Wall clock time and date at job start Tue Mar 31 2020 05:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37865 * 119.55751 * 2 1 4 4 C 1.39395 * 119.21746 * 179.97438 * 3 2 1 5 5 O 1.35749 * 120.81786 * 179.97438 * 4 3 2 6 6 C 1.39032 * 118.37201 * 359.73494 * 4 3 2 7 7 C 1.38645 * 119.04123 * 0.51994 * 6 4 3 8 8 O 1.35687 * 119.65204 * 179.73539 * 7 6 4 9 9 C 1.42898 * 116.99933 * 174.82377 * 8 7 6 10 10 H 1.08996 * 109.46979 * 328.81534 * 9 8 7 11 11 C 1.50699 * 109.47141 * 208.81267 * 9 8 7 12 12 H 1.07998 * 120.00305 * 354.68576 * 11 9 8 13 13 C 1.37876 * 120.00159 * 174.68057 * 11 9 8 14 14 N 1.31514 * 119.99847 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00379 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47252 * 89.99981 * 15 13 11 17 17 H 1.48502 * 109.47100 * 209.99944 * 15 13 11 18 18 H 1.48497 * 109.46816 * 330.00029 * 15 13 11 19 19 C 1.53002 * 109.47102 * 88.81629 * 9 8 7 20 20 N 1.46901 * 109.47228 * 51.83843 * 19 9 8 21 21 C 1.46899 * 109.46938 * 54.40398 * 20 19 9 22 22 C 1.46899 * 109.47259 * 174.40214 * 20 19 9 23 23 C 1.46898 * 109.47261 * 294.40740 * 20 19 9 24 24 N 1.32028 * 119.55255 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47272 * 270.02710 * 1 2 3 26 26 H 1.09000 * 109.47248 * 30.02546 * 1 2 3 27 27 H 1.08994 * 109.47385 * 150.02590 * 1 2 3 28 28 H 1.07998 * 120.39079 * 359.97438 * 3 2 1 29 29 H 0.96704 * 113.99156 * 90.00148 * 5 4 3 30 30 H 1.07995 * 120.48321 * 180.28294 * 6 4 3 31 31 H 0.97000 * 120.00274 * 180.02562 * 14 13 11 32 32 H 1.08998 * 109.47213 * 171.83961 * 19 9 8 33 33 H 1.08998 * 109.47026 * 291.84362 * 19 9 8 34 34 H 1.09005 * 109.47437 * 42.53554 * 21 20 19 35 35 H 1.08999 * 109.47760 * 162.53413 * 21 20 19 36 36 H 1.09001 * 109.47624 * 282.53597 * 21 20 19 37 37 H 1.09001 * 109.46609 * 60.00303 * 22 20 19 38 38 H 1.08999 * 109.47205 * 180.02562 * 22 20 19 39 39 H 1.08998 * 109.47207 * 300.00282 * 22 20 19 40 40 H 1.08999 * 109.47383 * 78.55584 * 23 20 19 41 41 H 1.09000 * 109.47274 * 198.55469 * 23 20 19 42 42 H 1.08996 * 109.47284 * 318.55320 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.1992 0.0000 4 6 3.5810 1.1910 0.0005 5 8 4.2833 2.3526 0.0000 6 6 4.2344 -0.0362 0.0067 7 6 3.4808 -1.2000 0.0011 8 8 4.1057 -2.4044 0.0016 9 6 3.2784 -3.5644 0.1105 10 1 2.3946 -3.3261 0.7021 11 6 4.0501 -4.6704 0.7832 12 1 5.0952 -4.5338 1.0187 13 6 3.4218 -5.8566 1.0981 14 7 2.1493 -6.0231 0.8110 15 14 4.3781 -7.2272 1.9326 16 1 4.2811 -7.0723 3.4063 17 1 3.8103 -8.5404 1.5345 18 1 5.8030 -7.1585 1.5204 19 6 2.8499 -4.0183 -1.2864 20 7 4.0357 -4.1516 -2.1432 21 6 5.0082 -5.0437 -1.4980 22 6 3.6411 -4.7144 -3.4414 23 6 4.6438 -2.8300 -2.3469 24 7 2.1582 -1.1485 0.0005 25 1 -0.3634 0.0005 1.0277 26 1 -0.3634 0.8897 -0.5142 27 1 -0.3634 -0.8902 -0.5134 28 1 1.6462 2.1340 -0.0004 29 1 4.4865 2.6897 0.8834 30 1 5.3133 -0.0824 0.0119 31 1 1.7071 -6.8575 1.0328 32 1 2.3424 -4.9803 -1.2162 33 1 2.1724 -3.2805 -1.7162 34 1 4.4872 -5.8999 -1.0693 35 1 5.7297 -5.3906 -2.2376 36 1 5.5293 -4.5028 -0.7080 37 1 2.9196 -4.0524 -3.9202 38 1 4.5211 -4.8138 -4.0770 39 1 3.1900 -5.6951 -3.2903 40 1 5.2235 -2.5569 -1.4652 41 1 5.2994 -2.8618 -3.2171 42 1 3.8598 -2.0905 -2.5096 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228121409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:45 Heat of formation + Delta-G solvation = 65.054411 kcal Electronic energy + Delta-G solvation = -23878.627736 eV Core-core repulsion = 20557.437236 eV Total energy + Delta-G solvation = -3321.190499 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.165 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.29575 -41.58453 -39.34228 -38.06097 -35.22248 -33.26732 -32.00307 -31.36537 -30.15556 -30.02332 -28.57019 -27.70198 -24.84250 -24.25006 -23.36427 -22.67567 -19.78523 -19.00470 -18.59376 -18.35475 -18.17076 -17.44273 -17.03428 -16.85472 -16.45355 -16.20840 -15.71626 -14.99164 -14.87257 -14.85435 -14.56777 -14.36972 -13.98135 -13.88930 -13.77648 -13.61529 -13.53101 -13.33050 -13.15666 -12.95494 -12.89937 -12.50258 -12.20055 -11.91154 -11.74884 -11.61800 -10.98803 -10.66806 -10.43567 -10.18512 -9.41255 -7.95878 -6.06666 0.05222 0.18560 0.60679 1.94954 1.97795 2.10085 2.18219 2.54867 2.61704 2.62372 2.71074 2.84426 3.04091 3.25234 3.33876 3.36481 3.47375 3.67091 3.84097 3.87600 3.95545 4.00876 4.07391 4.08668 4.13405 4.16310 4.36275 4.42443 4.50809 4.55814 4.65323 4.84026 4.86763 4.88727 5.03020 5.13709 5.29859 5.47486 5.91928 6.10464 6.41078 6.50632 6.88887 7.05224 7.62239 9.09919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.188 3.812 3 C -0.242 4.242 4 C 0.190 3.810 5 O -0.492 6.492 6 C -0.237 4.237 7 C 0.341 3.659 8 O -0.309 6.309 9 C 0.204 3.796 10 H 0.094 0.906 11 C -0.556 4.556 12 H 0.084 0.916 13 C 0.071 3.929 14 N -0.873 5.873 15 Si 0.905 3.095 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.265 1.265 19 C -0.017 4.017 20 N -0.253 5.253 21 C -0.026 4.026 22 C -0.041 4.041 23 C -0.044 4.044 24 N -0.540 5.540 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.141 0.859 29 H 0.403 0.597 30 H 0.144 0.856 31 H 0.284 0.716 32 H 0.150 0.850 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.081 0.919 36 H 0.137 0.863 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.141 0.859 41 H 0.100 0.900 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.587 4.982 -10.319 11.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.051 3.949 3 C -0.263 4.263 4 C 0.137 3.863 5 O -0.304 6.304 6 C -0.259 4.259 7 C 0.162 3.838 8 O -0.217 6.217 9 C 0.149 3.851 10 H 0.111 0.889 11 C -0.593 4.593 12 H 0.102 0.898 13 C -0.136 4.136 14 N -0.507 5.507 15 Si 0.730 3.270 16 H -0.192 1.192 17 H -0.201 1.201 18 H -0.189 1.189 19 C -0.138 4.138 20 N 0.089 4.911 21 C -0.166 4.166 22 C -0.183 4.183 23 C -0.186 4.186 24 N -0.266 5.266 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.159 0.841 29 H 0.261 0.739 30 H 0.162 0.838 31 H 0.094 0.906 32 H 0.168 0.832 33 H 0.113 0.887 34 H 0.146 0.854 35 H 0.099 0.901 36 H 0.156 0.844 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.159 0.841 41 H 0.118 0.882 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.203 3.926 -10.914 11.806 hybrid contribution 0.559 0.147 1.045 1.195 sum 2.763 4.073 -9.869 11.028 Atomic orbital electron populations 1.20799 0.88141 1.03795 1.03815 1.20837 0.96797 0.86625 0.90618 1.22105 0.93920 1.00164 1.10108 1.18402 0.89445 0.85209 0.93224 1.84733 1.74707 1.36619 1.34297 1.21322 1.01969 0.90035 1.12538 1.19623 0.87362 0.86618 0.90218 1.86324 1.37246 1.12457 1.85689 1.20490 0.94689 0.79978 0.89985 0.88878 1.21023 0.98320 0.97062 1.42894 0.89837 1.24964 0.95188 0.99089 0.94383 1.69739 1.09359 1.27824 1.43784 0.86301 0.79676 0.79764 0.81243 1.19214 1.20137 1.18932 1.24799 0.85227 1.09089 0.94674 1.45830 1.16729 1.14507 1.14077 1.24674 0.93236 0.98169 1.00566 1.24017 1.05582 1.04117 0.84626 1.24404 1.02708 0.83408 1.08034 1.67273 1.08342 1.30503 1.20516 0.89713 0.90317 0.90069 0.84111 0.73902 0.83778 0.90565 0.83217 0.88734 0.85400 0.90074 0.84450 0.87457 0.87227 0.86654 0.84137 0.88175 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.13 10.16 36.00 0.37 0.50 16 2 C 0.19 0.15 6.77 -82.65 -0.56 -0.41 16 3 C -0.24 -0.02 9.69 -39.29 -0.38 -0.40 16 4 C 0.19 0.04 6.77 -38.86 -0.26 -0.23 16 5 O -0.49 0.42 13.54 -18.96 -0.26 0.17 16 6 C -0.24 -0.06 10.00 -39.14 -0.39 -0.45 16 7 C 0.34 0.43 6.49 -17.17 -0.11 0.32 16 8 O -0.31 -0.26 5.79 -18.76 -0.11 -0.37 16 9 C 0.20 0.50 1.91 -27.88 -0.05 0.45 16 10 H 0.09 0.62 7.12 -51.93 -0.37 0.25 16 11 C -0.56 -2.63 5.24 -34.44 -0.18 -2.81 16 12 H 0.08 0.41 6.83 -52.49 -0.36 0.05 16 13 C 0.07 0.48 4.16 -17.82 -0.07 0.40 16 14 N -0.87 -7.04 11.71 55.43 0.65 -6.39 16 15 Si 0.91 5.93 29.54 -169.99 -5.02 0.91 16 16 H -0.27 -2.34 7.11 56.52 0.40 -1.94 16 17 H -0.28 -2.06 7.11 56.52 0.40 -1.66 16 18 H -0.27 -1.53 7.11 56.52 0.40 -1.13 16 19 C -0.02 0.03 4.09 -3.82 -0.02 0.02 16 20 N -0.25 1.64 0.05 -395.63 -0.02 1.62 16 21 C -0.03 0.13 6.79 60.06 0.41 0.54 16 22 C -0.04 0.39 7.87 60.06 0.47 0.87 16 23 C -0.04 0.31 7.01 60.06 0.42 0.73 16 24 N -0.54 -1.10 8.58 -9.62 -0.08 -1.18 16 25 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 26 H 0.08 -0.23 8.07 -51.93 -0.42 -0.65 16 27 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 28 H 0.14 -0.21 8.06 -52.49 -0.42 -0.63 16 29 H 0.40 -2.13 9.06 45.56 0.41 -1.72 16 30 H 0.14 -0.16 8.06 -52.49 -0.42 -0.58 16 31 H 0.28 2.42 8.31 -40.82 -0.34 2.09 16 32 H 0.15 0.03 6.28 -51.93 -0.33 -0.30 16 33 H 0.09 -0.23 7.81 -51.93 -0.41 -0.64 16 34 H 0.13 -0.31 5.92 -51.93 -0.31 -0.61 16 35 H 0.08 -0.66 7.84 -51.93 -0.41 -1.07 16 36 H 0.14 -0.45 4.87 -51.93 -0.25 -0.70 16 37 H 0.11 -1.10 8.14 -51.93 -0.42 -1.52 16 38 H 0.11 -1.27 7.88 -51.93 -0.41 -1.68 16 39 H 0.11 -1.06 8.11 -51.93 -0.42 -1.48 16 40 H 0.14 -0.75 5.08 -51.93 -0.26 -1.02 16 41 H 0.10 -0.99 7.82 -51.93 -0.41 -1.40 16 42 H 0.10 -0.61 7.16 -51.93 -0.37 -0.99 16 LS Contribution 326.20 15.07 4.92 4.92 Total: 0.00 -13.32 326.20 -5.84 -19.15 By element: Atomic # 1 Polarization: -12.80 SS G_CDS: -5.55 Total: -18.36 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -0.36 Total: -0.47 kcal Atomic # 7 Polarization: -6.50 SS G_CDS: 0.55 Total: -5.95 kcal Atomic # 8 Polarization: 0.16 SS G_CDS: -0.37 Total: -0.21 kcal Atomic # 14 Polarization: 5.93 SS G_CDS: -5.02 Total: 0.91 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -13.32 -5.84 -19.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228121409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.209 kcal (2) G-P(sol) polarization free energy of solvation -13.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds