0.497 5.497 15 Si 0.743 3.257 16 H -0.193 1.193 17 H -0.218 1.218 18 H -0.221 1.221 19 C -0.103 4.103 20 N 0.083 4.917 21 C -0.186 4.186 22 C -0.183 4.183 23 C -0.194 4.194 24 C -0.237 4.237 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.138 0.862 28 H 0.189 0.811 29 H 0.188 0.812 30 H 0.080 0.920 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.125 0.875 34 H 0.157 0.843 35 H 0.123 0.877 36 H 0.144 0.856 37 H 0.158 0.842 38 H 0.130 0.870 39 H 0.112 0.888 40 H 0.162 0.838 41 H 0.150 0.850 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.354 0.622 -18.953 19.257 hybrid contribution 0.203 -1.272 2.064 2.433 sum 3.557 -0.650 -16.888 17.271 Atomic orbital electron populations 1.23409 0.75983 1.05889 1.02593 1.86061 1.23755 1.26098 1.88075 1.20008 0.92659 0.85903 0.95127 1.22953 1.01300 0.86881 1.09128 1.67503 1.11389 1.26934 1.08609 1.22275 0.87753 0.98336 1.06506 1.19837 0.85632 0.92776 0.92238 1.86375 1.11598 1.37028 1.85013 1.20519 0.87697 0.82887 0.95867 0.91075 1.21411 1.39384 1.02447 0.97410 0.92291 1.25092 0.93880 0.94665 0.99630 1.69654 1.35751 1.09429 1.34857 0.86298 0.77704 0.79110 0.82558 1.19317 1.21795 1.22114 1.24127 1.00595 1.06834 0.78749 1.46011 1.15934 1.15140 1.14632 1.24309 1.01119 0.84734 1.08439 1.24216 0.82329 1.08725 1.02995 1.24257 0.99994 0.94840 1.00308 1.21127 0.92625 0.98918 1.11043 0.91980 0.90833 0.86162 0.81110 0.81210 0.91952 0.84692 0.84299 0.87515 0.84299 0.87690 0.85585 0.84151 0.87040 0.88842 0.83787 0.85022 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.82 113.37 1.11 1.09 16 2 O -0.33 -2.12 10.51 -92.51 -0.97 -3.10 16 3 C 0.11 0.90 6.71 22.58 0.15 1.05 16 4 C -0.05 -0.35 10.22 84.83 0.87 0.52 16 5 N -0.43 -4.43 10.35 -195.03 -2.02 -6.45 16 6 C 0.01 0.09 11.13 84.81 0.94 1.03 16 7 C 0.15 1.00 6.04 22.58 0.14 1.14 16 8 O -0.29 -1.24 6.14 -92.60 -0.57 -1.81 16 9 C 0.18 0.26 1.35 29.85 0.04 0.30 16 10 H 0.07 -0.22 4.04 -2.39 -0.01 -0.23 16 11 C -0.57 -8.13 8.16 25.60 0.21 -7.92 16 12 H 0.06 1.03 7.81 -2.91 -0.02 1.01 16 13 C 0.08 1.42 5.24 84.66 0.44 1.86 16 14 N -0.86 -15.51 10.93 21.45 0.23 -15.28 16 15 Si 0.91 18.65 29.54 68.60 2.03 20.67 16 16 H -0.27 -5.33 7.11 99.48 0.71 -4.62 16 17 H -0.29 -6.55 7.11 99.48 0.71 -5.84 16 18 H -0.29 -7.17 7.11 99.48 0.71 -6.46 16 19 C 0.02 -0.16 3.56 86.30 0.31 0.15 16 20 N -0.26 5.62 0.05 ******* -0.07 5.55 16 21 C -0.04 0.85 7.21 127.69 0.92 1.77 16 22 C -0.04 1.18 8.00 127.69 1.02 2.21 16 23 C -0.05 1.30 7.53 127.69 0.96 2.26 16 24 C -0.21 -1.69 8.78 22.64 0.20 -1.49 16 25 H 0.06 -0.13 7.68 -2.39 -0.02 -0.15 16 26 H 0.07 -0.35 7.68 -2.39 -0.02 -0.37 16 27 H 0.12 -0.66 8.14 -2.39 -0.02 -0.67 16 28 H 0.17 0.48 6.31 -2.91 -0.02 0.46 16 29 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 30 H 0.27 5.41 8.31 -92.71 -0.77 4.64 16 31 H 0.14 -0.34 6.09 -2.39 -0.01 -0.35 16 32 H 0.14 -1.64 8.09 -2.39 -0.02 -1.66 16 33 H 0.11 -1.63 7.97 -2.39 -0.02 -1.65 16 34 H 0.14 -3.69 8.04 -2.39 -0.02 -3.71 16 35 H 0.10 -1.34 4.98 -2.39 -0.01 -1.36 16 36 H 0.13 -3.74 8.11 -2.39 -0.02 -3.76 16 37 H 0.14 -4.65 8.09 -2.39 -0.02 -4.67 16 38 H 0.11 -2.88 8.14 -2.38 -0.02 -2.90 16 39 H 0.09 -1.77 5.89 -2.39 -0.01 -1.78 16 40 H 0.14 -4.40 8.14 -2.39 -0.02 -4.42 16 41 H 0.13 -3.57 8.14 -2.38 -0.02 -3.59 16 42 H 0.15 1.13 5.87 -2.91 -0.02 1.12 16 Total: 0.00 -43.66 328.17 6.96 -36.71 By element: Atomic # 1 Polarization: -41.27 SS G_CDS: 1.01 Total: -40.27 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 7.32 Total: 3.97 kcal Atomic # 7 Polarization: -14.32 SS G_CDS: -1.85 Total: -16.17 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: -1.54 Total: -4.91 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: 2.03 Total: 20.67 kcal Total: -43.66 6.96 -36.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226100821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.708 kcal (2) G-P(sol) polarization free energy of solvation -43.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds