Wall clock time and date at job start Tue Mar 31 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35991 * 117.00296 * 2 1 4 4 C 1.38804 * 120.49190 * 0.25742 * 3 2 1 5 5 C 1.38778 * 118.43648 * 180.21477 * 4 3 2 6 6 C 1.38051 * 119.33275 * 359.53236 * 5 4 3 7 7 N 1.31990 * 120.93974 * 0.22715 * 6 5 4 8 8 C 1.32166 * 121.70014 * 0.02562 * 7 6 5 9 9 O 1.35765 * 119.71410 * 179.97438 * 8 7 6 10 10 C 1.42898 * 116.99964 * 354.80554 * 9 8 7 11 11 H 1.09006 * 109.47149 * 332.31065 * 10 9 8 12 12 C 1.50700 * 109.46903 * 212.31430 * 10 9 8 13 13 H 1.08001 * 120.00234 * 354.09867 * 12 10 9 14 14 C 1.37881 * 119.99928 * 174.10323 * 12 10 9 15 15 N 1.31509 * 120.00231 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 119.99976 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47456 * 89.99665 * 16 14 12 18 18 H 1.48503 * 109.47391 * 209.99543 * 16 14 12 19 19 H 1.48500 * 109.47297 * 329.99483 * 16 14 12 20 20 C 1.52995 * 109.47583 * 92.31358 * 10 9 8 21 21 N 1.46895 * 109.47419 * 58.88345 * 20 10 9 22 22 C 1.46899 * 109.47279 * 64.01930 * 21 20 10 23 23 C 1.46903 * 109.47316 * 184.02353 * 21 20 10 24 24 C 1.46908 * 109.46857 * 304.01983 * 21 20 10 25 25 H 1.08998 * 109.46742 * 299.99851 * 1 2 3 26 26 H 1.08998 * 109.47050 * 59.99754 * 1 2 3 27 27 H 1.08999 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.77866 * 0.02562 * 4 3 2 29 29 H 1.08001 * 120.32724 * 179.80139 * 5 4 3 30 30 H 1.08004 * 119.52626 * 180.24785 * 6 5 4 31 31 H 0.97006 * 120.00509 * 180.02562 * 15 14 12 32 32 H 1.08998 * 109.47243 * 178.88249 * 20 10 9 33 33 H 1.09006 * 109.47173 * 298.87794 * 20 10 9 34 34 H 1.08993 * 109.46688 * 40.58649 * 22 21 20 35 35 H 1.08999 * 109.46897 * 160.58903 * 22 21 20 36 36 H 1.08998 * 109.46770 * 280.58678 * 22 21 20 37 37 H 1.09003 * 109.47263 * 60.00108 * 23 21 20 38 38 H 1.08999 * 109.46774 * 179.97438 * 23 21 20 39 39 H 1.09001 * 109.47004 * 299.99570 * 23 21 20 40 40 H 1.09001 * 109.46606 * 81.28840 * 24 21 20 41 41 H 1.08997 * 109.47217 * 201.28789 * 24 21 20 42 42 H 1.09005 * 109.47119 * 321.28914 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.3006 2.3822 0.0054 5 6 1.9746 3.5953 0.0006 6 6 3.3551 3.6020 0.0005 7 7 4.0391 2.4732 0.0004 8 6 3.4374 1.2965 -0.0001 9 8 4.1808 0.1604 -0.0006 10 6 5.5970 0.3120 -0.1159 11 1 5.8212 1.2309 -0.6578 12 6 6.1688 -0.8646 -0.8641 13 1 5.5324 -1.6947 -1.1328 14 6 7.5046 -0.8813 -1.2054 15 7 8.2796 0.1296 -0.8786 16 14 8.2132 -2.3394 -2.1334 17 1 8.0983 -2.0997 -3.5945 18 1 9.6432 -2.5095 -1.7708 19 1 7.4617 -3.5684 -1.7729 20 6 6.2182 0.3791 1.2806 21 7 5.8937 -0.8478 2.0204 22 6 6.5127 -2.0006 1.3526 23 6 6.4076 -0.7427 3.3926 24 6 4.4360 -1.0271 2.0559 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 0.2211 2.3497 0.0100 29 1 1.4246 4.5248 0.0013 30 1 3.8828 4.5443 0.0008 31 1 9.2193 0.1180 -1.1191 32 1 7.3004 0.4747 1.1927 33 1 5.8195 1.2416 1.8146 34 1 7.5144 -1.7315 1.0177 35 1 6.5749 -2.8348 2.0513 36 1 5.9079 -2.2905 0.4934 37 1 5.9482 0.1126 3.8881 38 1 6.1663 -1.6529 3.9416 39 1 7.4891 -0.6097 3.3663 40 1 4.1020 -1.4729 1.1189 41 1 4.1706 -1.6827 2.8852 42 1 3.9540 -0.0586 2.1897 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226138883.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:45 Heat of formation + Delta-G solvation = 78.551372 kcal Electronic energy + Delta-G solvation = -24125.202801 eV Core-core repulsion = 20804.597574 eV Total energy + Delta-G solvation = -3320.605227 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.165 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.17743 -41.64990 -39.33869 -38.41211 -35.10139 -32.85095 -31.88598 -30.56589 -30.09369 -29.83602 -28.41723 -27.74731 -24.92287 -24.15148 -23.93187 -22.53928 -19.82556 -18.88315 -18.72578 -18.15210 -18.09783 -17.89261 -17.05941 -16.91652 -16.30619 -15.97539 -15.79325 -15.41772 -14.91239 -14.68692 -14.63323 -14.42036 -14.07245 -13.85345 -13.78421 -13.49150 -13.38178 -13.33150 -12.93888 -12.81320 -12.64079 -12.45113 -12.36663 -12.18615 -11.84723 -11.62528 -10.98064 -10.61342 -10.47022 -10.13175 -8.89090 -7.93370 -6.02490 0.23942 0.27172 0.70957 1.96177 2.03302 2.11024 2.15789 2.36172 2.66208 2.70726 2.73401 2.84306 2.89351 3.38539 3.44534 3.48658 3.56107 3.74667 3.79186 3.87623 3.92402 3.99146 4.05298 4.12822 4.15002 4.17355 4.21691 4.27914 4.38670 4.49844 4.51762 4.54453 4.91671 4.93592 4.99076 5.12549 5.32988 5.51013 5.95079 6.12027 6.14532 6.64774 6.92781 7.10813 7.64885 9.12202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.302 6.302 3 C 0.054 3.946 4 C -0.137 4.137 5 C -0.174 4.174 6 C 0.101 3.899 7 N -0.500 5.500 8 C 0.301 3.699 9 O -0.300 6.300 10 C 0.200 3.800 11 H 0.095 0.905 12 C -0.557 4.557 13 H 0.084 0.916 14 C 0.072 3.928 15 N -0.871 5.871 16 Si 0.902 3.098 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.264 1.264 20 C -0.014 4.014 21 N -0.252 5.252 22 C -0.035 4.035 23 C -0.041 4.041 24 C -0.027 4.027 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.103 0.897 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.161 0.839 31 H 0.284 0.716 32 H 0.147 0.853 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.151 0.849 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.137 0.863 41 H 0.094 0.906 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.175 -0.815 11.763 13.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.214 6.214 3 C 0.006 3.994 4 C -0.163 4.163 5 C -0.195 4.195 6 C -0.054 4.054 7 N -0.224 5.224 8 C 0.119 3.881 9 O -0.208 6.208 10 C 0.144 3.856 11 H 0.112 0.888 12 C -0.593 4.593 13 H 0.102 0.898 14 C -0.136 4.136 15 N -0.505 5.505 16 Si 0.726 3.274 17 H -0.192 1.192 18 H -0.201 1.201 19 H -0.189 1.189 20 C -0.135 4.135 21 N 0.090 4.910 22 C -0.175 4.175 23 C -0.184 4.184 24 C -0.168 4.168 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.121 0.879 28 H 0.161 0.839 29 H 0.156 0.844 30 H 0.178 0.822 31 H 0.094 0.906 32 H 0.165 0.835 33 H 0.110 0.890 34 H 0.136 0.864 35 H 0.098 0.902 36 H 0.169 0.831 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.155 0.845 41 H 0.113 0.887 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.042 -1.188 11.759 13.273 hybrid contribution -0.557 -0.041 -0.616 0.831 sum -6.599 -1.229 11.143 13.009 Atomic orbital electron populations 1.23116 0.78291 1.04389 1.01283 1.86180 1.21135 1.25176 1.88917 1.19048 0.90188 0.85997 1.04212 1.21553 1.00737 0.91434 1.02586 1.21847 0.95515 0.98374 1.03725 1.22387 0.91346 0.95407 0.96241 1.67496 1.39930 0.97580 1.17439 1.19306 0.86207 0.86664 0.95893 1.86521 1.22466 1.25649 1.86135 1.20431 0.72488 1.02974 0.89702 0.88766 1.20971 0.94537 1.04023 1.39797 0.89810 1.24975 0.96506 0.97497 0.94579 1.69752 1.07893 1.29527 1.43358 0.86361 0.78763 0.80684 0.81544 1.19168 1.20089 1.18866 1.24699 1.08712 0.82714 0.97364 1.45801 1.14552 1.17184 1.13422 1.24756 1.05303 0.85972 1.01488 1.24012 1.04881 1.07222 0.82249 1.24191 0.77776 1.06678 1.08201 0.92740 0.92547 0.87850 0.83918 0.84356 0.82152 0.90576 0.83488 0.88997 0.86441 0.90183 0.83117 0.87536 0.87243 0.86846 0.84518 0.88705 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 9.83 101.05 0.99 0.93 16 2 O -0.30 -0.25 10.29 -34.10 -0.35 -0.61 16 3 C 0.05 0.08 6.72 -38.96 -0.26 -0.18 16 4 C -0.14 0.04 9.14 -39.17 -0.36 -0.32 16 5 C -0.17 0.10 10.10 -39.45 -0.40 -0.30 16 6 C 0.10 0.07 11.17 -17.55 -0.20 -0.12 16 7 N -0.50 -1.42 8.67 -13.21 -0.11 -1.54 16 8 C 0.30 0.79 6.89 -16.99 -0.12 0.67 16 9 O -0.30 -0.68 5.48 -33.40 -0.18 -0.86 16 10 C 0.20 0.64 1.98 -27.89 -0.06 0.59 16 11 H 0.09 0.69 7.00 -51.93 -0.36 0.33 16 12 C -0.56 -2.92 5.30 -34.44 -0.18 -3.10 16 13 H 0.08 0.47 7.04 -52.49 -0.37 0.10 16 14 C 0.07 0.49 3.62 -17.82 -0.06 0.43 16 15 N -0.87 -7.13 11.76 55.43 0.65 -6.47 16 16 Si 0.90 6.07 29.54 -169.99 -5.02 1.05 16 17 H -0.27 -2.42 7.11 56.52 0.40 -2.02 16 18 H -0.28 -2.06 7.11 56.52 0.40 -1.66 16 19 H -0.26 -1.55 7.11 56.52 0.40 -1.15 16 20 C -0.01 0.02 4.05 -3.83 -0.02 0.00 16 21 N -0.25 1.45 0.05 -395.62 -0.02 1.43 16 22 C -0.03 0.15 6.90 60.06 0.41 0.56 16 23 C -0.04 0.38 7.85 60.07 0.47 0.85 16 24 C -0.03 0.16 6.99 60.07 0.42 0.58 16 25 H 0.05 -0.22 7.69 -51.93 -0.40 -0.62 16 26 H 0.06 -0.17 7.71 -51.93 -0.40 -0.57 16 27 H 0.10 -0.42 8.14 -51.93 -0.42 -0.84 16 28 H 0.14 -0.38 6.44 -52.49 -0.34 -0.71 16 29 H 0.14 -0.40 8.06 -52.49 -0.42 -0.83 16 30 H 0.16 -0.24 8.06 -52.48 -0.42 -0.66 16 31 H 0.28 2.44 8.31 -40.82 -0.34 2.10 16 32 H 0.15 0.08 6.29 -51.93 -0.33 -0.25 16 33 H 0.09 -0.21 8.05 -51.93 -0.42 -0.63 16 34 H 0.12 -0.21 6.03 -51.93 -0.31 -0.52 16 35 H 0.08 -0.60 7.80 -51.93 -0.41 -1.00 16 36 H 0.15 -0.31 4.50 -51.93 -0.23 -0.55 16 37 H 0.11 -1.06 8.12 -51.93 -0.42 -1.48 16 38 H 0.11 -1.22 7.86 -51.93 -0.41 -1.63 16 39 H 0.11 -1.03 8.14 -51.93 -0.42 -1.46 16 40 H 0.14 -0.49 5.77 -51.93 -0.30 -0.79 16 41 H 0.09 -0.85 7.77 -51.93 -0.40 -1.26 16 42 H 0.10 -0.49 6.64 -51.93 -0.34 -0.83 16 LS Contribution 323.08 15.07 4.87 4.87 Total: 0.00 -12.68 323.08 -5.79 -18.47 By element: Atomic # 1 Polarization: -10.66 SS G_CDS: -6.27 Total: -16.93 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 0.65 Total: 0.59 kcal Atomic # 7 Polarization: -7.10 SS G_CDS: 0.52 Total: -6.58 kcal Atomic # 8 Polarization: -0.93 SS G_CDS: -0.53 Total: -1.46 kcal Atomic # 14 Polarization: 6.07 SS G_CDS: -5.02 Total: 1.05 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -12.68 -5.79 -18.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226138883.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.018 kcal (2) G-P(sol) polarization free energy of solvation -12.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds