Wall clock time and date at job start Tue Mar 31 2020 05:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35750 * 117.00227 * 2 1 4 4 C 1.39435 * 120.81053 * 0.02591 * 3 2 1 5 5 C 1.37826 * 119.21440 * 179.97438 * 4 3 2 6 6 N 1.32050 * 120.89534 * 359.74526 * 5 4 3 7 7 C 1.32346 * 121.77813 * 0.52017 * 6 5 4 8 8 O 1.35679 * 119.65166 * 179.75571 * 7 6 5 9 9 C 1.42902 * 117.00335 * 359.72684 * 8 7 6 10 10 H 1.09002 * 109.46835 * 30.00020 * 9 8 7 11 11 C 1.50702 * 109.47223 * 270.00374 * 9 8 7 12 12 H 1.08005 * 119.99955 * 125.70531 * 11 9 8 13 13 C 1.37874 * 119.99889 * 305.70498 * 11 9 8 14 14 N 1.31513 * 120.00086 * 6.29998 * 13 11 9 15 15 Si 1.86803 * 119.99805 * 186.30312 * 13 11 9 16 16 H 1.48497 * 109.47205 * 269.99695 * 15 13 11 17 17 H 1.48500 * 109.47135 * 29.99945 * 15 13 11 18 18 H 1.48501 * 109.46955 * 149.99758 * 15 13 11 19 19 C 1.52999 * 109.47465 * 149.99976 * 9 8 7 20 20 N 1.46902 * 109.46829 * 291.55656 * 19 9 8 21 21 C 1.46903 * 109.47056 * 62.02288 * 20 19 9 22 22 C 1.46903 * 109.46648 * 182.01756 * 20 19 9 23 23 C 1.46892 * 109.47421 * 302.01688 * 20 19 9 24 24 C 1.38678 * 120.69278 * 359.48283 * 7 6 5 25 25 H 1.08997 * 109.46727 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46654 * 299.99743 * 1 2 3 27 27 H 1.08994 * 109.47307 * 59.99605 * 1 2 3 28 28 H 1.07997 * 120.39339 * 359.95062 * 4 3 2 29 29 H 1.08000 * 119.55262 * 180.02562 * 5 4 3 30 30 H 0.97001 * 120.00303 * 354.45172 * 14 13 11 31 31 H 1.09003 * 109.46949 * 51.55257 * 19 9 8 32 32 H 1.08994 * 109.47176 * 171.55696 * 19 9 8 33 33 H 1.08994 * 109.47306 * 47.36924 * 21 20 19 34 34 H 1.09004 * 109.47046 * 167.36900 * 21 20 19 35 35 H 1.08996 * 109.46859 * 287.36626 * 21 20 19 36 36 H 1.08995 * 109.46954 * 60.00211 * 22 20 19 37 37 H 1.09008 * 109.46884 * 180.02562 * 22 20 19 38 38 H 1.08994 * 109.47490 * 299.99840 * 22 20 19 39 39 H 1.09002 * 109.46841 * 60.00129 * 23 20 19 40 40 H 1.08998 * 109.47203 * 180.02562 * 23 20 19 41 41 H 1.08995 * 109.47284 * 300.00464 * 23 20 19 42 42 H 1.07997 * 120.47810 * 180.22672 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2095 0.0000 4 6 1.3026 2.3896 0.0005 5 6 1.9623 3.5997 0.0011 6 7 3.2818 3.6526 0.0061 7 6 4.0233 2.5564 0.0006 8 8 5.3760 2.6611 0.0011 9 6 5.9247 3.9806 0.0016 10 1 5.2422 4.6576 0.5154 11 6 6.1180 4.4448 -1.4190 12 1 5.6835 5.3780 -1.7461 13 6 6.8495 3.6783 -2.3012 14 7 7.2734 2.4864 -1.9418 15 14 7.2386 4.3329 -4.0070 16 1 6.1585 3.9386 -4.9468 17 1 7.3362 5.8139 -3.9585 18 1 8.5303 3.7667 -4.4717 19 6 7.2738 3.9718 0.7233 20 7 7.0618 3.7165 2.1544 21 6 6.4494 2.3929 2.3302 22 6 8.3523 3.7560 2.8551 23 6 6.1719 4.7454 2.7088 24 6 3.4322 1.3019 0.0000 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 0.2232 2.3558 0.0002 29 1 1.3924 4.5171 0.0019 30 1 7.1418 2.1790 -1.0313 31 1 7.9049 3.1882 0.3041 32 1 7.7608 4.9383 0.5949 33 1 6.9890 1.6602 1.7303 34 1 6.4965 2.1075 3.3812 35 1 5.4082 2.4288 2.0099 36 1 8.8067 4.7380 2.7246 37 1 8.1951 3.5661 3.9170 38 1 9.0126 2.9925 2.4438 39 1 5.2144 4.7161 2.1888 40 1 6.0150 4.5562 3.7707 41 1 6.6263 5.7275 2.5783 42 1 4.0406 0.4097 -0.0008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226822688.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:48 Heat of formation + Delta-G solvation = 74.063396 kcal Electronic energy + Delta-G solvation = -23707.086749 eV Core-core repulsion = 20386.286909 eV Total energy + Delta-G solvation = -3320.799841 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.165 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.54543 -41.50597 -39.81929 -38.11027 -34.89049 -32.49619 -31.77269 -30.88970 -30.46146 -30.37271 -28.42429 -27.53573 -25.12517 -24.46818 -23.72734 -22.32393 -19.86563 -19.56250 -18.74982 -18.47821 -18.21730 -17.76056 -17.30650 -16.84233 -16.39841 -16.05665 -15.80743 -15.12226 -15.07487 -14.91834 -14.59687 -14.48341 -14.34280 -14.21999 -14.14663 -13.97171 -13.88171 -13.61852 -13.38801 -13.23752 -12.61617 -12.20896 -12.11180 -11.97285 -11.79461 -11.24823 -10.39930 -10.32201 -9.96814 -9.76621 -9.19937 -7.92627 -5.88593 0.13876 0.38457 0.56748 1.86471 2.13974 2.17811 2.19442 2.35111 2.42256 2.52399 2.68803 3.00339 3.05206 3.09280 3.19710 3.29859 3.40655 3.50203 3.51665 3.58553 3.63615 3.70561 3.73956 3.81583 3.94335 4.00721 4.07212 4.12348 4.16989 4.19992 4.36963 4.44967 4.53553 4.87874 4.93187 5.03823 5.24228 5.38650 6.08460 6.27872 6.59731 6.86024 7.19102 7.24089 7.89803 9.40530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.199 3.801 4 C -0.306 4.306 5 C 0.175 3.825 6 N -0.552 5.552 7 C 0.374 3.626 8 O -0.313 6.313 9 C 0.177 3.823 10 H 0.077 0.923 11 C -0.618 4.618 12 H 0.074 0.926 13 C 0.045 3.955 14 N -0.864 5.864 15 Si 1.062 2.938 16 H -0.280 1.280 17 H -0.280 1.280 18 H -0.277 1.277 19 C -0.007 4.007 20 N -0.273 5.273 21 C -0.040 4.040 22 C -0.043 4.043 23 C -0.047 4.047 24 C -0.242 4.242 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.137 0.863 29 H 0.158 0.842 30 H 0.275 0.725 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.473 2.227 17.138 17.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.146 3.854 4 C -0.328 4.328 5 C 0.019 3.981 6 N -0.279 5.279 7 C 0.196 3.804 8 O -0.221 6.221 9 C 0.123 3.877 10 H 0.095 0.905 11 C -0.654 4.654 12 H 0.092 0.908 13 C -0.167 4.167 14 N -0.498 5.498 15 Si 0.888 3.112 16 H -0.206 1.206 17 H -0.206 1.206 18 H -0.202 1.202 19 C -0.126 4.126 20 N 0.068 4.932 21 C -0.181 4.181 22 C -0.184 4.184 23 C -0.189 4.189 24 C -0.263 4.263 25 H 0.122 0.878 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.155 0.845 29 H 0.176 0.824 30 H 0.089 0.911 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.139 0.861 34 H 0.124 0.876 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.971 2.175 15.734 15.913 hybrid contribution -1.503 -0.214 1.163 1.913 sum -0.533 1.961 16.897 17.019 Atomic orbital electron populations 1.23161 0.77403 1.04489 1.01808 1.86062 1.22128 1.26334 1.87575 1.18920 0.91534 0.84545 0.90425 1.22014 1.01476 0.93085 1.16238 1.22195 0.88893 0.97016 0.90011 1.67428 1.07616 1.31007 1.21837 1.19215 0.84814 0.88207 0.88133 1.86369 1.14826 1.35231 1.85718 1.20514 0.87446 0.80801 0.98922 0.90546 1.22064 1.38414 1.11257 0.93706 0.90809 1.26068 0.92058 0.93120 1.05447 1.70958 1.42885 1.15475 1.20478 0.83553 0.77972 0.75722 0.73956 1.20553 1.20590 1.20158 1.25127 1.05860 1.08120 0.73516 1.46450 1.14411 1.15064 1.17260 1.24241 1.04746 0.82825 1.06271 1.24058 0.84869 1.08771 1.00729 1.24111 0.98449 0.93222 1.03083 1.20179 0.91973 0.97860 1.16324 0.87759 0.92283 0.92119 0.84493 0.82443 0.91131 0.85136 0.84867 0.86058 0.87617 0.86067 0.86578 0.86969 0.86488 0.85914 0.87028 0.86378 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 9.84 101.05 0.99 0.96 16 2 O -0.31 -0.84 10.51 -18.96 -0.20 -1.04 16 3 C 0.20 0.64 6.73 -38.86 -0.26 0.38 16 4 C -0.31 -0.49 9.11 -39.29 -0.36 -0.84 16 5 C 0.18 0.34 11.17 -17.61 -0.20 0.14 16 6 N -0.55 -2.10 8.64 -13.40 -0.12 -2.21 16 7 C 0.37 1.53 6.53 -17.17 -0.11 1.42 16 8 O -0.31 -1.03 5.06 -18.74 -0.09 -1.12 16 9 C 0.18 0.37 1.61 -27.88 -0.05 0.32 16 10 H 0.08 0.06 4.64 -51.93 -0.24 -0.18 16 11 C -0.62 -5.23 8.86 -34.44 -0.31 -5.53 16 12 H 0.07 0.76 7.82 -52.48 -0.41 0.35 16 13 C 0.04 0.48 5.24 -17.82 -0.09 0.38 16 14 N -0.86 -9.87 13.06 55.43 0.72 -9.15 16 15 Si 1.06 10.31 29.91 -169.99 -5.08 5.23 16 16 H -0.28 -3.04 7.11 56.52 0.40 -2.64 16 17 H -0.28 -2.50 7.11 56.52 0.40 -2.10 16 18 H -0.28 -2.87 7.11 56.52 0.40 -2.47 16 19 C -0.01 0.03 3.47 -3.82 -0.01 0.01 16 20 N -0.27 2.62 0.05 -395.63 -0.02 2.60 16 21 C -0.04 0.34 7.01 60.07 0.42 0.76 16 22 C -0.04 0.53 7.99 60.07 0.48 1.01 16 23 C -0.05 0.50 7.60 60.06 0.46 0.95 16 24 C -0.24 -0.96 10.00 -39.14 -0.39 -1.36 16 25 H 0.10 -0.29 8.14 -51.93 -0.42 -0.71 16 26 H 0.06 -0.15 7.71 -51.93 -0.40 -0.55 16 27 H 0.06 -0.10 7.71 -51.93 -0.40 -0.50 16 28 H 0.14 -0.11 6.46 -52.49 -0.34 -0.45 16 29 H 0.16 -0.13 8.06 -52.49 -0.42 -0.56 16 30 H 0.27 2.43 4.64 -40.82 -0.19 2.24 16 31 H 0.13 -0.18 6.12 -51.93 -0.32 -0.50 16 32 H 0.13 -0.63 8.11 -51.93 -0.42 -1.05 16 33 H 0.12 -0.88 7.87 -51.93 -0.41 -1.28 16 34 H 0.11 -1.24 7.94 -51.93 -0.41 -1.65 16 35 H 0.12 -0.70 5.18 -51.93 -0.27 -0.97 16 36 H 0.12 -1.53 8.14 -51.93 -0.42 -1.95 16 37 H 0.11 -1.62 8.05 -51.92 -0.42 -2.03 16 38 H 0.12 -1.41 8.14 -51.93 -0.42 -1.83 16 39 H 0.12 -0.96 5.84 -51.93 -0.30 -1.26 16 40 H 0.11 -1.45 8.14 -51.93 -0.42 -1.88 16 41 H 0.12 -1.37 8.14 -51.93 -0.42 -1.79 16 42 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 LS Contribution 328.62 15.07 4.95 4.95 Total: 0.00 -20.25 328.62 -5.55 -25.80 By element: Atomic # 1 Polarization: -17.39 SS G_CDS: -6.29 Total: -23.67 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 0.58 Total: -1.38 kcal Atomic # 7 Polarization: -9.35 SS G_CDS: 0.59 Total: -8.76 kcal Atomic # 8 Polarization: -1.87 SS G_CDS: -0.29 Total: -2.16 kcal Atomic # 14 Polarization: 10.31 SS G_CDS: -5.08 Total: 5.23 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -20.25 -5.55 -25.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226822688.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.863 kcal (2) G-P(sol) polarization free energy of solvation -20.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds